HHsearch results for GI: 254780353 and protein with PDBid: 3l4j_A
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=0 Score=890.31 Aligned_cols=449 Identities=21% Similarity=0.335 Sum_probs=381.5
Q ss_pred CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCC
Q ss_conf 66542456653199999988888889998510476411289704689999999868999898035405366654276887
Q gi|254780353|r 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 (753)
Q Consensus 10 ~~~~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPH 89 (753)
....+.++.++++++++..+|+.||+|++. |||||++||||||||||||+|+++++.++.++.|||++||+|+| || |
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~~~a~~v~~~~~-yh-H 316 (757)
T 3l4j_A 240 GTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-H 316 (757)
T ss_dssp TCCCCSSCSEECHHHHHHHTHHHHHHHHHH-HHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTT-CC-S
T ss_pred CCEECCCCCEEEHHHHHHHHHHHHHHHHHH-HHCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHC-CC-C
T ss_conf 401048865233899888989998798898-61762331355899999999986189976771442421134306-88-8
Q ss_pred HHHHHHHHHHHHCCHH--HCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 4789999999610013--2166132678870886--77971002468998559999998421878617521679963242
Q gi|254780353|r 90 GDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165 (753)
Q Consensus 90 Gd~s~y~a~v~maq~~--~~~~pli~g~GnfGs~--~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP 165 (753)
||+|+|+|||+|||+| ++|+||++|||||||+ +|++||||||||||||+++..||.++|+++|+|++| ||...||
T Consensus 317 Ge~Sl~~aiv~maQ~~~gsnn~pLl~~~GnFGsr~~~g~~~AA~RYi~~rls~~~~~lf~~~D~~~l~y~~~-dg~~~EP 395 (757)
T 3l4j_A 317 GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEP 395 (757)
T ss_dssp CHHHHHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGGGGSCEEEC-SSSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCEECC
T ss_conf 841678999998611130576200036788566678898644578999863053675503356660113568-8762256
Q ss_pred EEECCCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 23123452676426650467777516777889999999998728653201344320367788776010698899989850
Q gi|254780353|r 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 (753)
Q Consensus 166 ~~lp~~~P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~t 245 (753)
.+||++|||||||||+|||||||||||||||.|||+||+++|++|++ .+++.+++||++++. .+
T Consensus 396 ~~y~p~iP~lLvNGa~GIavG~aTnIPphNp~eVi~~~~~~i~~~~~--~~~~p~~~Gf~g~i~--------------~~ 459 (757)
T 3l4j_A 396 EWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEEL--EQMHPWFRGWTGTIE--------------EI 459 (757)
T ss_dssp SCCCCSSCHHHHHCEEEECSSCEEEECCCCHHHHHHHHHHHHTTCCC--CCCCCCCTTCCSEEE--------------EE
T ss_pred CCCCCCCHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCHH--HHCCCCCCCCCCCCC--------------CC
T ss_conf 30232016888741456004641377898868999999998187145--431787578877521--------------01
Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCC-HHHHHHHHCCCCCEEEEEEEECCCCCHH
Q ss_conf 3341599999998643788407999524200216899999999864-0222-1345776406766058898504545889
Q gi|254780353|r 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII-AKRI-PLLEDIRDESAEDVRIVLFPKNRSLDPD 323 (753)
Q Consensus 246 G~G~i~~r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~-~~ki-~gi~dirDeSd~~~~~vi~~~~r~~~~~ 323 (753)
+.|++.++|+++. .|+++|+|||||||+|+++++|+|++++. ++|+ +.|.+++|+|+.++++++.++ ++.+++
T Consensus 460 ~~g~~~~~g~~e~----~~~~~I~ITELP~gv~t~~~~e~i~~~l~~~~Ki~~~i~d~~d~s~~~Vr~vI~lk-~~~~~~ 534 (757)
T 3l4j_A 460 EPLRYRMYGRIEQ----IGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLS-PEEMAK 534 (757)
T ss_dssp ETTEEEEECEEEE----EETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCSSSCCEEEECC-HHHHHH
T ss_pred CCCEEEEEEEEEE----CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEEEEC-CCCCHH
T ss_conf 4416999999997----27635999836731448899999987650245455530001145676227999981-666517
Q ss_pred HHHHHHHHHCCCCCCCCC-CEEEEE-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q ss_conf 999987542000012233-113331-26897220499999989999899999999999999999999999-------999
Q gi|254780353|r 324 LLMESIFMLSDMETRFPL-NMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK-------GLL 394 (753)
Q Consensus 324 ~vl~~Lyk~T~Lq~sf~~-N~~~l~-~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIle-------Gl~ 394 (753)
.+++.||++|+||++|++ ||++++ +|+.|+++++++||++|++||.+++.||.+|.|++++.++|+++ +++
T Consensus 535 ~~~~~l~k~~kL~ss~s~~Nm~l~d~~g~i~k~~sl~eIL~~f~~~Rl~~y~kRk~~ll~~l~~eL~~l~~k~rFI~~vi 614 (757)
T 3l4j_A 535 TRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMII 614 (757)
T ss_dssp HHHHCHHHHTTCEEEEECSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77653665432112352567999848897620189999999999999999999999999999999999872899997754
Q ss_pred HH-----HHHHHHHHHHHHCCCCCCC----------------------------------------CCCCCCCCCHHHHH
Q ss_conf 86-----4107899997520000110----------------------------------------00000257757788
Q gi|254780353|r 395 IA-----YLNIDEIIAIIRNEDKPKP----------------------------------------VMVSRFSLTENQVD 429 (753)
Q Consensus 395 ~a-----~~~ID~vI~iIR~s~~~k~----------------------------------------~L~~~f~lse~QA~ 429 (753)
-. -...|+||+++++++.++. ..++.+..++.|++
T Consensus 615 ~~~I~I~~~~k~eIi~~L~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~yd 694 (757)
T 3l4j_A 615 EKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYE 694 (757)
T ss_dssp TTSCCCSSSCHHHHHHHHHHTTCCEECSSCCEECCC------------------------------------CTTTCBSH
T ss_pred HCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH
T ss_conf 11133016888999999996799334466654302304667766543100111210000002344443201001345687
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99887899998899997666789999887765442039788789999999999874177
Q gi|254780353|r 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 (753)
Q Consensus 430 aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd 488 (753)
|||+|||++||++++++|++|++++++++++|++. +.+.+| .+||.+++++|.+
T Consensus 695 YLL~M~L~~LT~eevekL~~E~~~l~~Ei~~L~~~--t~~~lW---~~DL~~l~~e~~k 748 (757)
T 3l4j_A 695 YLLGMRIWSLTKERYQKLLKQKQEKETELENLLKL--SAKDIW---NTDLKAFEVGYQE 748 (757)
T ss_dssp HHHTSCGGGGSHHHHHHHHHHHHHHHHHHHHHHTC--CHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHH---HHHHHHHHHHHHH
T ss_conf 99838588877999999999999999999999868--999999---9999999999999