Query gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 753 No_of_seqs 247 out of 2778 Neff 6.2 Searched_HMMs 23785 Date Mon May 30 10:22:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780353.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1zvu_A Topoisomerase IV subuni 100.0 0 0 1690.1 49.5 699 39-751 1-712 (716) 2 2wl2_A GYRA, DNA gyrase subuni 100.0 0 0 1247.3 33.6 481 13-500 3-521 (522) 3 2inr_A DNA topoisomerase 4 sub 100.0 0 0 1204.4 28.7 481 13-500 24-507 (514) 4 2nov_A DNA topoisomerase 4 sub 100.0 0 0 1147.6 26.1 483 15-504 2-487 (496) 5 3ilw_A DNA gyrase subunit A; D 100.0 0 0 1137.1 32.0 459 35-500 3-469 (470) 6 2xcs_B DNA gyrase subunit B, D 100.0 0 0 1131.8 35.1 483 11-500 204-690 (692) 7 2xkj_E Topoisomerase IV; type 100.0 0 0 1114.0 36.6 498 10-518 266-766 (767) 8 3l4j_A DNA topoisomerase 2; to 100.0 0 0 890.3 24.4 449 10-488 240-748 (757) 9 1wp5_A Topoisomerase IV; broke 100.0 0 0 377.4 23.5 239 514-752 1-250 (323) 10 3l6v_A GYRA, DNA gyrase subuni 100.0 0 0 371.0 24.7 241 513-753 2-291 (370) 11 1suu_A DNA gyrase subunit A; t 100.0 0 0 364.1 24.0 242 511-753 1-258 (312) 12 1zi0_A DNA gyrase subunit A; b 100.0 1.4E-45 0 361.6 23.1 236 517-753 2-252 (307) 13 1zvt_A Topoisomerase IV subuni 100.0 2.4E-43 0 343.8 21.1 232 518-750 2-241 (256) 14 3ku8_A GYRA14, DNA gyrase subu 100.0 2E-29 8.3E-34 239.2 5.5 110 361-470 10-156 (156) 15 1suu_A DNA gyrase subunit A; t 99.9 1.1E-21 4.6E-26 181.0 20.8 182 517-701 113-308 (312) 16 3l6v_A GYRA, DNA gyrase subuni 99.9 4.9E-21 2E-25 176.1 21.0 183 517-702 112-342 (370) 17 1zi0_A DNA gyrase subunit A; b 99.9 1.1E-20 4.7E-25 173.4 20.1 175 519-696 110-297 (307) 18 1wp5_A Topoisomerase IV; broke 99.9 4.6E-20 1.9E-24 168.8 19.8 174 519-695 107-296 (323) 19 1zvu_A Topoisomerase IV subuni 99.4 3E-10 1.3E-14 94.9 23.3 180 517-700 513-713 (716) 20 1zvt_A Topoisomerase IV subuni 99.2 3.1E-09 1.3E-13 87.3 15.9 176 516-694 42-237 (256) 21 3l4j_A DNA topoisomerase 2; to 94.6 0.26 1.1E-05 27.7 9.1 25 270-295 418-442 (757) 22 1t3j_A Mitofusin 1; coiled coi 83.1 2.2 9.1E-05 20.8 6.4 53 434-486 39-94 (96) 23 2q6t_A DNAB replication FORK h 79.9 1.1 4.8E-05 22.9 3.1 21 268-288 202-222 (444) 24 2r6a_A DNAB helicase, replicat 74.0 2.2 9.1E-05 20.8 3.1 22 267-288 204-225 (454) 25 1b4u_A LIGA, LIGB, protocatech 69.2 3.7 0.00015 19.1 3.4 32 413-444 56-87 (139) 26 3cnf_A VP1; cytoplasmic polyhe 61.1 6.9 0.00029 17.1 3.8 138 224-375 791-963 (1333) 27 3ghg_B Fibrinogen beta chain; 56.0 8.3 0.00035 16.4 8.4 37 453-489 160-196 (461) 28 3a7m_A Flagellar protein FLIT; 52.1 8.5 0.00036 16.4 2.8 59 455-520 62-120 (122) 29 1zbt_A RF-1, peptide chain rel 50.2 10 0.00042 15.8 3.7 44 444-487 58-104 (371) 30 3dm0_A Maltose-binding peripla 49.3 10 0.00044 15.7 11.6 16 517-532 394-409 (694) 31 1m1j_B Fibrinogen beta chain; 49.0 11 0.00044 15.7 10.1 38 452-489 164-201 (464) 32 2dq3_A Seryl-tRNA synthetase; 45.1 12 0.0005 15.3 7.3 35 428-462 29-64 (425) 33 1m1j_C Fibrinogen gamma chain; 44.4 12 0.00051 15.2 12.2 119 351-489 19-138 (409) 34 3ghg_C Fibrinogen gamma chain; 43.9 12 0.00052 15.1 13.5 119 351-489 19-138 (411) 35 1dkg_A Nucleotide exchange fac 41.1 14 0.00057 14.8 3.9 14 518-531 167-180 (197) 36 3lss_A Seryl-tRNA synthetase; 35.7 16 0.00069 14.2 7.1 48 432-486 94-141 (484) 37 3nkz_A Flagellar protein FLIT; 34.8 17 0.00071 14.1 3.9 58 455-519 65-122 (123) 38 3hnw_A Uncharacterized protein 33.4 18 0.00074 14.0 7.6 43 361-409 33-76 (138) 39 3gc3_B Arrestin beta-1, clathr 33.1 18 0.00075 13.9 11.9 34 647-680 258-292 (363) 40 1x67_A Drebrin-like protein; c 32.7 18 0.00076 13.9 3.4 91 177-278 2-97 (146) 41 3kjd_A Poly [ADP-ribose] polym 29.6 19 0.00081 13.7 1.6 12 281-292 69-80 (368) 42 1bpo_A Protein (clathrin); cla 29.2 21 0.00086 13.5 13.1 31 647-677 258-289 (494) 43 1muk_A Minor core protein lamb 28.4 19 0.00079 13.8 1.4 139 236-386 279-452 (1267) 44 1xi4_A Clathrin heavy chain; a 28.0 21 0.0009 13.3 11.7 25 355-381 544-568 (1630) 45 2kz5_A Transcription factor NF 27.5 22 0.00092 13.3 2.0 37 401-440 38-74 (91) 46 3fv6_A YQZB protein; CBS domai 27.5 16 0.00067 14.3 0.9 39 79-119 19-60 (159) 47 3h3m_A Flagellar protein FLIT; 27.4 22 0.00092 13.3 3.9 36 454-489 74-109 (126) 48 1fzc_C Fibrin; blood coagulati 27.1 22 0.00094 13.2 2.3 42 446-487 8-49 (319) 49 2w9m_A Polymerase X; SAXS, DNA 26.6 7.8 0.00033 16.6 -0.8 58 270-332 59-116 (578) 50 1a92_A Delta antigen; leucine 26.1 23 0.00097 13.1 5.3 33 358-392 3-35 (50) 51 2r5u_A Replicative DNA helicas 25.6 24 0.00099 13.0 2.6 36 190-226 25-60 (200) 52 3oc4_A Oxidoreductase, pyridin 24.9 14 0.00057 14.9 0.2 10 559-568 270-279 (452) 53 1l1q_A Adenine phosphoribosylt 23.7 17 0.00071 14.1 0.5 29 261-292 114-142 (186) 54 1ldd_A APC2WHB, anaphase promo 23.7 25 0.0011 12.8 2.2 23 185-207 14-36 (74) 55 2x5e_A UPF0271 protein PA4511; 23.3 26 0.0011 12.7 1.7 48 71-123 32-82 (252) 56 2o16_A Acetoin utilization pro 23.2 19 0.00078 13.8 0.6 13 354-366 123-135 (160) 57 2db1_A Heterogeneous nuclear r 22.7 27 0.0011 12.6 1.7 24 265-288 17-40 (118) 58 1zn8_A APRT, adenine phosphori 22.7 18 0.00078 13.8 0.5 22 228-253 66-87 (180) 59 1b79_A DNAB helicase; hexamer, 22.0 27 0.0011 12.6 2.7 36 190-226 15-50 (119) 60 3ghg_A Fibrinogen alpha chain; 21.5 28 0.0012 12.5 8.6 12 352-363 46-57 (562) 61 2cdu_A NADPH oxidase; flavoenz 21.4 28 0.0012 12.5 1.8 10 559-568 273-282 (452) 62 3fxd_A Protein ICMQ; helix bun 21.3 28 0.0012 12.5 1.7 45 422-488 4-48 (57) 63 2dy0_A APRT, adenine phosphori 21.2 26 0.0011 12.7 1.0 46 196-253 48-93 (190) 64 1fxl_A Paraneoplastic encephal 21.1 28 0.0012 12.4 5.6 62 265-329 88-150 (167) 65 1v6t_A Hypothetical UPF0271 pr 20.6 29 0.0012 12.4 1.8 47 71-122 26-75 (255) 66 3l4f_A RHO guanine nucleotide 20.4 29 0.0012 12.3 4.8 45 445-489 10-54 (61) 67 2yqu_A 2-oxoglutarate dehydrog 20.3 23 0.00097 13.1 0.6 14 106-119 24-37 (455) 68 2hgl_A HNRPF protein, heteroge 20.1 30 0.0013 12.3 1.9 24 264-287 43-66 (136) No 1 >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} Probab=100.00 E-value=0 Score=1690.12 Aligned_cols=699 Identities=37% Similarity=0.691 Sum_probs=653.5 Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCC Q ss_conf 51047641128970468999999986899989803540536665427688747899999996100132166132678870 Q gi|254780353|r 39 KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118 (753) Q Consensus 39 ~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~maq~~~~~~pli~g~Gnf 118 (753) .+|||||+|||||||||||||||+++|+.++++|+||||+||+|||+||||||+|+|||||||||+|+|||||+|||||| T Consensus 1 l~RalP~~~DGlKpvqRril~~m~~~~~~~~~~~~k~a~~vg~v~g~yhpHGd~s~~~a~v~maq~~~~~~pl~~~~Gnf 80 (716) T 1zvu_A 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 80 (716) T ss_dssp -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCC T ss_conf 98778972238857888999999862898999854435479887418889759999999999835323046216478987 Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCHH Q ss_conf 886779-7100246899855999999842187861752167996324223123452676426650467777516777889 Q gi|254780353|r 119 GNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 (753) Q Consensus 119 Gs~~~d-~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~Ng~~GIavG~at~ipphnl~ 197 (753) ||++|+ +||||||||||||++++.||+|+|++||||+|||||+++||+|||++|||||||||+|||||||||||||||+ T Consensus 81 Gs~~~~~~~Aa~RY~e~rls~~~~~~~~~~~~~~~~~~~n~Dg~~~EP~~lp~~~P~lLvNG~~GIavG~aT~IpphNl~ 160 (716) T 1zvu_A 81 GAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 160 (716) T ss_dssp SSSSSCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCHH T ss_conf 89999965465667873557999998764065744766388987458730266564776357765456765277663368 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEEECCCCCC Q ss_conf 99999999872865320134432036778877601069889998985033415999999986437884079995242002 Q gi|254780353|r 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277 (753) Q Consensus 198 ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~e~~~~~~~~ivIteiPy~v 277 (753) ||++||+++|++|++++++||++||||||||||.|+.+++++.++|+||||+|++||+|++|+ ++|||||||||+ T Consensus 161 ev~~a~~~~i~~~~~~~~~l~~~i~gPdfptgg~i~~~~~~i~~~y~tG~G~i~~r~~~~~e~-----~~ivItEiPy~~ 235 (716) T 1zvu_A 161 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV 235 (716) T ss_dssp HHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET-----TEEEEEECCTTC T ss_pred HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEEEEEEEECCC-----CEEEEEECCCCC T ss_conf 888778998629987889996137789989856697684888876526985999999982448-----749999788545 Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCE-EE-EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC Q ss_conf 16899999999864022213457764067660-58-89850454588999998754200001223311333126897220 Q gi|254780353|r 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 (753) Q Consensus 278 ~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~-~~-vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf~~N~~~l~~~~~P~~~ 355 (753) |+++++|+|++++++||+++|+|+|||||+++ ++ |+++++++++++.+|++|||+|+||+||++||+++..+++|+++ T Consensus 236 ~~~~lie~i~~lv~~kki~~i~d~~DeSd~~~~~~vv~~~~~~~~~~e~vl~~Lyk~T~Lq~s~~~N~~~i~~~g~P~~~ 315 (716) T 1zvu_A 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK 315 (716) T ss_dssp CHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEEC T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCCCCCC T ss_conf 67889999998876489662000111356667579995055568899999999998442344313045788309964505 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 49999998999989999999999999999999999999986410789999752000011000000257757788998878 Q gi|254780353|r 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 (753) Q Consensus 356 ~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~~k~~L~~~f~lse~QA~aIL~mr 435 (753) +|+++|++|++||.++++||++|+|+++++|+||||||++|+.+||+||++||+|++|+.+||++|+|||.||+|||+|| T Consensus 316 ~l~eiL~~f~~~R~evi~rR~~~~L~k~~~rl~ilegl~~a~~~iD~vI~iIr~s~~~~~~l~~~f~~se~Qa~aIL~mr 395 (716) T 1zvu_A 316 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 395 (716) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHHHHHHHSTTCCTTHHHHHHTCC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 79999999999999999999999999999999999829999983999999996588558999985599989999999757 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCC Q ss_conf 99998899997666789999887765442039788789999999999874177433455542000011000000110024 Q gi|254780353|r 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515 (753) Q Consensus 436 L~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI 515 (753) |||||+||++|+++|+++|.++|++|++||+|+++++++|++||.+++++||++ |||.+.+. +.......+++| T Consensus 396 L~~Lt~le~~kl~~E~~~l~~~i~~l~~IL~s~~~l~~~I~~EL~elkkkfgd~-----RRT~i~~~-~~~~~~~~edli 469 (716) T 1zvu_A 396 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQER-EEAKAMSEHDML 469 (716) T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC-----CCSCBCCC-CCCCCCCSSTTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCC-CCCCCCCHHHHC T ss_conf 878778889999999999999999997420488898999998999999971898-----87422145-322457887807 Q ss_pred CCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCC Q ss_conf 56670599871010202565544553223455555401211114781789806882787551121212344442222357 Q gi|254780353|r 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 (753) Q Consensus 516 ~~E~v~V~LS~~GyIKr~k~~~~~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~~~kG~pI~~ll~ 595 (753) ++|+++|++|++||||+++++++..++.++|++|.+.+++.|+|||+++|||+.|++|++++|+||+++++|+|+.++++ T Consensus 470 ~~e~v~V~ls~~GyIkr~~~~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~fT~~Grvy~l~v~~lP~~~~kG~pi~~~l~ 549 (716) T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT 549 (716) T ss_dssp CCCCCCEEEETTTEEEECCC---------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTTTSC T ss_pred CCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCC T ss_conf 67650688636876862367765544542323665347899715764068835882799741457677678865434104 Q ss_pred CCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCCEEEEEECCC--CEEEEEECCCCEEEE Q ss_conf 676530789998579985999974897899638874023335627885368980568896189--809999569938995 Q gi|254780353|r 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIF 673 (753) Q Consensus 596 l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D~li~v~~~~~--d~iiliT~~Gk~LrF 673 (753) ++++|+|++++.++++.+++++|++|++|++.+++|.+++++|+.+++|+++|+++.+..+++ |+++++|++|++||| T Consensus 550 l~~~E~I~~i~~~~~d~~lll~T~~G~~K~~~l~~~~~~~k~Gk~aikLke~Deli~~~~~~~~~d~vl~vT~~Gk~lrF 629 (716) T 1zvu_A 550 LPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 629 (716) T ss_dssp CCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEE T ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEEHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEE T ss_conf 79998489987327886799997589589985136105475773778768998899899965999889998889829997 Q ss_pred EHHHCCCCCHHHCCEEEECCCC-------CEEEEEEEECCCCCEEEEECCCCCCC-CCHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 5787783361214133421878-------75689997338883699941775664-511432254441366602755267 Q gi|254780353|r 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGGVGSLVPKGFP 745 (753) Q Consensus 674 ~~~eIr~~gRgkGVk~i~Lkd~-------~~~~~~~~~~~e~~~il~~t~~g~~k-~~~~~~~~~~~RggkG~~~~k~~~ 745 (753) ++++||.||||+||++|+|+++ .++.+.++...+ . ++..+++++++ +..+.+++.++||++|++++ .++ T Consensus 630 ~~~ev~~~grg~GVkgikL~~~~~~~~~d~v~~~~v~~~~~-~-llv~t~~g~~k~~~~~~~~~~~~Rg~kG~~~~-~~~ 706 (716) T 1zvu_A 630 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQS-T-LTIHVGKRKIKLRPEELQKVTGERGRRGTLMR-GLQ 706 (716) T ss_dssp ESTTSCBCSSBSCEESSCCCHHHHHTTSSCEEEEEEECSSC-C-EEEEETTEEEEECHHHHTTSBCCTTSCCEECT-TCC T ss_pred EHHHCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCC-E-EEEEECCCEEEECHHHHHHHCCCCCCCCCCCC-CCC T ss_conf 88998865754771207306555556785599999977998-6-99998898078587883020178788887997-776 Q ss_pred CCCCEE Q ss_conf 768610 Q gi|254780353|r 746 RSGKFL 751 (753) Q Consensus 746 K~gklV 751 (753) |.+++- T Consensus 707 k~D~~e 712 (716) T 1zvu_A 707 RIDRVE 712 (716) T ss_dssp SCCEEE T ss_pred CCCCEE T ss_conf 678378 No 2 >2wl2_A GYRA, DNA gyrase subunit A; isomerase, aminocoumarin antibiotic, drug target, protein-ligand complex; HET: DNA SM8; 2.62A {Escherichia coli} PDB: 1ab4_A 1x75_A* Probab=100.00 E-value=0 Score=1247.32 Aligned_cols=481 Identities=46% Similarity=0.754 Sum_probs=461.6 Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHH Q ss_conf 42456653199999988888889998510476411289704689999999868999898035405366654276887478 Q gi|254780353|r 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92 (753) Q Consensus 13 ~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~ 92 (753) +.++|++++|+++|++|||+||||||++|||||+|||||||||||||||+++|++++++|.|||++||+|||+||||||+ T Consensus 3 ~~~~~~~~~~~~~~~~~~l~Ya~~vi~~RaiP~~~DGlKP~qRkil~~~~~~~l~~~~~~~K~a~l~G~v~~~yHpHGe~ 82 (522) T 2wl2_A 3 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 82 (522) T ss_dssp -------------------CHHHHHHHHHHCCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSSCT T ss_pred CCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHCCCCCCHH T ss_conf 43345461289999999999999999851378622488488989999998627888988425310299887436888689 Q ss_pred HHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 99999996100132166132678870886779710024689985599999984218786175216799632422312345 Q gi|254780353|r 93 SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172 (753) Q Consensus 93 s~y~a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~ 172 (753) |+|+|||||||+||+|+||++|||||||++||+||||||||||||++|..||.++|+++|+|+|||||+..||.|||++| T Consensus 83 sl~~tiv~maQ~fs~n~~l~~~qg~fgs~~g~~~Aa~RYi~trLs~~~~~l~~~~d~~~l~~~~n~Dg~~~EP~~~pp~i 162 (522) T 2wl2_A 83 AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKI 162 (522) T ss_dssp HHHHHHHHTTCTTTCSSCSEEEESCBCCTTCCCBCCTTTCEEEECHHHHHHTTTTTSSCSCEEECTTSSSEEESSCCCSS T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCC T ss_conf 99999999966402047031588999999998643230688888799999986232254376738898631670451357 Q ss_pred CHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 26764266504677775167778899999999987286532013443203677887760106988999898503341599 Q gi|254780353|r 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 (753) Q Consensus 173 P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~ 252 (753) ||||||||+|||||||||||||||+|||+||+++|++|++++.+||++||||||||||.+ .|.+|+.++|.||+|+|++ T Consensus 163 P~vLvNGa~GIgtG~sT~IP~hNp~evi~~~~~~i~~~~~~~~~l~~~i~gPdfP~g~~~-~g~~~~~~~~~~G~g~~~~ 241 (522) T 2wl2_A 163 PNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYI 241 (522) T ss_dssp CHHHHHCEECTTTTCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCTTCCEE-CCSHHHHHHHHHSEEEEEE T ss_pred CHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEE-CCCCHHHHHHHCCCEEEEE T ss_conf 489865786321343316899998999999999852765217889851889988876620-1761078886379707999 Q ss_pred EEEEEEEECC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 9999986437-884079995242002168999999998640222134577640676605889850454588999998754 Q gi|254780353|r 253 RARWCVEEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331 (753) Q Consensus 253 r~k~~~e~~~-~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk 331 (753) ||+|++|... .|+++|+||||||++|+++++|+|++++++||+++|+|+|||||+++.++++.++++++++.+++.||| T Consensus 242 r~~~~ie~~~~~~~~~i~ITELP~~~~t~~~~e~i~~lv~~kki~~i~d~~d~s~~~~vr~vI~lk~~~~~~~~~~~L~k 321 (522) T 2wl2_A 242 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYS 321 (522) T ss_dssp ECEEEEEECTTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCCCEEEEECTTSCHHHHHHHHHT T ss_pred EEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH T ss_conf 98899983145885479998269857799999999999975997754101135788760899967876788999999986 Q ss_pred HCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 20000122331133312689722049999998999989999999999999999999999999986410789999752000 Q gi|254780353|r 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 (753) Q Consensus 332 ~T~Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~ 411 (753) +|+||+||++||+++.++ .|+++++++||++|++||.++++||++|+|+++++|+|+|+|+++++.+||++|++||+++ T Consensus 322 ~tkL~ts~s~n~~~l~d~-~pk~~sl~eIL~~f~~~R~e~~~kR~~~~L~kl~~rl~il~~~~~~i~~Id~ii~iir~sk 400 (522) T 2wl2_A 322 QTQLQVSFGINMVALHHG-QPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAP 400 (522) T ss_dssp TSTTEEEEEEECEEEETT-EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCS T ss_pred HHHHHHCCCCEEEEEECC-EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 432762023038998689-6258329999999999999999999999999999999887608999983478899987068 Q ss_pred C---CCCCCCCC----------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0---11000000----------------------------------2577577889988789999889999766678999 Q gi|254780353|r 412 K---PKPVMVSR----------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 (753) Q Consensus 412 ~---~k~~L~~~----------------------------------f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL 454 (753) + ++..|+++ |.|||.||+|||+|||++||++|++|+++|+++| T Consensus 401 ~~~~ak~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSe~QadyIL~M~L~~LT~~e~~KL~~E~~~l 480 (522) T 2wl2_A 401 TPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 480 (522) T ss_dssp SHHHHHHHHHHSCEECTTTHHHHC----CCCSCTTCCTTSEESSSEEECCHHHHHHHHHCBGGGGSTHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 76999998764013430099999872242114310120005556765579999999996499997676599999999999 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE Q ss_conf 9887765442039788789999999999874177433455542000 Q gi|254780353|r 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 (753) Q Consensus 455 ~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~~~~RRT~ii 500 (753) ++++++|++||+|++.+|+++++||.+++++||++ |||.|+ T Consensus 481 ~~ei~eL~~iL~s~~~l~~~i~~EL~elk~ky~~~-----RrT~I~ 521 (522) T 2wl2_A 481 LDQIAELLRILGSADRLMEVIREELELVREQFGDK-----RRTEIT 521 (522) T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCC-----CCSEEC T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCCC T ss_conf 99999999996899999999999999999982898-----788614 No 3 >2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} Probab=100.00 E-value=0 Score=1204.36 Aligned_cols=481 Identities=37% Similarity=0.644 Sum_probs=467.5 Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHH Q ss_conf 42456653199999988888889998510476411289704689999999868999898035405366654276887478 Q gi|254780353|r 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92 (753) Q Consensus 13 ~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~ 92 (753) ..+.|.+++++++|+++|++||||||.+|||||++||||||||||||||+++|++++++|+|||++||+|||+||||||+ T Consensus 24 ~~~~i~~~~~~~~~~~~~~~Ya~~vi~~RaiP~~~DGLKP~qRkIL~~~~~~~l~~~~~~~K~A~~vg~v~~~YHpHGe~ 103 (514) T 2inr_A 24 VSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDS 103 (514) T ss_dssp -----------------------------CCCBTTTCCCHHHHHHHHHHHHHTCCSSSCCEEHHHHHHHHHHHTCC---C T ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCHH T ss_conf 02641534499999999998788987730277422488489999999999707888988210078999988653798488 Q ss_pred HHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC Q ss_conf 99999996100132166132678870886779710024689985599999984218786175216799632422312345 Q gi|254780353|r 93 SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172 (753) Q Consensus 93 s~y~a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~ 172 (753) |+|+|||||||+|++++||++|||||||++|++||||||||||||++|..||.|+|+++|+|+|||||+.+||+|||++| T Consensus 104 Sl~~tiv~mAQ~f~~~~~L~~~~G~fGs~~~~~~Aa~RYi~trLs~~a~~if~~~d~~~l~~~~n~Dg~~~EP~~y~pii 183 (514) T 2inr_A 104 SVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 183 (514) T ss_dssp HHHHHHHHTTCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECTTHHHHSTTTTSSCSCEEECTTSSSEEESSCCCSS T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCC T ss_conf 99999999855400565351578999999998511477999887689999976437574267668899731774025767 Q ss_pred CHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 26764266504677775167778899999999987286532013443203677887760106988999898503341599 Q gi|254780353|r 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 (753) Q Consensus 173 P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~ 252 (753) ||||||||+||||||||+||||||.|||+||+++|++|++++++|++++|||||||||.|. +.+|+.++|+||+|+|++ T Consensus 184 P~vLvNGs~GIgtG~sT~IPphNp~evi~~~~~~l~~~~~~~~el~~~~~GPdFptGg~I~-~~~~~~~~y~~G~G~i~~ 262 (514) T 2inr_A 184 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQ-GIDGIKKAYESGKGRIIV 262 (514) T ss_dssp CHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEE-CHHHHHHHHHHSEEEEEE T ss_pred CHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEE-CCCHHHHHHHCCCEEEEE T ss_conf 3898736776223200377998999999999999649999879996207799899984687-761178886268369998 Q ss_pred EEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 99999864378840799952420021689999999986402221345776406766058898504545889999987542 Q gi|254780353|r 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332 (753) Q Consensus 253 r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~ 332 (753) |+++++|+.+.|+++|+||||||++|+++++++|+++++++|+++|+|++|+||+++.++++..+++++++.++++|||+ T Consensus 263 ~~~~~ie~~~~g~~~i~ItElP~~~~~~~~~~~i~~l~~~~ki~~i~d~~d~s~~~~i~ivi~~~~~~~~~~~~~~L~k~ 342 (514) T 2inr_A 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKN 342 (514) T ss_dssp ECEEEECC----CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTTS T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHC T ss_conf 44899997379826899984355456778999999998559878700303246887329999805762078888899850 Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC- Q ss_conf 0000122331133312689722049999998999989999999999999999999999999986410789999752000- Q gi|254780353|r 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED- 411 (753) Q Consensus 333 T~Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~- 411 (753) |+||+||++|++++.+ +.|+++++.+||+.|++||.++++||++|+|+++++|+|+++|++.++.++|++|++||+|+ T Consensus 343 t~l~st~~~n~~~l~~-~~pk~~~l~eIL~~f~~~R~~~y~kR~~~~L~k~e~rl~il~~~i~~i~~id~vi~iIr~sk~ 421 (514) T 2inr_A 343 SDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKN 421 (514) T ss_dssp STTEEEEEEECEEEET-TEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCS T ss_pred CCCCCCCCEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCC T ss_conf 6310122236898339-914667789999999999999999999999999999997753231277542214442221799 Q ss_pred --CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf --011000000257757788998878999988999976667899998877654420397887899999999998741774 Q gi|254780353|r 412 --KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753) Q Consensus 412 --~~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753) +++..|++.|+|||.||+|||+|||++||+++++||++|+++|++++++|+++|+|++.+|+++++||.+++++||++ T Consensus 422 ~~e~~~~L~k~f~~se~qadyLL~M~L~~LT~eei~kL~~E~~el~~ei~eL~~iL~s~~~l~~~i~~EL~el~kky~~~ 501 (514) T 2inr_A 422 KRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 501 (514) T ss_dssp HHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 89999998874599999999998278998706899999999999999999999986899999999999999999983898 Q ss_pred CCCCCCCCCEE Q ss_conf 33455542000 Q gi|254780353|r 490 TDLGRRRTTFC 500 (753) Q Consensus 490 ~~~~~RRT~ii 500 (753) |||.|. T Consensus 502 -----RrT~I~ 507 (514) T 2inr_A 502 -----RLSLIE 507 (514) T ss_dssp -----CCCEEE T ss_pred -----CCCCCC T ss_conf -----861342 No 4 >2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* Probab=100.00 E-value=0 Score=1147.62 Aligned_cols=483 Identities=35% Similarity=0.669 Sum_probs=466.5 Q ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHH Q ss_conf 45665319999998888888999851047641128970468999999986899989803540536665427688747899 Q gi|254780353|r 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 (753) Q Consensus 15 ~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~ 94 (753) .+|.+++|++++.++|++||||||.+|||||++||||||||||||||++++++++++|.|||++||+|||+||||||+|+ T Consensus 2 ~~~~~~~~~~~~~~~~~~ya~~~i~~RaiP~~~DGLKp~qRkiL~~~~~~~l~~~~~~~KvA~~~g~v~~~yHpHGe~Sl 81 (496) T 2nov_A 2 SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSI 81 (496) T ss_dssp ---------------------------CCCCTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCSTTT T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHH T ss_conf 98723669999999999888898661148842148848998999998862788898802426379988741588778899 Q ss_pred HHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCH Q ss_conf 99999610013216613267887088677971002468998559999998421878617521679963242231234526 Q gi|254780353|r 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174 (753) Q Consensus 95 y~a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~ 174 (753) |+|||+|||+|++|+||++|||||||++|++|||||||||||++++..+|.++|.++|+|.+||||+..||++||++||+ T Consensus 82 ~~tiv~mAq~fsnn~~Ll~~~G~FGsr~~~~~Aa~RYi~~~l~~~~~~lf~~~d~~~~~~~~~~dg~~~EP~~y~piiP~ 161 (496) T 2nov_A 82 YDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPN 161 (496) T ss_dssp HHHHHHTTCTTTSSSCSEEEESCSCCSSSCCCCCTTTCEEEECHHHHTTSTTCCCCCSCEEECSSSSSEEESSCCCSSCH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCH T ss_conf 99999997874247644037788788899704468889998888798752564423234655888862277000465758 Q ss_pred HHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE Q ss_conf 76426650467777516777889999999998728653201344320367788776010698899989850334159999 Q gi|254780353|r 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 (753) Q Consensus 175 lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~ 254 (753) ||||||+||||||||+||||||.|||+|++++|++|++++++|++++|||||||||+| .+.+++.++|++|+|+|++|| T Consensus 162 vLvNG~~GIgtG~sT~IP~~Np~evi~~~~~~l~~~~~~~~~l~~~~~~pdfptGg~i-~~~~~~~~~y~~g~G~i~~~~ 240 (496) T 2nov_A 162 LLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRS 240 (496) T ss_dssp HHHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEE-CCHHHHHHHHHHSEEECCEEC T ss_pred HHHCCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEE-ECCHHHHHHHHCCCCEEEEEE T ss_conf 8754777624200105777788999999999850999998999863788989987455-471667999856994399966 Q ss_pred EEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCC Q ss_conf 99986437884079995242002168999999998640222134577640676605889850454588999998754200 Q gi|254780353|r 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334 (753) Q Consensus 255 k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~ 334 (753) +|++|....|+++|+||||||++|+++++++|++|++++|+++|+|++|+|++++.++++.++++.+++.++++|||+|+ T Consensus 241 ~~~~e~~~~~~~~i~ITELP~g~~t~~~~e~l~~l~~~~ki~~i~d~~Des~~~~v~i~I~lk~~~~~~~~~~~l~k~t~ 320 (496) T 2nov_A 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTD 320 (496) T ss_dssp EEEEEECSTTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CCCCTTHHHHHHHSST T ss_pred EEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCEE T ss_conf 78999726983489999706656577899999987643876770121444788850899981532246778999986101 Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--- Q ss_conf 00122331133312689722049999998999989999999999999999999999999986410789999752000--- Q gi|254780353|r 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--- 411 (753) Q Consensus 335 Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~--- 411 (753) ||++|++||+++. ++.|++++++|||+.|++||.++++||.+|+|+++++|+|+|+|+++++.+||++|.+||+++ T Consensus 321 l~st~~~n~~~~~-~~~pk~~sv~eIL~~f~~~R~~~~~rR~~~~l~~~e~rl~il~~~~~fi~~i~~~i~~ir~~k~~~ 399 (496) T 2nov_A 321 LQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKA 399 (496) T ss_dssp TEECCEEECEEEE-TTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSHH T ss_pred EEEEHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 0010565555553-058840569999999899999999999999999999999998628999985656788887179879 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 01100000025775778899887899998899997666789999887765442039788789999999999874177433 Q gi|254780353|r 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 (753) Q Consensus 412 ~~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~ 491 (753) +++..|++.|++||.||+|||+|||++||++|++|+++|+++|++++++|+++|+|++.+++++++||.+++++||++ T Consensus 400 ~~~~~l~~~f~lse~q~dyLL~M~L~~LT~~e~~kL~~E~~~l~~ei~~L~~il~~~~~l~~~~~~eL~~l~~k~~~~-- 477 (496) T 2nov_A 400 DAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477 (496) T ss_dssp HHHSSCCC-CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCCC-- T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-- T ss_conf 999999986599999999999758999758999999999999999999999996899999999999999999983898-- Q ss_pred CCCCCCCEEECCC Q ss_conf 4555420000110 Q gi|254780353|r 492 LGRRRTTFCEVSR 504 (753) Q Consensus 492 ~~~RRT~iie~~~ 504 (753) |||.|.+..+ T Consensus 478 ---RrT~i~~~~~ 487 (496) T 2nov_A 478 ---RLSSLEDTAK 487 (496) T ss_dssp ---CCSBC----- T ss_pred ---CCCCCCCCHH T ss_conf ---8860748676 No 5 >3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A* Probab=100.00 E-value=0 Score=1137.15 Aligned_cols=459 Identities=39% Similarity=0.679 Sum_probs=441.7 Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCC Q ss_conf 99985104764112897046899999998689998980354053666542768874789999999610013216613267 Q gi|254780353|r 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114 (753) Q Consensus 35 ~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~maq~~~~~~pli~g 114 (753) -|||++|||||++||||||||||||||+++++.++.++.|||++||+|||+||||||+|+|+|||+|||+||||+||++| T Consensus 3 ~svi~~RaiP~~~DGLKp~qRkil~~~~~~~l~~~~k~~k~a~~v~e~~~~YHpHGe~Sl~~tiv~mAQ~fsnn~~Ll~~ 82 (470) T 3ilw_A 3 ASVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDG 82 (470) T ss_dssp ----CTTTSCBTTTCCCHHHHHHHHHHHHHTCCTTSCCEEHHHHHHHHHHHTCCCCSTHHHHHHHHHHCTTTCSSCSEEE T ss_pred CCEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 63120044775213885899999999997289889861011568997501468886889999999985610204634147 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCC Q ss_conf 88708867797100246899855999999842187861752167996324223123452676426650467777516777 Q gi|254780353|r 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 (753) Q Consensus 115 ~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~Ng~~GIavG~at~ipph 194 (753) ||||||++||+||||||||||||++|..||.++|.++|+|++||||++.||+|||++||+||||||+||||||||+|||| T Consensus 83 ~G~FGs~~g~~aAa~RYi~t~Ls~~~~~if~~~d~~~l~~~~n~Dg~~~EP~~y~piiP~vLvNG~~GIgtG~sT~IP~~ 162 (470) T 3ilw_A 83 QGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 162 (470) T ss_dssp ESCCCCSSSCCCCCTTSCEEEECHHHHHHHTTGGGTCSCEEECTTSSSEEESSCCCSSCHHHHHCEECSSTTCSCEECCC T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCC T ss_conf 89999999997644136887441899999734320410467565786458720164362998637775253000367760 Q ss_pred CHHHHHHHHHHHHHCCCCCCHH----HHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEE Q ss_conf 8899999999987286532013----443203677887760106988999898503341599999998643788407999 Q gi|254780353|r 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270 (753) Q Consensus 195 nl~ev~~a~~~~i~~~~~~~~~----l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~e~~~~~~~~ivI 270 (753) ||.|||+||+++|++|+++..+ ++++++||||||||.|+ |..|..++|+||+|++++|++|++|+...|+++++| T Consensus 163 Np~evi~~~~~~l~~~~~~~~~~~~~~~~~~~gPdfp~g~~i~-g~~~~~~~y~~G~g~~~~~~~~~iee~~~gk~~i~I 241 (470) T 3ilw_A 163 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIV-GSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVI 241 (470) T ss_dssp CHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEE-CSHHHHHHHHHSEEEEEEECEEEEEECTTCCEEEEE T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEE-CCCCHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEE T ss_conf 1567999999986477421035589986157789989876676-662446674259824999879999975798258999 Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 52420021689999999986402221345776406-76605889850454588999998754200001223311333126 Q gi|254780353|r 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349 (753) Q Consensus 271 teiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeS-d~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf~~N~~~l~~~ 349 (753) |||||++++++++++|++++.++|+++|+|++|+| ++.+.++++..+++++++.+++.|||+|+||+||++||+||.++ T Consensus 242 tElP~~~~~~~~~e~i~~~~~~kk~~~i~di~de~s~~~~vrivI~lk~~~~~~~~~~~L~k~tkL~ts~s~n~~~l~d~ 321 (470) T 3ilw_A 242 TELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG 321 (470) T ss_dssp EECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEEETT T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEECCEEEEEECC T ss_conf 86214454889999999997568867734302034777654899852687778999999998558066650369999899 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCHH Q ss_conf 89722049999998999989999999999999999999999999986410789999752000---011000000257757 Q gi|254780353|r 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426 (753) Q Consensus 350 ~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~---~~k~~L~~~f~lse~ 426 (753) .|+++++++||+.|++||.++++||++|+|+++++|+|+|+|+++++.+||++|.++|+++ .++..|++.|++||. T Consensus 322 -~pk~~~~~eIL~~f~~~R~~~y~kR~~~~L~k~~~rl~il~~~~~~i~~id~~i~iir~s~~~~~~k~~l~k~~~lse~ 400 (470) T 3ilw_A 322 -VPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEI 400 (470) T ss_dssp -EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTCCHH T ss_pred -EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH T ss_conf -7147379999999999999999999999999999999999759999970277788887158889999987774399999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE Q ss_conf 78899887899998899997666789999887765442039788789999999999874177433455542000 Q gi|254780353|r 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 (753) Q Consensus 427 QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~~~~RRT~ii 500 (753) ||+|||+|||++||++|++++++|+++|++++++|++||+|++.+|+++++||.+++++||+| |||.|+ T Consensus 401 qadyLL~M~L~~LT~ee~~kL~~E~~~l~~ei~~L~~il~~~~~l~~~i~~EL~~l~~k~~~~-----RrT~I~ 469 (470) T 3ilw_A 401 QAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDD-----RRTRII 469 (470) T ss_dssp HHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC-----CCSEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCCC T ss_conf 999998519998716889999999999999999999996899999999999999999982898-----788437 No 6 >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A* Probab=100.00 E-value=0 Score=1131.75 Aligned_cols=483 Identities=43% Similarity=0.758 Sum_probs=464.7 Q ss_pred CCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCH Q ss_conf 65424566531999999888888899985104764112897046899999998689998980354053666542768874 Q gi|254780353|r 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90 (753) Q Consensus 11 ~~~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHG 90 (753) ...++++..+++.++|.++|++||||+|.+|||||++||||||||||||||+++++.++++|+|||++||+|+|+||||| T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Raip~~~DGlKp~qRkil~~~~~~~~~~~~~~~k~a~~~g~v~~~~~~HG 283 (692) T 2xcs_B 204 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHG 283 (692) T ss_dssp --------EEEHHHHHHHHHHHHHHHHHHHTSSCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSC T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCC T ss_conf 34610355341899888999999998877404751421765789999999998567888876763165898886508885 Q ss_pred HHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECC Q ss_conf 78999999961001321661326788708867797100246899855999999842187861752167996324223123 Q gi|254780353|r 91 DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170 (753) Q Consensus 91 d~s~y~a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~ 170 (753) |+|+|+|||+|||+|++|+||++|||||||++||+|||||||||||++++..+|.++++++|+|++||||+..||++||+ T Consensus 284 e~sl~~tiv~maq~~~~n~~ll~~~G~fGs~~g~~~aa~RYi~~~l~~~~~~~~~~~~~~~~~~~~~~dg~~~EP~~~~p 363 (692) T 2xcs_B 284 DSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPA 363 (692) T ss_dssp HHHHHHHHHHHHCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECHHHHHHHTTTTTTCSCEEECTTSSCEEESSCCC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCC T ss_conf 67787889998643521665300158878999996300216877517768876422365356555302555468744786 Q ss_pred CCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE Q ss_conf 45267642665046777751677788999999999872865320134432036778877601069889998985033415 Q gi|254780353|r 171 KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 (753) Q Consensus 171 ~~P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i 250 (753) ++|++||||++||||||||+||||||.|||+|++++|++|+++.++|++++|||||||||.|. |.+|+.++|.||+|++ T Consensus 364 ~iP~~LvNG~~GIgtG~sT~IP~hNp~eVi~~i~~~l~~~~~~~~el~~~i~gPdfPtgg~i~-g~~g~~~~y~tGrg~~ 442 (692) T 2xcs_B 364 RFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 442 (692) T ss_dssp SSCHHHHHCEEEECSSCEEEECCBCHHHHHHHHHHHHTCTTCCHHHHTTTCCSBCCTTCCEEE-CSHHHHHHHHHSEEEE T ss_pred CCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEE-CCCCEEEHHCCCCCCE T ss_conf 563888736875226763156788989999999998549853589998428889899876587-7754000221787515 Q ss_pred EEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCEEEEEEEECCCCCHHHHHHHH Q ss_conf 99999998643788407999524200216899999999864022213457764067-66058898504545889999987 Q gi|254780353|r 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESI 329 (753) Q Consensus 251 ~~r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd-~~~~~vi~~~~r~~~~~~vl~~L 329 (753) ++|+++.+++..+|+++|+||||||++|+++++|+|++++++||+++|+|++|||+ +.+.++++..+++.+++.+++.| T Consensus 443 ~~~~~~~~~~~~~~k~~I~ITELP~g~wt~~yke~L~~lv~~kki~~i~d~~des~~~~~vrivi~~k~~~~~~~~~~~L 522 (692) T 2xcs_B 443 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNL 522 (692) T ss_dssp EEECEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHHH T ss_pred EEEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCCCCHHHHHHHH T ss_conf 89999999994499659999825887778999999999997599776055114566652179999826887889999878 Q ss_pred HHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 54200001223311333126897220499999989999899999999999999999999999999864107899997520 Q gi|254780353|r 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409 (753) Q Consensus 330 yk~T~Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~ 409 (753) |++|+||+|||+||+++.+| .|+++++.+||+.|++||.+++.||.+|+|+++++|+|||+|+++++.+||+||++||+ T Consensus 523 ~k~tkL~tsis~N~~~l~dg-~pk~~~~~eIL~~f~~~Rle~y~KRkey~L~kle~rl~iLegl~~~i~~ID~vIkiIr~ 601 (692) T 2xcs_B 523 YKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRE 601 (692) T ss_dssp HHHSTTEEEEEEECEEEETT-EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT T ss_pred HHHCCCEEEECCEEEEEECC-EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 87577322102069999889-36893259999999999999999999999999999999998099999849999999982 Q ss_pred CCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 000---11000000257757788998878999988999976667899998877654420397887899999999998741 Q gi|254780353|r 410 EDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 (753) Q Consensus 410 s~~---~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkf 486 (753) |++ ++..|+++|++|+.||+|||+|||++||++|++|+++|+++|++++++|++||+|++.+|+++++||.+++++| T Consensus 602 sk~~~~a~~~L~~~f~lse~QadyLL~M~L~~LT~eeieKL~~E~~el~~ei~eL~~iL~s~~~l~~~i~~EL~~lkkky 681 (692) T 2xcs_B 602 SDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 681 (692) T ss_dssp CSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 99989999999986599999999999709999757799999999999999999999986899999999999999999982 Q ss_pred CCCCCCCCCCCCEE Q ss_conf 77433455542000 Q gi|254780353|r 487 SKSTDLGRRRTTFC 500 (753) Q Consensus 487 gd~~~~~~RRT~ii 500 (753) |++ |||.|. T Consensus 682 ~~~-----RRT~Ie 690 (692) T 2xcs_B 682 GDD-----RRTEIQ 690 (692) T ss_dssp CCC-----CCSEEE T ss_pred CCC-----CCCCCC T ss_conf 898-----786215 No 7 >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Probab=100.00 E-value=0 Score=1113.97 Aligned_cols=498 Identities=42% Similarity=0.727 Sum_probs=476.4 Q ss_pred CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCC Q ss_conf 66542456653199999988888889998510476411289704689999999868999898035405366654276887 Q gi|254780353|r 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 (753) Q Consensus 10 ~~~~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPH 89 (753) ..+.+....++++.+.+.+.|+.||||+|.+|||||++||||||||||||+|+++++.++.++.|||++||+|+|+|||| T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~ys~~~~~~R~iP~~~DGLKp~QRkIL~~~~k~~l~~~~k~~k~a~~vg~v~~~~yhH 345 (767) T 2xkj_E 266 TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPH 345 (767) T ss_dssp --------CEEEHHHHHHHHHHHHHHHHHHHHTCCBTTTSCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCS T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 55565454564299999999987777766640256154405588899999999874057741788887889886233888 Q ss_pred HHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE Q ss_conf 478999999961001321661326788708867-7971002468998559999998421878617521679963242231 Q gi|254780353|r 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168 (753) Q Consensus 90 Gd~s~y~a~v~maq~~~~~~pli~g~GnfGs~~-~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~l 168 (753) ||+|+|+|||+|||+|+||+||++|||||||++ |++||||||||||||+++..+|.++|.++++|++||||+..||++| T Consensus 346 Ge~Sl~~tiv~MAQ~fsnNipLl~p~GqFGsr~gg~daAa~RYI~t~Ls~~~~~if~~~D~~~l~y~~~~d~~~~eP~~y 425 (767) T 2xkj_E 346 GDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITL 425 (767) T ss_dssp CHHHHHHHHHHHHCTTTCSSCSEECSSCCCBTTBTTCCCCTTTCEEEECGGGHHHHTTTTTTCSCEEECTTSSSEEESSC T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEECCCCCEECCCCC T ss_conf 61577788999724543187650114576766899444557888736788899861055731330311789826677522 Q ss_pred CCCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 23452676426650467777516777889999999998728653201344320367788776010698899989850334 Q gi|254780353|r 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 (753) Q Consensus 169 p~~~P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G 248 (753) |++||+|||||++|||||||||||||||.|||++|+++|++++++.+++++++|||||||||.++.+.+++.++|.||+| T Consensus 426 ~piIPmvLVNG~~GIgtG~ST~IP~hNp~eII~~i~~~l~~~~~~~e~~~~~~p~p~~p~g~~i~~~~~~~~~~~~~g~G 505 (767) T 2xkj_E 426 PARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 505 (767) T ss_dssp CCSSCHHHHHCEEEEETTEEEEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCSSSCEECCCHHHHHHHHHHSEE T ss_pred CCCCHHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCC T ss_conf 65353998647864102443177987789999999999728655646786215789899874796688888887762897 Q ss_pred EEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC--EEEEEEEECCCCCHHHHH Q ss_conf 159999999864378840799952420021689999999986402221345776406766--058898504545889999 Q gi|254780353|r 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLM 326 (753) Q Consensus 249 ~i~~r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~--~~~vi~~~~r~~~~~~vl 326 (753) ++.+||+++++ +++|+||||||++|+++++++|.++++++|++++.|++|+|+.. .+++++.+.+..+++.++ T Consensus 506 ~~~~r~~~~i~-----~~~I~ITELPig~wt~~yke~L~~li~~kki~~i~di~D~s~~~~~irivi~~k~~~~~~e~~~ 580 (767) T 2xkj_E 506 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAEAVM 580 (767) T ss_dssp EEEEECEEEEE-----TTEEEEEECCTTCCHHHHHHHHHHHHHTTCCTTEEEEEECCCSSCSSCEEEEESCTTSCHHHHH T ss_pred CEEEEEEEEEC-----CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCHHHHH T ss_conf 17874368970-----6549999528725677799999999975997764212332567786699994476647999999 Q ss_pred HHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98754200001223311333126897220499999989999899999999999999999999999999864107899997 Q gi|254780353|r 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406 (753) Q Consensus 327 ~~Lyk~T~Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~i 406 (753) +.||++|+||++|++||+++..++.|+++++.|||++|++||.+++.||.+|+|+++++|+|||+||++++.+||+||++ T Consensus 581 ~~L~k~t~L~~s~s~N~~~i~~~g~~Ky~s~~EIL~eF~~~Rl~~y~KRkey~L~kle~rl~iLegli~~~~~iD~vI~i 660 (767) T 2xkj_E 581 SHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRI 660 (767) T ss_dssp HHHHHHSTTEEEEEEECEEECTTSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99986401012110468998559974667899999999999999999999999999999999998299999829999999 Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 52000011000000257757788998878999988999976667899998877654420397887899999999998741 Q gi|254780353|r 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 (753) Q Consensus 407 IR~s~~~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkf 486 (753) ||++++|+..|+++|++||.||+|||+|||++||++|++++++|+++|++++++|+++|+|++.+++++++||.+++++| T Consensus 661 Ir~s~~~k~~L~~~f~l~e~qadyLL~M~L~~LTk~e~~kL~~E~~el~~ei~eL~~iL~s~~~l~~~i~~EL~el~kky 740 (767) T 2xkj_E 661 IREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740 (767) T ss_dssp HHHCSSHHHHHHHHHTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 98278468999986599999999999869998452479999999999999999999997899999999999999999981 Q ss_pred CCCCCCCCCCCCEEECCCHHHHHHHHCCCCCC Q ss_conf 77433455542000011000000110024566 Q gi|254780353|r 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 (753) Q Consensus 487 gd~~~~~~RRT~iie~~~~~~~~~~EdlI~~E 518 (753) |+| |||.|.+..+ ..++..|++|++| T Consensus 741 g~~-----RrT~I~~~~e-~~~~~~e~~i~~e 766 (767) T 2xkj_E 741 GDE-----RRSPIVARAE-AVQIKEQDLMPAE 766 (767) T ss_dssp CCC-----CSSCBCCCCC-CCCC--------- T ss_pred CCC-----CCCEEECCCC-CCCCCHHHCCCCC T ss_conf 898-----8732126654-3567653357778 No 8 >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Probab=100.00 E-value=0 Score=890.31 Aligned_cols=449 Identities=21% Similarity=0.335 Sum_probs=381.5 Q ss_pred CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCC Q ss_conf 66542456653199999988888889998510476411289704689999999868999898035405366654276887 Q gi|254780353|r 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 (753) Q Consensus 10 ~~~~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPH 89 (753) ....+.++.++++++++..+|+.||+|++. |||||++||||||||||||+|+++++.++.++.|||++||+|+| || | T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~~~a~~v~~~~~-yh-H 316 (757) T 3l4j_A 240 GTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-H 316 (757) T ss_dssp TCCCCSSCSEECHHHHHHHTHHHHHHHHHH-HHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTT-CC-S T ss_pred CCEECCCCCEEEHHHHHHHHHHHHHHHHHH-HHCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHC-CC-C T ss_conf 401048865233899888989998798898-61762331355899999999986189976771442421134306-88-8 Q ss_pred HHHHHHHHHHHHCCHH--HCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE Q ss_conf 4789999999610013--2166132678870886--77971002468998559999998421878617521679963242 Q gi|254780353|r 90 GDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165 (753) Q Consensus 90 Gd~s~y~a~v~maq~~--~~~~pli~g~GnfGs~--~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP 165 (753) ||+|+|+|||+|||+| ++|+||++|||||||+ +|++||||||||||||+++..||.++|+++|+|++| ||...|| T Consensus 317 Ge~Sl~~aiv~maQ~~~gsnn~pLl~~~GnFGsr~~~g~~~AA~RYi~~rls~~~~~lf~~~D~~~l~y~~~-dg~~~EP 395 (757) T 3l4j_A 317 GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEP 395 (757) T ss_dssp CHHHHHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGGGGSCEEEC-SSSEEEE T ss_pred CCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCEECC T ss_conf 841678999998611130576200036788566678898644578999863053675503356660113568-8762256 Q ss_pred EEECCCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC Q ss_conf 23123452676426650467777516777889999999998728653201344320367788776010698899989850 Q gi|254780353|r 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 (753) Q Consensus 166 ~~lp~~~P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~t 245 (753) .+||++|||||||||+|||||||||||||||.|||+||+++|++|++ .+++.+++||++++. .+ T Consensus 396 ~~y~p~iP~lLvNGa~GIavG~aTnIPphNp~eVi~~~~~~i~~~~~--~~~~p~~~Gf~g~i~--------------~~ 459 (757) T 3l4j_A 396 EWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEEL--EQMHPWFRGWTGTIE--------------EI 459 (757) T ss_dssp SCCCCSSCHHHHHCEEEECSSCEEEECCCCHHHHHHHHHHHHTTCCC--CCCCCCCTTCCSEEE--------------EE T ss_pred CCCCCCCHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCHH--HHCCCCCCCCCCCCC--------------CC T ss_conf 30232016888741456004641377898868999999998187145--431787578877521--------------01 Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCC-HHHHHHHHCCCCCEEEEEEEECCCCCHH Q ss_conf 3341599999998643788407999524200216899999999864-0222-1345776406766058898504545889 Q gi|254780353|r 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII-AKRI-PLLEDIRDESAEDVRIVLFPKNRSLDPD 323 (753) Q Consensus 246 G~G~i~~r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~-~~ki-~gi~dirDeSd~~~~~vi~~~~r~~~~~ 323 (753) +.|++.++|+++. .|+++|+|||||||+|+++++|+|++++. ++|+ +.|.+++|+|+.++++++.++ ++.+++ T Consensus 460 ~~g~~~~~g~~e~----~~~~~I~ITELP~gv~t~~~~e~i~~~l~~~~Ki~~~i~d~~d~s~~~Vr~vI~lk-~~~~~~ 534 (757) T 3l4j_A 460 EPLRYRMYGRIEQ----IGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLS-PEEMAK 534 (757) T ss_dssp ETTEEEEECEEEE----EETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCSSSCCEEEECC-HHHHHH T ss_pred CCCEEEEEEEEEE----CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEEEEC-CCCCHH T ss_conf 4416999999997----27635999836731448899999987650245455530001145676227999981-666517 Q ss_pred HHHHHHHHHCCCCCCCCC-CEEEEE-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH Q ss_conf 999987542000012233-113331-26897220499999989999899999999999999999999999-------999 Q gi|254780353|r 324 LLMESIFMLSDMETRFPL-NMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK-------GLL 394 (753) Q Consensus 324 ~vl~~Lyk~T~Lq~sf~~-N~~~l~-~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIle-------Gl~ 394 (753) .+++.||++|+||++|++ ||++++ +|+.|+++++++||++|++||.+++.||.+|.|++++.++|+++ +++ T Consensus 535 ~~~~~l~k~~kL~ss~s~~Nm~l~d~~g~i~k~~sl~eIL~~f~~~Rl~~y~kRk~~ll~~l~~eL~~l~~k~rFI~~vi 614 (757) T 3l4j_A 535 TRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMII 614 (757) T ss_dssp HHHHCHHHHTTCEEEEECSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77653665432112352567999848897620189999999999999999999999999999999999872899997754 Q ss_pred HH-----HHHHHHHHHHHHCCCCCCC----------------------------------------CCCCCCCCCHHHHH Q ss_conf 86-----4107899997520000110----------------------------------------00000257757788 Q gi|254780353|r 395 IA-----YLNIDEIIAIIRNEDKPKP----------------------------------------VMVSRFSLTENQVD 429 (753) Q Consensus 395 ~a-----~~~ID~vI~iIR~s~~~k~----------------------------------------~L~~~f~lse~QA~ 429 (753) -. -...|+||+++++++.++. ..++.+..++.|++ T Consensus 615 ~~~I~I~~~~k~eIi~~L~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~yd 694 (757) T 3l4j_A 615 EKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYE 694 (757) T ss_dssp TTSCCCSSSCHHHHHHHHHHTTCCEECSSCCEECCC------------------------------------CTTTCBSH T ss_pred HCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH T ss_conf 11133016888999999996799334466654302304667766543100111210000002344443201001345687 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99887899998899997666789999887765442039788789999999999874177 Q gi|254780353|r 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 (753) Q Consensus 430 aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd 488 (753) |||+|||++||++++++|++|++++++++++|++. +.+.+| .+||.+++++|.+ T Consensus 695 YLL~M~L~~LT~eevekL~~E~~~l~~Ei~~L~~~--t~~~lW---~~DL~~l~~e~~k 748 (757) T 3l4j_A 695 YLLGMRIWSLTKERYQKLLKQKQEKETELENLLKL--SAKDIW---NTDLKAFEVGYQE 748 (757) T ss_dssp HHHTSCGGGGSHHHHHHHHHHHHHHHHHHHHHHTC--CHHHHH---HHHHHHHHHHHHH T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHH---HHHHHHHHHHHHH T ss_conf 99838588877999999999999999999999868--999999---9999999999999 No 9 >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Probab=100.00 E-value=0 Score=377.41 Aligned_cols=239 Identities=18% Similarity=0.215 Sum_probs=215.0 Q ss_pred CCCCCCCEEEEECCCEEECCCCCCC---CCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCC--CCCCC Q ss_conf 2456670599871010202565544---553223455555401211114781789806882787551121212--34444 Q gi|254780353|r 514 MIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGE 588 (753) Q Consensus 514 lI~~E~v~V~LS~~GyIKr~k~~~~---~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~--~~kG~ 588 (753) ||++|+|+|++|++|||||++..++ +..+..+|++|++.+++.|+|||+||||||.||+|++++|+||.+ +++|. T Consensus 1 LI~~E~vvV~lS~~GyIKr~~~~~~~~~~~~~~~~k~~D~v~~~~~~~t~d~ll~fT~~Grvy~i~v~eiP~~~~~~~G~ 80 (323) T 1wp5_A 1 MVASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323) T ss_dssp CCSCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE T ss_pred CCCCCCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEEEECCCCCCCCCCC T ss_conf 98888789999379858980679931147887865788438999998589879999389879999905287753335783 Q ss_pred CCCCCCCCCCCCEEEEEEEEC---CCCEEEEEECCCCEEEEEHHHHHCCCC-CCEEEEEECCCCCEEEEEECCC-CEEEE Q ss_conf 222235767653078999857---998599997489789963887402333-5627885368980568896189-80999 Q gi|254780353|r 589 AIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG-DHVAV 663 (753) Q Consensus 589 pI~~ll~l~~~EkIv~~~~~~---~~~~lll~Tk~G~ikr~~l~~~~~~~k-~Gk~~ikLk~~D~li~v~~~~~-d~iil 663 (753) ||.++++++++|+|+++++.+ ++.+++|+|++|++||+++++|.++++ +|+.+++|+++|+++++..+.+ +++++ T Consensus 81 ~i~nll~l~~~e~ii~~~~~~~~~~~~~ll~~Tk~G~iKr~~l~e~~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l 160 (323) T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323) T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEHHHHCCCCCCCHHEEEECCCCCCCCCEEECCCCEEEEE T ss_conf 12122566667635650344545567469999888823386556610112333000243366555551684389848997 Q ss_pred EECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCC Q ss_conf 95699389955787783361-21413342187875689997338883699941775664511432254441366602755 Q gi|254780353|r 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742 (753) Q Consensus 664 iT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~~~~~~~~~~~e~~~il~~t~~g~~k~~~~~~~~~~~RggkG~~~~k 742 (753) +|++|++|||++++||+||| ++||++|+|++++.+..+++..+++..++..+++|++|+++..+|+.++||++|+++++ T Consensus 161 ~t~~G~~lrf~~~~vr~~gr~a~GVk~i~L~~~D~vv~~~~v~~~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~kGv~~~k 240 (323) T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323) T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC T ss_pred EECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCEEECCHHHHHHCCCCCCCEEEEC T ss_conf 40498289703454234687656730202478988999999960572699985088147511456331155788706101 Q ss_pred CCCCCCCEEC Q ss_conf 2677686104 Q gi|254780353|r 743 GFPRSGKFLS 752 (753) Q Consensus 743 ~~~K~gklV~ 752 (753) .++++|.+|+ T Consensus 241 ~~k~~~~~v~ 250 (323) T 1wp5_A 241 ELKANPHRIS 250 (323) T ss_dssp CCSSSCCCEE T ss_pred CCCCCCCEEE T ss_conf 3356782488 No 10 >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Probab=100.00 E-value=0 Score=371.00 Aligned_cols=241 Identities=19% Similarity=0.238 Sum_probs=219.1 Q ss_pred CCCCCCCCEEEEECCCEEECC--------CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCC- Q ss_conf 024566705998710102025--------65544553223455555401211114781789806882787551121212- Q gi|254780353|r 513 AMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG- 583 (753) Q Consensus 513 dlI~~E~v~V~LS~~GyIKr~--------k~~~~~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~- 583 (753) |||++|+|+|+||++|||||+ ++++.+.+++++|++|++.+++.|+|||+|+|||++|++|++++|+||.+ T Consensus 2 dlI~~e~v~V~lT~~GyiKR~~~~~~~~q~rg~~g~~~~~~k~~D~~~~~~~~~t~d~ll~fT~~G~vy~l~v~~iP~~~ 81 (370) T 3l6v_A 2 DLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370) T ss_dssp CCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC T ss_pred CCCCCCCEEEEEECCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCC T ss_conf 86778888999958986897317996420268988323625788538999998089879999389779999830176778 Q ss_pred -CCCCCCCCCCCCCCCCCEEEEEEEEC---CCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCCEEEEEECCC- Q ss_conf -34444222235767653078999857---9985999974897899638874023335627885368980568896189- Q gi|254780353|r 584 -RGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658 (753) Q Consensus 584 -~~kG~pI~~ll~l~~~EkIv~~~~~~---~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D~li~v~~~~~- 658 (753) +++|.|+.++++++++|+|+++++.. ++.+++|+|++|++||+++++|.+.+++|+.+++|+++|+++++..+.+ T Consensus 82 ~~~~G~~l~~ll~~~~~e~i~~~~~~~~~~~~~~lv~~T~~G~iKr~~l~~f~~~~~~g~~aikLk~~Delv~v~~~~~~ 161 (370) T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370) T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC T ss_pred CCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEECCHHHHHHCCCCCCEEEECCCCCEEEEEEEECCC T ss_conf 66668160001355778616899990446777669999789858966579941113354078984899879978974598 Q ss_pred CEEEEEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCCEEEEEEEECC------------------------------- Q ss_conf 8099995699389955787783361-21413342187875689997338------------------------------- Q gi|254780353|r 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC------------------------------- 706 (753) Q Consensus 659 d~iiliT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~~~~~~~~~~~------------------------------- 706 (753) ++|+++|++|++|||++++||+||| ++||++|+|++++.+..+++..+ T Consensus 162 ~~i~l~T~~G~~lrf~~~~v~~~gr~a~GVk~i~L~~~d~vv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (370) T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVA 241 (370) T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC------------------------------ T ss_pred EEEEEEECCCEEEEEEECEECCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC T ss_conf 13999931651899860113236876564366770899989998964155543211002200110013454431000001 Q ss_pred ---CCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECC Q ss_conf ---88369994177566451143225444136660275526776861049 Q gi|254780353|r 707 ---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 (753) Q Consensus 707 ---e~~~il~~t~~g~~k~~~~~~~~~~~RggkG~~~~k~~~K~gklV~A 753 (753) +...++.+|++|++|+++..+|+.++||++|+++++..+++|++|+| T Consensus 242 ~~~~~~~ll~vT~~G~~Kr~~~~e~~~~~Rg~~G~~~~k~~~~~d~lv~~ 291 (370) T 3l6v_A 242 DNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 291 (370) T ss_dssp -----CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEE T ss_pred CCCCCEEEEEECCCCCEEECCHHHCCCCCCCCCCEEEEEECCCCCEEEEE T ss_conf 36785079997168842767777657335886651666874787349999 No 11 >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Probab=100.00 E-value=0 Score=364.07 Aligned_cols=242 Identities=21% Similarity=0.330 Sum_probs=217.8 Q ss_pred HHCCCCCCCCEEEEECCCEEECC--------CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCC Q ss_conf 10024566705998710102025--------6554455322345555540121111478178980688278755112121 Q gi|254780353|r 511 QQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582 (753) Q Consensus 511 ~EdlI~~E~v~V~LS~~GyIKr~--------k~~~~~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips 582 (753) .||||++|+|+|++|++|||||+ ++++.+.+++++|++|.+.+.+.|+|||+|+|||+.|++|++++|+||. T Consensus 1 ~EdlI~~e~v~v~lT~~GyiKR~~~~~~~~q~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~G~~y~i~v~~Ip~ 80 (312) T 1suu_A 1 MSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 80 (312) T ss_dssp -------CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC T ss_pred CCCCCCCCCEEEEEECCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEEEECCC T ss_conf 96556888889999689878874079975114788873345146896799999953886389987888499988453000 Q ss_pred C--CCCCCCCCCCCCCCCCCEEEEEEEE---CCCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCCEEEEEECC Q ss_conf 2--3444422223576765307899985---7998599997489789963887402333562788536898056889618 Q gi|254780353|r 583 G--RGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 (753) Q Consensus 583 ~--~~kG~pI~~ll~l~~~EkIv~~~~~---~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D~li~v~~~~ 657 (753) . +++|+||.++++++++|+|++++.. +++++++|+|++|++||+++++|...+++|+.+++|+++|+++++..+. T Consensus 81 ~~~~~~G~~i~~ll~l~~~e~ii~~~~~~~~~~~~~lvl~Tk~G~iKr~~l~~~~~~~~~g~~a~kL~~~D~lv~v~~~~ 160 (312) T 1suu_A 81 SSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 160 (312) T ss_dssp -------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC T ss_pred CCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHCCCCEEEECCCCCCEEEEEEEEC T ss_conf 57133780801333788763177603674314301599995067155662588310140211663168997788899907 Q ss_pred C-CEEEEEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCHHHHCCCCCCCC Q ss_conf 9-8099995699389955787783361-2141334218787568999733888369994177566451143225444136 Q gi|254780353|r 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 (753) Q Consensus 658 ~-d~iiliT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~~~~~~~~~~~e~~~il~~t~~g~~k~~~~~~~~~~~Rgg 735 (753) + ++++++|++|+++||+++++|++|| ++||++|+|++++.+..+. ...++..++.+|++|++|+++..+|+.++||+ T Consensus 161 ~~~~i~i~t~~G~~lrf~~~ei~~~gr~a~GVk~i~L~~~d~v~~~~-~~~~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~ 239 (312) T 1suu_A 161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVL-SVKENPYLLIVSENGYGKRLNMSKISELKRGA 239 (312) T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEE-ECTTCSEEEEEETTSEEEEEEGGGSCBCCTTC T ss_pred CCCEEEEECCCCCEEEEEHHCCCCCCCCCCCCCCEEECCCCEEEEEE-EECCCCEEEEEECCCCEEECCCHHHHCCCCCC T ss_conf 98347875478706984033065458776782024726998599999-73588629888369966984623420025577 Q ss_pred CCCCCCCCCC-CCCCEECC Q ss_conf 6602755267-76861049 Q gi|254780353|r 736 VGSLVPKGFP-RSGKFLSS 753 (753) Q Consensus 736 kG~~~~k~~~-K~gklV~A 753 (753) +|+++++..+ ++|++|++ T Consensus 240 ~Gv~~~k~~~~~~~~vv~~ 258 (312) T 1suu_A 240 TGYTSYKKSDKKAGSVVDA 258 (312) T ss_dssp CCEECSCTTCTTTCSEEEE T ss_pred CCEEEEEECCCCCCCEEEE T ss_conf 7659898047888748999 No 12 >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Probab=100.00 E-value=1.4e-45 Score=361.57 Aligned_cols=236 Identities=20% Similarity=0.251 Sum_probs=214.5 Q ss_pred CCCCEEEEECCCEEECC--------CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCC--CCC Q ss_conf 66705998710102025--------65544553223455555401211114781789806882787551121212--344 Q gi|254780353|r 517 KEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586 (753) Q Consensus 517 ~E~v~V~LS~~GyIKr~--------k~~~~~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~--~~k 586 (753) +|+|+|++|++|||||+ ++++.+.++.++|++|++.+++.|+|||+|+||||.|++|++++|+||.. +++ T Consensus 2 eEdv~V~ls~~GyiKR~~~~~y~~q~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fTn~G~~~~~~v~eIp~~~~~~~ 81 (307) T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307) T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC T ss_pred CCCEEEEEECCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCC T ss_conf 76799999689868874289975214689983345037895589999971898799992797599999202742123467 Q ss_pred CCCCCCCCCCCCCCEEEEEEEEC---CCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCCEEEEEECCC-CEEE Q ss_conf 44222235767653078999857---9985999974897899638874023335627885368980568896189-8099 Q gi|254780353|r 587 GEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662 (753) Q Consensus 587 G~pI~~ll~l~~~EkIv~~~~~~---~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D~li~v~~~~~-d~ii 662 (753) |.||.+++++.++|+|+++++.+ ++.+++++|++|++||+++++|...+++|+.+++|+++|+|++|..+.+ ++++ T Consensus 82 G~~i~~ll~l~~~E~i~~~~~~~~~~~~~~l~~~T~~G~iKr~~l~~f~~~r~~g~~ai~L~~~Delv~v~~~~~~~~v~ 161 (307) T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVM 161 (307) T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEE T ss_pred CCCHHEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEE T ss_conf 82855040688885489998123356674499996787178730310257673570877558999999999947997399 Q ss_pred EEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCC Q ss_conf 995699389955787783361-2141334218787568999733888369994177566451143225444136660275 Q gi|254780353|r 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741 (753) Q Consensus 663 liT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~~~~~~~~~~~e~~~il~~t~~g~~k~~~~~~~~~~~RggkG~~~~ 741 (753) ++|++|+++||++++||++|| ++||++|+|++++.+..+. ..+++..++..+++|++|+++..+|+.++||++|++++ T Consensus 162 l~T~~G~~lrf~~~~v~~~gr~a~GV~gi~L~~~d~vv~~~-~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~ 240 (307) T 1zi0_A 162 LFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISI 240 (307) T ss_dssp EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEE-CCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESS T ss_pred EEECCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEE-ECCCCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEE T ss_conf 99838748986033000378888776705708999999998-61387169987448605994021431204565571422 Q ss_pred CCCCCCCCEECC Q ss_conf 526776861049 Q gi|254780353|r 742 KGFPRSGKFLSS 753 (753) Q Consensus 742 k~~~K~gklV~A 753 (753) +..++++.+|++ T Consensus 241 k~~~~~~~~v~~ 252 (307) T 1zi0_A 241 KVTERNGLVVGA 252 (307) T ss_dssp CCCTTTCSEEEE T ss_pred ECCCCCCCEEEE T ss_conf 025667738999 No 13 >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 1.70A {Escherichia coli} Probab=100.00 E-value=2.4e-43 Score=343.81 Aligned_cols=232 Identities=25% Similarity=0.477 Sum_probs=202.7 Q ss_pred CCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCC Q ss_conf 67059987101020256554455322345555540121111478178980688278755112121234444222235767 Q gi|254780353|r 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 (753) Q Consensus 518 E~v~V~LS~~GyIKr~k~~~~~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~~~kG~pI~~ll~l~ 597 (753) |||+|+||++||||++++|+.+.+++++|+||++.+++.|+|||+|||||+.|++|++++|+||+++++|+|+.+++.++ T Consensus 2 E~vtV~lS~~G~Ir~~kg~~~~~~~~~~Ke~D~~~~~~~~~t~d~ll~FTn~G~~y~~~v~~ip~~~~~~~~~~~~~~~~ 81 (256) T 1zvt_A 2 EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256) T ss_dssp CEEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC T ss_pred CCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCC T ss_conf 89799992897388004888881217457888116999985898899994898799997600411124567844434344 Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCCEEEEEECCC--CEEEEEECCCCEEEEEH Q ss_conf 6530789998579985999974897899638874023335627885368980568896189--80999956993899557 Q gi|254780353|r 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSI 675 (753) Q Consensus 598 ~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D~li~v~~~~~--d~iiliT~~Gk~LrF~~ 675 (753) .++.++.+..++++.+++++|++|++||+++++|.+.+++|+.+++++++|+++.+..+.+ ++++++|++|++|||+. T Consensus 82 ~~~~~i~~~~~~~~~~ll~~T~~G~ikr~~l~~~~~~~~~Gk~~~~l~~~d~~i~~~~v~~~~~~i~l~t~~G~~l~f~~ 161 (256) T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256) T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEG T ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEH T ss_conf 45531345540688429999689779998725500502357500225778832555996488549999868992898566 Q ss_pred HHCCCCCHHHCCEEEECCC------CCEEEEEEEECCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 8778336121413342187------8756899973388836999417756645114322544413666027552677686 Q gi|254780353|r 676 DQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 (753) Q Consensus 676 ~eIr~~gRgkGVk~i~Lkd------~~~~~~~~~~~~e~~~il~~t~~g~~k~~~~~~~~~~~RggkG~~~~k~~~K~gk 749 (753) +++|.++||+||++|++++ ++.+..+.+...+...++...+++...+..++++|+++||++|++ ++.+.|.++ T Consensus 162 ~ev~~~~rg~Gv~~~~l~~~~~~~~dd~v~~~~v~~~~~~l~v~~~~~~~~~k~~~l~~~~~~R~~kG~~-~~~~~ki~~ 240 (256) T 1zvt_A 162 SDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL-MRGLQRIDR 240 (256) T ss_dssp GGSCBCSSBSCEESSCCCHHHHHTTSSCEEEEEEEC-CCEEEEEETTEEEEECHHHHHTTBCCTTSCCEE-CTTCCSCCE T ss_pred HHCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEECCHHHHHHHHHHCCCCCCC-CCCCCCCCE T ss_conf 8844245888842471064224567747999888589976999989950532899989986542358877-777724772 Q ss_pred E Q ss_conf 1 Q gi|254780353|r 750 F 750 (753) Q Consensus 750 l 750 (753) + T Consensus 241 ~ 241 (256) T 1zvt_A 241 V 241 (256) T ss_dssp E T ss_pred E T ss_conf 8 No 14 >3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 1x75_A* 3kua_A* Probab=99.95 E-value=2e-29 Score=239.21 Aligned_cols=110 Identities=34% Similarity=0.497 Sum_probs=103.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCC----------------- Q ss_conf 9989999899999999999999999999999999864107899997520000---11000000----------------- Q gi|254780353|r 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR----------------- 420 (753) Q Consensus 361 l~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~---~k~~L~~~----------------- 420 (753) -..|+.||.+||+|||+|+|+|+++|+||||||++|++|||+||+|||+|++ |+..||.+ T Consensus 10 ~s~~l~~R~~vItRRt~f~L~Ka~eR~HILeGL~iAl~nID~VI~IIR~S~d~~eAk~~L~~~~w~~~~~~~~~~~~~~~ 89 (156) T 3ku8_A 10 HSSGLVPRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 89 (156) T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHSCEECTTHHHHGGGSSTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCH T ss_conf 05477776668788679779999998999999999999499999999828982689999998530202168999982330 Q ss_pred -----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf -----------------25775778899887899998899997666789999887765442039788 Q gi|254780353|r 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 (753) Q Consensus 421 -----------------f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~ 470 (753) |+||+.||+|||+|||+|||+||++++.+|+++|.++|++|++||+|+++ T Consensus 90 ~~~~~~~~~~~~~~~~~y~LSe~QA~AILemrL~rLT~LE~ekl~~E~~eL~~~I~~l~~IL~~~~r 156 (156) T 3ku8_A 90 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADR 156 (156) T ss_dssp TTSCTTCCTTSEEETTEEECCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHTCCSCC- T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 0020002310034455453799999999996999998778999999999999999999998768888 No 15 >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Probab=99.90 E-value=1.1e-21 Score=180.98 Aligned_cols=182 Identities=15% Similarity=0.246 Sum_probs=127.6 Q ss_pred CCCCEEEEECCCEEECCCCCCC------CCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCC--CCCCC Q ss_conf 6670599871010202565544------553223455555401211114781789806882787551121212--34444 Q gi|254780353|r 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGE 588 (753) Q Consensus 517 ~E~v~V~LS~~GyIKr~k~~~~------~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~--~~kG~ 588 (753) .+..++++|++|+||+.+...+ +...++++++|.+.....++..+.++++|+.|+++.+++.++|.. .++|. T Consensus 113 ~~~~lvl~Tk~G~iKr~~l~~~~~~~~~g~~a~kL~~~D~lv~v~~~~~~~~i~i~t~~G~~lrf~~~ei~~~gr~a~GV 192 (312) T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV 192 (312) T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE T ss_pred CCCEEEEEECCCCEEEEEHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEHHCCCCCCCCCCCC T ss_conf 30159999506715566258831014021166316899778889990798347875478706984033065458776782 Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEEC----CCCCEEEEEECCC-CEEEE Q ss_conf 222235767653078999857998599997489789963887402333562788536----8980568896189-80999 Q gi|254780353|r 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTG-DHVAV 663 (753) Q Consensus 589 pI~~ll~l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk----~~D~li~v~~~~~-d~iil 663 (753) . -+.|.++++++++...+++.+++++|++|++||+++++|...+|.|+.+..++ .++.++.+..+.+ |++++ T Consensus 193 k---~i~L~~~d~v~~~~~~~~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~~Gv~~~k~~~~~~~~vv~~~~v~~~d~i~l 269 (312) T 1suu_A 193 C---GMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILL 269 (312) T ss_dssp E---CCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEE T ss_pred C---CEEECCCCEEEEEEEECCCCEEEEEECCCCEEECCCHHHHCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEE T ss_conf 0---2472699859999973588629888369966984623420025577765989804788874899999689998999 Q ss_pred EECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCCEEEEE Q ss_conf 95699389955787783361-214133421878756899 Q gi|254780353|r 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701 (753) Q Consensus 664 iT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~~~~~~ 701 (753) +|++|+++||++++||.+|| ++||++|+|++++++.+. T Consensus 270 ~T~~g~~ir~~~~~i~~~gR~~~Gv~~~~l~~d~~v~v~ 308 (312) T 1suu_A 270 VSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVS 308 (312) T ss_dssp EETTCEEEEEEGGGSCBCCTTCCCEECSCCSSCCEEEEE T ss_pred EECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEE T ss_conf 958998999984354777877898488988999799999 No 16 >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Probab=99.89 E-value=4.9e-21 Score=176.11 Aligned_cols=183 Identities=17% Similarity=0.250 Sum_probs=151.0 Q ss_pred CCCCEEEEECCCEEECCCCCCC------CCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCC--CCCCC Q ss_conf 6670599871010202565544------553223455555401211114781789806882787551121212--34444 Q gi|254780353|r 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGE 588 (753) Q Consensus 517 ~E~v~V~LS~~GyIKr~k~~~~------~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~--~~kG~ 588 (753) ++...+++|++|++|+.+...+ +...++++++|.+..+..+...+.++++|+.|++.+++..++|.. .++|. T Consensus 112 ~~~~lv~~T~~G~iKr~~l~~f~~~~~~g~~aikLk~~Delv~v~~~~~~~~i~l~T~~G~~lrf~~~~v~~~gr~a~GV 191 (370) T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 191 (370) T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCE T ss_pred CCCEEEEEECCCCEEECCHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEEEECEECCCCCCCCCE T ss_conf 77669999789858966579941113354078984899879978974598139999316518998601132368765643 Q ss_pred CCCCCCCCCCCCEEEEEEEEC-----------------------------------CCCEEEEEECCCCEEEEEHHHHHC Q ss_conf 222235767653078999857-----------------------------------998599997489789963887402 Q gi|254780353|r 589 AIQLLIDLNHNQDIVTAFVYD-----------------------------------STCKLLVVSSKGNAFIVEESEIIA 633 (753) Q Consensus 589 pI~~ll~l~~~EkIv~~~~~~-----------------------------------~~~~lll~Tk~G~ikr~~l~~~~~ 633 (753) . .+.|.++++|+++...+ ++.+++++|++|++||+++++|.. T Consensus 192 k---~i~L~~~d~vv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~vT~~G~~Kr~~~~e~~~ 268 (370) T 3l6v_A 192 R---GIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPR 268 (370) T ss_dssp E---CCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCC T ss_pred E---EEEECCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCHHHCCC T ss_conf 6---6770899989998964155543211002200110013454431000001367850799971688427677776573 Q ss_pred CCC--CCEEEEEEC-CCCCEEEEEECCC-CEEEEEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCCEEEEEE Q ss_conf 333--562788536-8980568896189-8099995699389955787783361-2141334218787568999 Q gi|254780353|r 634 NTR--KGKTFLKVS-SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702 (753) Q Consensus 634 ~~k--~Gk~~ikLk-~~D~li~v~~~~~-d~iiliT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~~~~~~~ 702 (753) ..| +|..++++. .+|+++.+..+.. |+++++|+.|+++||+.++||.+|| ++||++|+|++++.+.++. T Consensus 269 ~~Rg~~G~~~~k~~~~~d~lv~~~~v~~~d~ill~T~~G~~~r~~~~~I~~~gR~t~Gv~~i~L~~~d~v~sv~ 342 (370) T 3l6v_A 269 KGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVE 342 (370) T ss_dssp BCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCBCCSSSCCEESSCCCTTCCEEEEE T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEE T ss_conf 35886651666874787349999992699759999589989998934547678878984768889999999999 No 17 >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Probab=99.88 E-value=1.1e-20 Score=173.40 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=84.7 Q ss_pred CCEEEEECCCEEECCCCCCC------CCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCC--CCCCCCCC Q ss_conf 70599871010202565544------55322345555540121111478178980688278755112121--23444422 Q gi|254780353|r 519 PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590 (753) Q Consensus 519 ~v~V~LS~~GyIKr~k~~~~------~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips--~~~kG~pI 590 (753) .-.+++|++|.||+.....+ +...++++++|.+..+..++..+.++++|+.|++...++.++|. +.++|. T Consensus 110 ~~l~~~T~~G~iKr~~l~~f~~~r~~g~~ai~L~~~Delv~v~~~~~~~~v~l~T~~G~~lrf~~~~v~~~gr~a~GV-- 187 (307) T 1zi0_A 110 VKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV-- 187 (307) T ss_dssp CEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE-- T ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCE-- T ss_conf 449999678717873031025767357087755899999999994799739999838748986033000378888776-- Q ss_pred CCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCE--EEEEECCC-CCEEEEEECCC-CEEEEEEC Q ss_conf 2235767653078999857998599997489789963887402333562--78853689-80568896189-80999956 Q gi|254780353|r 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSE-EKMKLVVKVTG-DHVAVVGE 666 (753) Q Consensus 591 ~~ll~l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk--~~ikLk~~-D~li~v~~~~~-d~iiliT~ 666 (753) .-+.|.++++|+++...+++.+++++|.+|++||+++++|....+.|+ ..+++.+. +.++.+..+.+ |+++++|+ T Consensus 188 -~gi~L~~~d~vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~k~~~~~~~~v~~~~v~~~d~ill~T~ 266 (307) T 1zi0_A 188 -RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITD 266 (307) T ss_dssp -ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEES T ss_pred -EEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEEC T ss_conf -7057089999999986138716998744860599402143120456557142202566773899998289987999918 Q ss_pred CCCEEEEEHHHCCCCCH-HHCCEEEECCCCC Q ss_conf 99389955787783361-2141334218787 Q gi|254780353|r 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696 (753) Q Consensus 667 ~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~ 696 (753) +|+++||+.++||.+|| ++||++|+|++++ T Consensus 267 ~G~~ir~~~~~i~~~gR~t~Gv~li~L~~~d 297 (307) T 1zi0_A 267 AGTLVRTRVSEISIVGRNTQGVILIRTAEDE 297 (307) T ss_dssp SCCEEEEEGGGSCBCCSSCCCEECSCCCTTC T ss_pred CCEEEEEEHHHCCCCCCCCCCEEEEECCCCC T ss_conf 9979998854656678889987979879999 No 18 >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Probab=99.87 E-value=4.6e-20 Score=168.76 Aligned_cols=174 Identities=14% Similarity=0.208 Sum_probs=80.7 Q ss_pred CCEEEEECCCEEECCCCCCC-------CCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCC--CCCCCC Q ss_conf 70599871010202565544-------553223455555401211114781789806882787551121212--344442 Q gi|254780353|r 519 PITVVISNRGWIRSLKSHSV-------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589 (753) Q Consensus 519 ~v~V~LS~~GyIKr~k~~~~-------~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~--~~kG~p 589 (753) .-.+++|++|++|+.+...+ +...++++++|.+..+..++..+.+++.|+.|++...+..++|.. +++|. T Consensus 107 ~~ll~~Tk~G~iKr~~l~e~~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV- 185 (323) T 1wp5_A 107 GYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV- 185 (323) T ss_dssp CEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE- T ss_pred CEEEEEECCCCEEEEEHHHHCCCCCCCHHEEEECCCCCCCCCEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCC- T ss_conf 4699998888233865566101123330002433665555516843898489974049828970345423468765673- Q ss_pred CCCCCCCCCCCEEEEEEEE-CCCCEEEEEECCCCEEEEEHHHHHCCCCCCE--EEEEECC--CCCEEEEEECCC-CEEEE Q ss_conf 2223576765307899985-7998599997489789963887402333562--7885368--980568896189-80999 Q gi|254780353|r 590 IQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSS--EEKMKLVVKVTG-DHVAV 663 (753) Q Consensus 590 I~~ll~l~~~EkIv~~~~~-~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk--~~ikLk~--~D~li~v~~~~~-d~iil 663 (753) ..+.|.++++|+++... +++.+++++|++|++||+++++|...+|.|+ .++++.+ ++.+..+..+++ |++++ T Consensus 186 --k~i~L~~~D~vv~~~~v~~~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~kGv~~~k~~k~~~~~v~~~~v~~~~d~i~i 263 (323) T 1wp5_A 186 --KGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYL 263 (323) T ss_dssp --ECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEE T ss_pred --CCCCCCCCCEEEEEEEEEECCCEEEEEECCCCEEECCHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEECCCCCEEEE T ss_conf --020247898899999996057269998508814751145633115578870610133567824889997689988999 Q ss_pred EECCCCEEEEEHHHCCCCCH-HHCCEEEECCCC Q ss_conf 95699389955787783361-214133421878 Q gi|254780353|r 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 (753) Q Consensus 664 iT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~ 695 (753) +|+.|+++||++++||.+|| ++||++|+|+++ T Consensus 264 ~T~~g~~~r~~~~~i~~~gR~~~Gv~li~l~~~ 296 (323) T 1wp5_A 264 QTEKSFIETIKVGDIRFSDRYSNGSFVLDEEEN 296 (323) T ss_dssp EETTSCEEEEEGGGSCBCCSSSCCEESSCHHHH T ss_pred EECCCEEEEEECCCCCCCCCCCCCEEEEECCCC T ss_conf 959988999870026767886888797988999 No 19 >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} Probab=99.43 E-value=3e-10 Score=94.92 Aligned_cols=180 Identities=16% Similarity=0.305 Sum_probs=126.9 Q ss_pred CCCCEEEEECCCEEECCCCCCC------CC---CCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCCCCCC Q ss_conf 6670599871010202565544------55---32234555554012111147817898068827875511212123444 Q gi|254780353|r 517 KEPITVVISNRGWIRSLKSHSV------DL---SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587 (753) Q Consensus 517 ~E~v~V~LS~~GyIKr~k~~~~------~~---~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~~~kG 587 (753) ..+-.+.+|..|-+..++.+.. |. .-+.+.++..+..++......+++++|..|.++..+..++.+.+..| T Consensus 513 t~d~ll~fT~~Grvy~l~v~~lP~~~~kG~pi~~~l~l~~~E~I~~i~~~~~d~~lll~T~~G~~K~~~l~~~~~~~k~G 592 (716) T 1zvu_A 513 SNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG 592 (716) T ss_dssp SSSCEEEEETTSEEEEECTTTSCCCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTC T ss_pred CCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEHHHHCCCCCCC T ss_conf 57640688358827997414576776788654341047999848998732788679999758958998513610547577 Q ss_pred CCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCEEEEEHHHHHCC-CCCCEEEEEECC------CCCEEEEEECCCC Q ss_conf 4222235767653078999857-9985999974897899638874023-335627885368------9805688961898 Q gi|254780353|r 588 EAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIAN-TRKGKTFLKVSS------EEKMKLVVKVTGD 659 (753) Q Consensus 588 ~pI~~ll~l~~~EkIv~~~~~~-~~~~lll~Tk~G~ikr~~l~~~~~~-~k~Gk~~ikLk~------~D~li~v~~~~~d 659 (753) ..+ +++.+|++++++...+ ++..++++|++|+..+.+.+++... +.+|...|+|++ +|.++++..++.+ T Consensus 593 k~a---ikLke~Deli~~~~~~~~~d~vl~vT~~Gk~lrF~~~ev~~~grg~GVkgikL~~~~~~~~~d~v~~~~v~~~~ 669 (716) T 1zvu_A 593 KAL---ITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQ 669 (716) T ss_dssp EEC---BCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSSBSCEESSCCCHHHHHTTSSCEEEEEEECSS T ss_pred CEE---EEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEEHHHCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCC T ss_conf 377---87689988998999659998899988898299978899886575477120730655555678559999997799 Q ss_pred -EEEEEECCCCEEEEEHHH-CCCC-CHH-HCCEEEECCCCCEEEE Q ss_conf -099995699389955787-7833-612-1413342187875689 Q gi|254780353|r 660 -HVAVVGENRKLLIFSIDQ-IPEM-SRG-KGVRLQSYKDGGISDV 700 (753) Q Consensus 660 -~iiliT~~Gk~LrF~~~e-Ir~~-gRg-kGVk~i~Lkd~~~~~~ 700 (753) .++++|..|.. .....+ -+.. .|| +|+.+++++..+-+.+ T Consensus 670 ~~llv~t~~g~~-k~~~~~~~~~~~~Rg~kG~~~~~~~k~D~~ev 713 (716) T 1zvu_A 670 STLTIHVGKRKI-KLRPEELQKVTGERGRRGTLMRGLQRIDRVEI 713 (716) T ss_dssp CCEEEEETTEEE-EECHHHHTTSBCCTTSCCEECTTCCSCCEEEE T ss_pred CEEEEEECCCEE-EECHHHHHHHCCCCCCCCCCCCCCCCCCCEEE T ss_conf 869999889807-85878830201787888879977766783782 No 20 >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 1.70A {Escherichia coli} Probab=99.16 E-value=3.1e-09 Score=87.29 Aligned_cols=176 Identities=15% Similarity=0.329 Sum_probs=123.6 Q ss_pred CCCCCEEEEECCCEEECCCCCCC--------CCCC-CCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCCCCC Q ss_conf 56670599871010202565544--------5532-23455555401211114781789806882787551121212344 Q gi|254780353|r 516 EKEPITVVISNRGWIRSLKSHSV--------DLSA-LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586 (753) Q Consensus 516 ~~E~v~V~LS~~GyIKr~k~~~~--------~~~~-~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~~~k 586 (753) ...+-++++|+.|.+-.++.+.. +... ..+.+++.+..........+++|.|..|.++..+..++...+.. T Consensus 42 ~t~d~ll~FTn~G~~y~~~v~~ip~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ll~~T~~G~ikr~~l~~~~~~~~~ 121 (256) T 1zvt_A 42 KSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA 121 (256) T ss_dssp ETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTT T ss_pred CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEHHHHCCCCCC T ss_conf 58988999948987999976004111245678444343444553134554068842999968977999872550050235 Q ss_pred CCCCCCCCCCCCCCEEEEEE-EECCCCEEEEEECCCCEEEEEHHHHHCC-CCCCEEEEEECC------CCCEEEEEECCC Q ss_conf 44222235767653078999-8579985999974897899638874023-335627885368------980568896189 Q gi|254780353|r 587 GEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIAN-TRKGKTFLKVSS------EEKMKLVVKVTG 658 (753) Q Consensus 587 G~pI~~ll~l~~~EkIv~~~-~~~~~~~lll~Tk~G~ikr~~l~~~~~~-~k~Gk~~ikLk~------~D~li~v~~~~~ 658 (753) |.-+ +.+.+++.++.+. ..+++..++++|++|++-+.+.+++... +..|..++++++ +|.+..+...++ T Consensus 122 Gk~~---~~l~~~d~~i~~~~v~~~~~~i~l~t~~G~~l~f~~~ev~~~~rg~Gv~~~~l~~~~~~~~dd~v~~~~v~~~ 198 (256) T 1zvt_A 122 GKAL---ITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPP 198 (256) T ss_dssp CEEC---BCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSSBSCEESSCCCHHHHHTTSSCEEEEEEEC- T ss_pred CCCC---CCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECC T ss_conf 7500---2257788325559964885499998689928985668844245888842471064224567747999888589 Q ss_pred CEEEEEECCCCEEEEEHHHCC--CCCHH-HCCEEEECCC Q ss_conf 809999569938995578778--33612-1413342187 Q gi|254780353|r 659 DHVAVVGENRKLLIFSIDQIP--EMSRG-KGVRLQSYKD 694 (753) Q Consensus 659 d~iiliT~~Gk~LrF~~~eIr--~~gRg-kGVk~i~Lkd 694 (753) ++.++++..++..++..+++. .+.|| +|..++.++. T Consensus 199 ~~~l~v~~~~~~~~~k~~~l~~~~~~R~~kG~~~~~~~k 237 (256) T 1zvt_A 199 QSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQR 237 (256) T ss_dssp CCEEEEEETTEEEEECHHHHHTTBCCTTSCCEECTTCCS T ss_pred CCEEEEEECCCEEECCHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 976999989950532899989986542358877777724 No 21 >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Probab=94.61 E-value=0.26 Score=27.74 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=16.6 Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 95242002168999999998640222 Q gi|254780353|r 270 VTEIPYQVQKSRLIEKIAELIIAKRI 295 (753) Q Consensus 270 IteiPy~v~k~~~ie~I~~lv~~~ki 295 (753) =|.||+ -|...+++-+..++++..+ T Consensus 418 aTnIPp-hNp~eVi~~~~~~i~~~~~ 442 (757) T 3l4j_A 418 STYIPP-FNPLEIIKNIRHLMNDEEL 442 (757) T ss_dssp EEEECC-CCHHHHHHHHHHHHTTCCC T ss_pred HCCCCC-CCHHHHHHHHHHHHCCCHH T ss_conf 137789-8868999999998187145 No 22 >1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1 Probab=83.12 E-value=2.2 Score=20.82 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=38.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHC Q ss_conf 7899998899997666789999887765442039788789---9999999998741 Q gi|254780353|r 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN---QIACEIREVKEIF 486 (753) Q Consensus 434 mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~---iI~~EL~eikkkf 486 (753) =||.+..-.-...+++|+++|..+|..|+.|-+.-+.|++ .+..||....+.| T Consensus 39 aRLc~qVd~t~~eLeeEI~~L~~eI~~LE~iqs~aK~LRNKA~~Le~eL~~F~~~f 94 (96) T 1t3j_A 39 ARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999998899999999999999999999999999999878988999999999987 No 23 >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Probab=79.94 E-value=1.1 Score=22.91 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=13.2 Q ss_pred EEEECCCCCCCHHHHHHHHHH Q ss_conf 999524200216899999999 Q gi|254780353|r 268 IVVTEIPYQVQKSRLIEKIAE 288 (753) Q Consensus 268 ivIteiPy~v~k~~~ie~I~~ 288 (753) ++|=-=++++.|+.+.-.++. T Consensus 202 l~vi~a~pg~GKT~~~~~~a~ 222 (444) T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQ 222 (444) T ss_dssp EEEEEECTTSCHHHHHHHHHH T ss_pred EEEEEEECCCCCHHHHHHHHH T ss_conf 899983046662188887899 No 24 >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Probab=74.02 E-value=2.2 Score=20.83 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=14.8 Q ss_pred EEEEECCCCCCCHHHHHHHHHH Q ss_conf 7999524200216899999999 Q gi|254780353|r 267 CIVVTEIPYQVQKSRLIEKIAE 288 (753) Q Consensus 267 ~ivIteiPy~v~k~~~ie~I~~ 288 (753) .++|--=++++.|+.+.-.++. T Consensus 204 ~l~vi~a~pg~GKT~~~~~~a~ 225 (454) T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQ 225 (454) T ss_dssp CEEEEECCTTSCHHHHHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHHH T ss_conf 7799995677653299998997 No 25 >1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A Probab=69.18 E-value=3.7 Score=19.13 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=25.9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11000000257757788998878999988999 Q gi|254780353|r 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 (753) Q Consensus 413 ~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~ 444 (753) ...+++.+|+||++|.+||++.-..+|-.+-. T Consensus 56 De~Ayl~~~~LTeEqr~AV~~rD~~~Li~lGg 87 (139) T 1b4u_A 56 DESAYLDEWNLTPAAKAAVLARDYNAMIDEGG 87 (139) T ss_dssp CHHHHHHTTTCCHHHHHHHHHTCHHHHHHTTC T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 99999870799999999998201999999378 No 26 >3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} Probab=61.14 E-value=6.9 Score=17.06 Aligned_cols=138 Identities=10% Similarity=0.056 Sum_probs=65.8 Q ss_pred CCCCCCCCCCCCHHHHHHHHHC-------------CCCEEEEEEEEEEEE----------------CCCCCEEEEEECCC Q ss_conf 7788776010698899989850-------------334159999999864----------------37884079995242 Q gi|254780353|r 224 PDFPTGGIIVESRESIVESYRL-------------GRGGFRVRARWCVEE----------------VGRGSWCIVVTEIP 274 (753) Q Consensus 224 PDFPTGG~i~~~~~~i~~~y~t-------------G~G~i~~r~k~~~e~----------------~~~~~~~ivIteiP 274 (753) +=||||+.++...-.+.++... |--++.+|.+ ++|- ++.=+.+|+|+.+| T Consensus 791 iv~p~~~~~~~~~~~~~~~~~~~~~pd~~~~~ilsg~~~~~~~~~-~~e~d~~~d~~~~~~~y~~~ls~~~erl~i~~~~ 869 (1333) T 3cnf_A 791 IVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTY-QTEADDDLDEGIRMTTYDQYLSHIRERLHITNVP 869 (1333) T ss_pred EECCCCCCCCCCCHHHHHHHHHCCCCCHHEEEEECCCCEEEEEEE-EEECCCCCCCCEEEEEHHHHHHHHHHHEEECCCC T ss_conf 113895112362389999764024741213688326624665335-6411324466268865676544466631001367 Q ss_pred --CCCCHHHHHHHHHHHHHHCCCHHH----HHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf --002168999999998640222134----57764067660588985045458899999875420000122331133312 Q gi|254780353|r 275 --YQVQKSRLIEKIAELIIAKRIPLL----EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348 (753) Q Consensus 275 --y~v~k~~~ie~I~~lv~~~ki~gi----~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf~~N~~~l~~ 348 (753) ..+.++.-.++|+++++.-. .+| .++- .+.-+.-+ +..+|-+++-.+|.-.+--.. ++.-.+ T Consensus 870 ~~~~~~~~~t~~~i~~~l~~~~-~~~~~~~~~~~-----~~~~~~~~--~~~~~~i~~~~~y~v~s~~~~--~~~~~~-- 937 (1333) T 3cnf_A 870 DPIYITGASTPDQIAASVQATH-VAVVLYQSGVI-----NGPASTYL--RENEVLVVMPDYYDVVSRFAN--ANLQMN-- 937 (1333) T ss_pred CCCCCCCCCCHHHHHHHHCCCC-EEEECCCHHHC-----CCCHHHHH--HCCCCEEECCCCCHHHHHHCC--CCCCCC-- T ss_conf 6200013475899999851653-02421511111-----44023333--315850421440001233125--673134-- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 689722049999998999989999999 Q gi|254780353|r 349 GRVPQVMPLDGILKEWLAHRREVLFRR 375 (753) Q Consensus 349 ~~~P~~~~l~eil~~f~~~R~~vi~rr 375 (753) |. -...+..++++.|+..+..-+.+. T Consensus 938 ~n-~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1333) T 3cnf_A 938 NN-RYHESVLEIADIFDQADFIQTSDA 963 (1333) T ss_pred CC-CHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 65-102233102455655444202567 No 27 >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Probab=55.98 E-value=8.3 Score=16.45 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9998877654420397887899999999998741774 Q gi|254780353|r 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753) Q Consensus 453 eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753) ++.+++..|+.++.+.......+.+++.....+...+ T Consensus 160 qles~I~~LQ~~i~~l~~kIq~Leq~Isq~e~kcq~~ 196 (461) T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTP 196 (461) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSB T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 8999999999999999999999999998888751365 No 28 >3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium} Probab=52.06 E-value=8.5 Score=16.38 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=41.4 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCC Q ss_conf 988776544203978878999999999987417743345554200001100000011002456670 Q gi|254780353|r 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 (753) Q Consensus 455 ~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v 520 (753) .....-|+.||.++..++.++...+.++....+.. +|..-+. ..-..+....+.|++|. T Consensus 62 ~~~~~lL~~IL~nd~eIr~Ll~~rmdeL~~li~~~-----~rq~~l~--~aYg~~~g~~l~p~~p~ 120 (122) T 3a7m_A 62 DMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQS-----TRQKSLN--NAYGRLSGMLLVPDAPG 120 (122) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHH--HHHHHHHTCCCCC---- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--HHHHCCCCCCCCCCCCC T ss_conf 99999999999769999999999999999999987-----8668999--99974788714899988 No 29 >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Probab=50.17 E-value=10 Score=15.80 Aligned_cols=44 Identities=7% Similarity=0.089 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHCC Q ss_conf 997666789999887765442039---78878999999999987417 Q gi|254780353|r 444 EYQIKSELDNLLAEKEKIDSLLNS---GKQQWNQIACEIREVKEIFS 487 (753) Q Consensus 444 ~~kl~~E~~eL~~~i~~L~~IL~s---~~~l~~iI~~EL~eikkkfg 487 (753) ....-+++..+.++++++..++++ +..+.....+|+.++.++.. T Consensus 58 ~v~~~~~l~~~~~dl~el~eLl~e~~~D~el~ela~eEl~~~~~~l~ 104 (371) T 1zbt_A 58 TVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKE 104 (371) T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999987999999985136885799999999987554589 No 30 >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Probab=49.27 E-value=10 Score=15.70 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=11.9 Q ss_pred CCCCEEEEECCCEEEC Q ss_conf 6670599871010202 Q gi|254780353|r 517 KEPITVVISNRGWIRS 532 (753) Q Consensus 517 ~E~v~V~LS~~GyIKr 532 (753) +-++.++-|.+|-||. T Consensus 394 ~~~~l~Tgs~D~tv~v 409 (694) T 3dm0_A 394 NADIIVSASRDKSIIL 409 (694) T ss_dssp CCSEEEEEETTSEEEE T ss_pred CCCEEEEEECCCEEEE T ss_conf 9989999936993999 No 31 >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Probab=48.98 E-value=11 Score=15.67 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99998877654420397887899999999998741774 Q gi|254780353|r 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753) Q Consensus 452 ~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753) .++.+++..|+..+.+......-+.+++....++...+ T Consensus 164 ~~ie~qi~~Lq~~l~elq~kIq~LE~qI~q~~ek~~~~ 201 (464) T 1m1j_B 164 NNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCRSP 201 (464) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999999999999999999998788750566 No 32 >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} Probab=45.14 E-value=12 Score=15.26 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=15.8 Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8899887-8999988999976667899998877654 Q gi|254780353|r 428 VDAILNL-RLRSLRKLEEYQIKSELDNLLAEKEKID 462 (753) Q Consensus 428 A~aIL~m-rL~rLt~le~~kl~~E~~eL~~~i~~L~ 462 (753) .+.|+++ .-+|-...+.++++.|.+++.++|..+. T Consensus 29 id~il~Ld~~~r~l~~e~e~Lr~erN~iSKeIg~~k 64 (425) T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLK 64 (425) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999998 No 33 >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Probab=44.45 E-value=12 Score=15.18 Aligned_cols=119 Identities=8% Similarity=0.069 Sum_probs=65.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCHHHHH Q ss_conf 972204999999899998999999999999999999999999998641078999975200-0011000000257757788 Q gi|254780353|r 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVD 429 (753) Q Consensus 351 ~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s-~~~k~~L~~~f~lse~QA~ 429 (753) .|..+.|++.|.....- .+--....+-+++.+++++.-++.. |+-+... .+.+..|.+. . T Consensus 19 Cpt~c~l~d~L~kqe~~-ld~eI~~Le~~l~el~~~l~ele~~----------Iq~Lq~ql~~~~~~Lqq~--------~ 79 (409) T 1m1j_C 19 CPTTCGIADFFNKYRLT-TDGELLEIEGLLQQATNSTGSIEYL----------IQHIKTIYPSEKQTLPQS--------I 79 (409) T ss_dssp EECTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHSCSSTTCCSSC--------H T ss_pred CCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH--------H T ss_conf 88841577999999988-8999999999999999999999999----------999999999999999999--------9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 998878999988999976667899998877654420397887899999999998741774 Q gi|254780353|r 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753) Q Consensus 430 aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753) .-+.-.+..|. -++.+++++..++.++|.+|+..+.........+.+++.++..+...+ T Consensus 80 e~l~q~~~el~-eei~~lk~~I~~~e~qI~eLq~~l~~~~~~I~~LkqkI~qLeqq~qe~ 138 (409) T 1m1j_C 80 EQLTQKSKKII-EEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEP 138 (409) T ss_dssp HHHHHHHHHHH-HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999-999999999999998999999999877765567999999999875011 No 34 >3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Probab=43.87 E-value=12 Score=15.12 Aligned_cols=119 Identities=10% Similarity=0.147 Sum_probs=64.1 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCHHHHH Q ss_conf 9722049999998999989999999999999999999999999986410789999752000011-000000257757788 Q gi|254780353|r 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVD 429 (753) Q Consensus 351 ~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~~k-~~L~~~f~lse~QA~ 429 (753) .|..+.+.+.|..+..- .+-++++.++.+.-++ .....+.+.++-++..-... ..+.+. . T Consensus 19 Cpt~ceLqd~L~kq~~e--------lqk~iqqLe~~l~el~---~~~~elk~~i~~le~~l~e~e~ql~~~--------i 79 (411) T 3ghg_C 19 CPTTCGIADFLSTYQTK--------VDKDLQSLEDILHQVE---NKTSEVKQLIKAIQLTYNPDESSKPNM--------I 79 (411) T ss_dssp EECSHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCTTTCCCTTC--------H T ss_pred CCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--------H T ss_conf 66602689999999999--------9999999999999999---999999999999999999999999999--------9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 998878999988999976667899998877654420397887899999999998741774 Q gi|254780353|r 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753) Q Consensus 430 aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753) .-+.....+|. -+..+++....++.++|..|+..+........-+.+++.++.++...+ T Consensus 80 ~~l~~~~~eL~-eei~~le~~i~~~e~qI~qLq~~l~~l~~~i~~lk~~I~qLeek~~~~ 138 (411) T 3ghg_C 80 DAATLKSRKML-EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 138 (411) T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999-999999999998887777777788999989899999999999764355 No 35 >1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 Probab=41.09 E-value=14 Score=14.82 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=10.4 Q ss_pred CCCEEEEECCCEEE Q ss_conf 67059987101020 Q gi|254780353|r 518 EPITVVISNRGWIR 531 (753) Q Consensus 518 E~v~V~LS~~GyIK 531 (753) +..+|-+-+.||.- T Consensus 167 ~~~Vv~v~q~GY~l 180 (197) T 1dkg_A 167 PGNVLGIMQKGYTL 180 (197) T ss_dssp TTBEEEEEECEEEE T ss_pred CCEEEEEEECCCEE T ss_conf 19589996679087 No 36 >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Probab=35.67 E-value=16 Score=14.23 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 8878999988999976667899998877654420397887899999999998741 Q gi|254780353|r 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 (753) Q Consensus 432 L~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkf 486 (753) ....-..+..++..++.++.++|.++++.+++-+. .+.+++.++.-.- T Consensus 94 ~~~~~~~~~~~~~~~Lk~~~k~Lk~~i~~le~~l~-------ele~~l~~lll~I 141 (484) T 3lss_A 94 GTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQ-------QLEEERDKLMLNV 141 (484) T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC T ss_conf 00000012244699999999999999999999999-------9999999999728 No 37 >3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp} Probab=34.76 E-value=17 Score=14.13 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=40.9 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCC Q ss_conf 98877654420397887899999999998741774334555420000110000001100245667 Q gi|254780353|r 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 (753) Q Consensus 455 ~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI~~E~ 519 (753) .....-|+.||.++..++.++...+.++.+..+.. +|..-+... -..+....+.|.|| T Consensus 65 ~~~~~lL~~IL~ndaeIr~Ll~~rmd~L~~li~q~-----~~q~~l~~a--Ygqf~~~~l~~~~~ 122 (123) T 3nkz_A 65 DLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQS-----TKQQAVNNT--YGQFPDHALLLGET 122 (123) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--HHCCCCCCCCCCCC T ss_conf 99999999999679999999999999999999988-----877899988--85789985789999 No 38 >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.20A {Eubacterium eligens atcc 27750} Probab=33.38 E-value=18 Score=13.97 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=20.3 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 998999989999999999-9999999999999999864107899997520 Q gi|254780353|r 361 LKEWLAHRREVLFRRSSF-RMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409 (753) Q Consensus 361 l~~f~~~R~~vi~rr~~~-~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~ 409 (753) +-.|++.+..-+..+..+ .| -..|+.+|-+|-+| |+..+.-+. T Consensus 33 ~A~~vd~k~~~i~~~~~~~~l--~~~~~avlaaLnia----Del~~~~~~ 76 (138) T 3hnw_A 33 VASYINNKITEFNKEESYRRM--SAELRTDMMYLNIA----DDYFKAKKM 76 (138) T ss_dssp HHHHHHHHHHHHTTCHHHHTS--CHHHHHHHHHHHHH----HHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHH----HHHHHHHHH T ss_conf 999999999999830688889--99999999999889----999988878 No 39 >3gc3_B Arrestin beta-1, clathrin heavy chain 1; protein-protein complex, alternative splicing, phosphoprotein, sensory transduction, acetylation, coated PIT; 2.20A {Bos taurus} PDB: 1utc_A 3gd1_I 1c9i_A 1c9l_A Probab=33.13 E-value=18 Score=13.94 Aligned_cols=34 Identities=6% Similarity=0.027 Sum_probs=21.2 Q ss_pred CCCEEEEEECCC-CEEEEEECCCCEEEEEHHHCCC Q ss_conf 980568896189-8099995699389955787783 Q gi|254780353|r 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680 (753) Q Consensus 647 ~D~li~v~~~~~-d~iiliT~~Gk~LrF~~~eIr~ 680 (753) +|..+++...+. +-+.++|+.|.+..|++..--. T Consensus 258 ~DFPVamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (363) T 3gc3_B 258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (363) T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE T ss_conf 78567898426668899994675899998576627 No 40 >1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Probab=32.72 E-value=18 Score=13.90 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=49.1 Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCC---CCC-CCCCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 426650467777516777889999999998728653201344320367---788-7760106988999898503341599 Q gi|254780353|r 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGP---DFP-TGGIIVESRESIVESYRLGRGGFRV 252 (753) Q Consensus 177 ~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gP---DFP-TGG~i~~~~~~i~~~y~tG~G~i~~ 252 (753) .+|++|.+|.++||= .||.+|...+..+..-+---+++|-.-+ ++. +|+ .+.+.+.+......-.+-+ T Consensus 2 ~~~~~gm~~~~~~~~-----~ei~~a~~~v~~~~~~~~wvi~~~~~~~~~i~v~~~g~---~~~~e~~~~L~~~~~~Y~~ 73 (146) T 1x67_A 2 SSGSSGMAANLSRNG-----PALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGE---GGLEEMVEELNSGKVMYAF 73 (146) T ss_dssp CSSSSSSCCCCCTTH-----HHHHHHHHHHHCSSSSCSEEEEEESSSSSCEEEEEEES---SCHHHHHHHCCTTSEEEEE T ss_pred CCCCCCEEEECCCCC-----HHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCC---CCHHHHHHHCCCCCEEEEE T ss_conf 988773266526897-----79999999998589997589999828974899962688---9999999767855627999 Q ss_pred EEEEEEEECCCCC-EEEEEECCCCCCC Q ss_conf 9999986437884-0799952420021 Q gi|254780353|r 253 RARWCVEEVGRGS-WCIVVTEIPYQVQ 278 (753) Q Consensus 253 r~k~~~e~~~~~~-~~ivIteiPy~v~ 278 (753) +.++.....+ +-+.|+=.|-+++ T Consensus 74 ---~r~~~~~~~~~K~vfI~w~p~~~~ 97 (146) T 1x67_A 74 ---CRVKDPNSGLPKFVLINWTGEGVN 97 (146) T ss_dssp ---EEEECSSSCSEEEEEEEEECTTSC T ss_pred ---EEEECCCCCCCCEEEEEECCCCCC T ss_conf ---999538986222899996576799 No 41 >3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, structural genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Probab=29.56 E-value=19 Score=13.70 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=5.3 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999998640 Q gi|254780353|r 281 RLIEKIAELIIA 292 (753) Q Consensus 281 ~~ie~I~~lv~~ 292 (753) .++.+|.+++++ T Consensus 69 ~iL~~i~~~l~~ 80 (368) T 3kjd_A 69 QSLKKIEDCIRA 80 (368) T ss_dssp HHHHHHHHHHHT T ss_pred HHHHHHHHHHHC T ss_conf 999999999855 No 42 >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane protein; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Probab=29.20 E-value=21 Score=13.48 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=13.7 Q ss_pred CCCEEEEEECCC-CEEEEEECCCCEEEEEHHH Q ss_conf 980568896189-8099995699389955787 Q gi|254780353|r 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677 (753) Q Consensus 647 ~D~li~v~~~~~-d~iiliT~~Gk~LrF~~~e 677 (753) +|..+++...+. +-+.++|+.|.+..|++.. T Consensus 258 ~DFPVamqvs~kygviyviTK~G~i~lyDleT 289 (494) T 1bpo_A 258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (494) T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTT T ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEECCC T ss_conf 78665898605568899995674899998566 No 43 >1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers, PALM, thumb, right hand configuration, viral protein; 2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A* 1n1h_A* 1n35_A* 1n38_A* 1uon_A* 2cse_1 Probab=28.43 E-value=19 Score=13.77 Aligned_cols=139 Identities=13% Similarity=0.224 Sum_probs=59.2 Q ss_pred HHHHHHHHHCCCCEEEEEEEEEEEECCCCCEE---EEEECCCCC------CCHHHHHH------------HHHHHHHHCC Q ss_conf 88999898503341599999998643788407---999524200------21689999------------9999864022 Q gi|254780353|r 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWC---IVVTEIPYQ------VQKSRLIE------------KIAELIIAKR 294 (753) Q Consensus 236 ~~~i~~~y~tG~G~i~~r~k~~~e~~~~~~~~---ivIteiPy~------v~k~~~ie------------~I~~lv~~~k 294 (753) ...+..+|++|-|.+.=.-.|. | .+.+++ +=++.|--+ ++..+..+ .|....++-. T Consensus 279 ~~sLHsMYR~~~gG~~P~ieW~-E--PRskY~F~~~Gv~~l~~~~~~~~p~~d~~~~~~~~~ygL~dv~~~i~~~~~~~~ 355 (1267) T 1muk_A 279 QNTLHSMYESLEGGYCPNLEWL-E--PRSDYKFMYMGVMPLSAKYARSAPSNDKKARELGEKYGLSSVVGELRKRTKTYV 355 (1267) T ss_dssp HTTGGGCCSSCCEEEEEEEEEC-S--SGGGCBEEEEEEEECCGGGSCCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHTCC T ss_pred CCHHHHHHHHCCCCCCCCEEEC-C--CCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCC T ss_conf 1029999872468756611323-7--665544899514763545456898763789999987286999999999860476 Q ss_pred ---CHHHHHHHHCCC-CCEEEEEEEECCCCCHHHHHHHHHHHCCC-CCCCC--------CCEEEEECCCCCCCCCHHHHH Q ss_conf ---213457764067-66058898504545889999987542000-01223--------311333126897220499999 Q gi|254780353|r 295 ---IPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDM-ETRFP--------LNMNVLSMGRVPQVMPLDGIL 361 (753) Q Consensus 295 ---i~gi~dirDeSd-~~~~~vi~~~~r~~~~~~vl~~Lyk~T~L-q~sf~--------~N~~~l~~~~~P~~~~l~eil 361 (753) -.-+.-|||--. -.|+.++ |. -.+.||. =|..++. +.-+. -|.-.|- +. .....+-+- T Consensus 356 ~H~~dSvr~VRDvMa~TSg~flV----R~-pTesVL~-EYsQ~P~Ik~PIp~s~wtgpIGnvRyL~-~~--~~~pa~~Ly 426 (1267) T 1muk_A 356 KHDFASVRYIRDAMACTSGIFLV----RT-PTETVLQ-EYTQSPEIKVPIPQKDWTGPIGEIRILK-DT--TSSIARYLY 426 (1267) T ss_dssp EESHHHHHHHHHHHTSSCCCBCC----CC-HHHHHHH-HSSCCCCCSSCCCGGGEEEEETTEEEEC-TT--CCSTHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCEEEE----CC-CHHHHHH-HHCCCCCCCCCCCHHHCCCCCCCEEEEC-CC--CCCHHHHHH T ss_conf 66605889999988643641686----28-6089999-7357985458898676468766367614-56--786479999 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHH Q ss_conf 989999899999999999-9999999 Q gi|254780353|r 362 KEWLAHRREVLFRRSSFR-MQAIDRR 386 (753) Q Consensus 362 ~~f~~~R~~vi~rr~~~~-L~k~~~R 386 (753) +.|.+--.++..+..-+| |.++--| T Consensus 427 ~~Wr~AA~~v~~~p~t~DpL~QaImr 452 (1267) T 1muk_A 427 RTWYLAAARMAAQPRTWDPLFQAIMR 452 (1267) T ss_dssp HHHHHHHHHHHHCGGGGCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 99999999997097655778999877 No 44 >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A Probab=28.00 E-value=21 Score=13.34 Aligned_cols=25 Identities=8% Similarity=0.291 Sum_probs=10.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 049999998999989999999999999 Q gi|254780353|r 355 MPLDGILKEWLAHRREVLFRRSSFRMQ 381 (753) Q Consensus 355 ~~l~eil~~f~~~R~~vi~rr~~~~L~ 381 (753) .++-++.+.|+.+. -++.-|.|.|+ T Consensus 544 ~Di~~IvD~F~~~n--~iqe~TsfLLd 568 (1630) T 1xi4_A 544 ADITQIVDVFMEYN--LIQQCTAFLLD 568 (1630) T ss_pred CCHHHHHHHHHHHC--HHHHHHHHHHH T ss_conf 68999999999605--49899999999 No 45 >2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Probab=27.54 E-value=22 Score=13.28 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=23.4 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 8999975200001100000025775778899887899998 Q gi|254780353|r 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 (753) Q Consensus 401 D~vI~iIR~s~~~k~~L~~~f~lse~QA~aIL~mrL~rLt 440 (753) ++||.. +-+.-..+++++.|||.|...|=|+|=|-=. T Consensus 38 e~Iv~l---pv~eF~elL~~~~Lte~Ql~lirDIRRRGKN 74 (91) T 2kz5_A 38 DKIVNL---PVDDFNELLARYPLTESQLALVRDIRRRGKN 74 (91) T ss_dssp HHHHHS---CHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH T ss_pred HHHHHC---CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC T ss_conf 999868---7999999998479999999999999980223 No 46 >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic gene regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Probab=27.45 E-value=16 Score=14.33 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=27.3 Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHCCHHHCCCCCCCCCCCCC Q ss_conf 66654276887---478999999961001321661326788708 Q gi|254780353|r 79 VGEVIGKLHPH---GDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119 (753) Q Consensus 79 vg~v~gkyhPH---Gd~s~y~a~v~maq~~~~~~pli~g~GnfG 119 (753) |+++|- +|- .|+++++|+-.|.+.---..|.+|..|.|. T Consensus 19 v~dims--~pv~V~~~~tv~ea~~~m~~~~~~~l~Vvd~~~~~~ 60 (159) T 3fv6_A 19 VKDFQS--IPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLV 60 (159) T ss_dssp GGGSCB--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE T ss_pred HHHHCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEE T ss_conf 999578--995999929799999999974996899996997399 No 47 >3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Bordetella bronchiseptica} Probab=27.41 E-value=22 Score=13.26 Aligned_cols=36 Identities=3% Similarity=0.065 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 998877654420397887899999999998741774 Q gi|254780353|r 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753) Q Consensus 454 L~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753) ......-++.||.++..++.++...+.++...++.. T Consensus 74 ~~~k~~lL~~IL~nDaeIR~Ll~prldeL~~l~~~~ 109 (126) T 3h3m_A 74 RGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRM 109 (126) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999869999999999999999999888 No 48 >1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* 1re4_C* 2ffd_C* ... Probab=27.08 E-value=22 Score=13.22 Aligned_cols=42 Identities=7% Similarity=0.116 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 766678999988776544203978878999999999987417 Q gi|254780353|r 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 (753) Q Consensus 446 kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfg 487 (753) +++.+......+|..|+..|.........+.+++.++..+-. T Consensus 8 ~~e~~i~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~ 49 (319) T 1fzc_C 8 KYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319) T ss_dssp --CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999876999999999999999999999999999999874 No 49 >2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} Probab=26.64 E-value=7.8 Score=16.64 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=31.6 Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 952420021689999999986402221345776406766058898504545889999987542 Q gi|254780353|r 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332 (753) Q Consensus 270 IteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~ 332 (753) +++|| ++. .++.++|.+++++|+++.+.+++.+......- + ..=.+.-|... .+||+. T Consensus 59 l~~ip-GIG-~~i~~kI~Eil~TG~l~~le~l~~~~~~~~~~-l-~~I~GvGpk~A-~~l~~~ 116 (578) T 2w9m_A 59 FTGIP-KVG-KGIAAELSDFARSGTFAPLEAAAGQLPPGLLD-L-LGVRGLGPKKI-RSLWLA 116 (578) T ss_dssp CCSST-TCC-HHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHH-H-TTSTTCCHHHH-HHHHHT T ss_pred HHCCC-CCC-HHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHH-H-HCCCCCCHHHH-HHHHHH T ss_conf 73699-976-89999999999869868999986346177999-8-47898689999-999980 No 50 >1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization, HDV; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A Probab=26.06 E-value=23 Score=13.09 Aligned_cols=33 Identities=15% Similarity=0.550 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999899998999999999999999999999999 Q gi|254780353|r 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392 (753) Q Consensus 358 ~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleG 392 (753) .++|..|++-|... ...+-+|.|+++.+.-||- T Consensus 3 EeiLeqWV~~Rk~~--eelEr~lRk~kkkikkLEd 35 (50) T 1a92_A 3 EDILEQWVSGRKKL--EELERDLRKLKKKIKKLEE 35 (50) T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHC T ss_conf 88999999988769--9999999999988887511 No 51 >2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis} Probab=25.56 E-value=24 Score=13.03 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=20.3 Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC Q ss_conf 1677788999999999872865320134432036778 Q gi|254780353|r 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226 (753) Q Consensus 190 ~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDF 226 (753) .+||||+.-=-.-+-.++.+|++ ..+.+..+.-=|| T Consensus 25 ~~~P~~~eaEkaVLg~lL~~~~~-~~~i~~~L~~edF 60 (200) T 2r5u_A 25 RQPPQDLAAEQSVLGGMLLSKDA-IADVLERLRPGDF 60 (200) T ss_dssp -CCSCCHHHHHHHHHHHHHCHHH-HHHHHTTCCTTCC T ss_pred CCCCCCHHHHHHHHHHHHCCHHH-HHHHHHHCCHHHC T ss_conf 99999899999999999949407-9999975799877 No 52 >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Probab=24.93 E-value=14 Score=14.85 Aligned_cols=10 Identities=0% Similarity=0.275 Sum_probs=3.5 Q ss_pred CCCCEEEEEC Q ss_conf 4781789806 Q gi|254780353|r 559 TTDRILLLST 568 (753) Q Consensus 559 t~d~LLffTs 568 (753) +.+.+...-+ T Consensus 270 s~~~IyA~GD 279 (452) T 3oc4_A 270 SVPNVFAIGD 279 (452) T ss_dssp SSTTEEECGG T ss_pred CCCCEEEEEC T ss_conf 9899999979 No 53 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Probab=23.68 E-value=17 Score=14.11 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=17.2 Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 37884079995242002168999999998640 Q gi|254780353|r 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292 (753) Q Consensus 261 ~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~ 292 (753) +.+|.+.++|..+ +.+..=+....+++++ T Consensus 114 l~~G~rVLIVDDv---l~TGgT~~a~~~ll~~ 142 (186) T 1l1q_A 114 LGPHDVVLLHDDV---LATGGTLLAAIELCET 142 (186) T ss_dssp CCTTCCEEEEEEE---ESSSHHHHHHHHHHHH T ss_pred CCCCCEEEEEEEH---HHHCHHHHHHHHHHHH T ss_conf 3789989999534---3316489999999998 No 54 >1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34 Probab=23.66 E-value=25 Score=12.78 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=16.3 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 77775167778899999999987 Q gi|254780353|r 185 VGMATSIPSHNVQEICEAALALI 207 (753) Q Consensus 185 vG~at~ipphnl~ev~~a~~~~i 207 (753) +||-||.++-.+.-+..-+..++ T Consensus 14 ~GMLtN~~slpleRIh~mLkmfv 36 (74) T 1ldd_A 14 EGMLTNLGAMKLHKIHSFLKITV 36 (74) T ss_dssp HHHHHHHCSEEHHHHHHHHHHHS T ss_pred HHHHHCCCCCCHHHHHHHHHHHC T ss_conf 99997678787999999999875 No 55 >2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} Probab=23.32 E-value=26 Score=12.73 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=34.4 Q ss_pred CEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCC---CCCCCCCCCCCCCC Q ss_conf 803540536665427688747899999996100132166---13267887088677 Q gi|254780353|r 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY---PLISGQGNFGNIDG 123 (753) Q Consensus 71 ~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~maq~~~~~~---pli~g~GnfGs~~~ 123 (753) ||.-||+|.- | +| -||..+....|++|....... |=.--.-|||-+.- T Consensus 32 p~I~saNIAC---G-~H-AGD~~~m~~tv~lA~~~~V~IGAHPsypD~~gFGRr~~ 82 (252) T 2x5e_A 32 PLVDQANLAC---G-FH-AGDPLTMRRAVELAVRHGVSIGAHPAYPDLSGFGRRSL 82 (252) T ss_dssp GGCSEEEEEC---S-SS-SCCHHHHHHHHHHHHHTTCEEEEECCCSCTTTTTCSCC T ss_pred HHHHHHHHHC---C-CC-CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC T ss_conf 6752588850---6-25-67999999999999985997836899876578999988 No 56 >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Probab=23.20 E-value=19 Score=13.82 Aligned_cols=13 Identities=0% Similarity=0.038 Sum_probs=7.2 Q ss_pred CCCHHHHHHHHHH Q ss_conf 2049999998999 Q gi|254780353|r 354 VMPLDGILKEWLA 366 (753) Q Consensus 354 ~~~l~eil~~f~~ 366 (753) +.+..++|+.+.+ T Consensus 123 iVt~~Dil~~~~~ 135 (160) T 2o16_A 123 IITDSDFVTIAIN 135 (160) T ss_dssp EECHHHHHHHHHH T ss_pred EEEHHHHHHHHHH T ss_conf 9999999999987 No 57 >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Probab=22.70 E-value=27 Score=12.65 Aligned_cols=24 Identities=4% Similarity=0.328 Sum_probs=18.4 Q ss_pred CEEEEEECCCCCCCHHHHHHHHHH Q ss_conf 407999524200216899999999 Q gi|254780353|r 265 SWCIVVTEIPYQVQKSRLIEKIAE 288 (753) Q Consensus 265 ~~~ivIteiPy~v~k~~~ie~I~~ 288 (753) ..+|-|.-|||.++...|.+.... T Consensus 17 ~~~v~v~nLP~~~te~dI~~~F~~ 40 (118) T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSD 40 (118) T ss_dssp CCEEEEESCCTTCCHHHHHHHTTT T ss_pred CEEEEEECCCCCCCHHHHHHHHHH T ss_conf 679999298985979999999874 No 58 >1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A* Probab=22.66 E-value=18 Score=13.83 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=10.7 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 77601069889998985033415999 Q gi|254780353|r 228 TGGIIVESRESIVESYRLGRGGFRVR 253 (753) Q Consensus 228 TGG~i~~~~~~i~~~y~tG~G~i~~r 253 (753) ++|+++ + ..=++..|.+-+.+| T Consensus 66 ~~Gi~l-a---~~lA~~l~~p~v~~R 87 (180) T 1zn8_A 66 SRGFLF-G---PSLAQELGLGCVLIR 87 (180) T ss_dssp TTHHHH-H---HHHHHHHTCEEEEEE T ss_pred CCCEEE-H---HHHHHHCCCCEEEEE T ss_conf 664360-1---688997299828999 No 59 >1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A Probab=22.01 E-value=27 Score=12.55 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=22.6 Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC Q ss_conf 1677788999999999872865320134432036778 Q gi|254780353|r 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226 (753) Q Consensus 190 ~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDF 226 (753) +.||||+.-=-.-+-+++-+|++ ..++..++..-|| T Consensus 15 r~pP~~~eAE~~vLG~lL~~p~~-~~~v~~~l~~edF 50 (119) T 1b79_A 15 KVPPHSIEAEQSVLGGLMLDNER-WDDVAERVVADDF 50 (119) T ss_dssp --CCCHHHHHHHHHHHHHHCGGG-HHHHHTTCCGGGS T ss_pred CCCCCCHHHHHHHHHHHHCCCCH-HHHHHHCCCHHHC T ss_conf 79999889999999999918518-9999960499871 No 60 >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Probab=21.53 E-value=28 Score=12.48 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=4.4 Q ss_pred CCCCCHHHHHHH Q ss_conf 722049999998 Q gi|254780353|r 352 PQVMPLDGILKE 363 (753) Q Consensus 352 P~~~~l~eil~~ 363 (753) |-=|-|+++|+. T Consensus 46 ~~~c~~~~~~~~ 57 (562) T 3ghg_A 46 PSGCRMKGLIDE 57 (562) T ss_dssp ECHHHHHHHHHH T ss_pred CCCHHHHHHHHH T ss_conf 861015678988 No 61 >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Probab=21.42 E-value=28 Score=12.47 Aligned_cols=10 Identities=10% Similarity=0.182 Sum_probs=3.6 Q ss_pred CCCCEEEEEC Q ss_conf 4781789806 Q gi|254780353|r 559 TTDRILLLST 568 (753) Q Consensus 559 t~d~LLffTs 568 (753) +++.+...-+ T Consensus 273 s~~~IyA~GD 282 (452) T 2cdu_A 273 SNRDIFAAGD 282 (452) T ss_dssp SSTTEEECST T ss_pred CCCCEEEECC T ss_conf 9999999337 No 62 >3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila str} PDB: 3fxe_A Probab=21.34 E-value=28 Score=12.46 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=29.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 5775778899887899998899997666789999887765442039788789999999999874177 Q gi|254780353|r 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 (753) Q Consensus 422 ~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd 488 (753) .||+.|++|||.- |.+-|+ .===+++.-+++|-+-|.++.+.|.. T Consensus 4 ~l~~eq~~aILka-------------------LdeaIe---~GPWe~SnFLRvIGKnL~eIRd~F~~ 48 (57) T 3fxd_A 4 QLSDEQKETILKA-------------------LNDAIE---KGPWDKSNFLRVIGKKLIAIRDRFLK 48 (57) T ss_dssp CCCHHHHHHHHHH-------------------HHHHHH---HSCTTSCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH-------------------HHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 4329999999999-------------------999998---29834888999998889999999999 No 63 >2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12} Probab=21.15 E-value=26 Score=12.71 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 8999999999872865320134432036778877601069889998985033415999 Q gi|254780353|r 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 (753) Q Consensus 196 l~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r 253 (753) +.++++.+...+.+.++ .+|-| .+++|+++ +-.=++..|.+-+.+| T Consensus 48 ~~~v~~~la~~~~~~~~------D~Iv~--~e~~Gi~l----a~~lA~~l~~p~v~~R 93 (190) T 2dy0_A 48 YALSIDLLVERYKNAGI------TKVVG--TEARGFLF----GAPVALGLGVGFVPVR 93 (190) T ss_dssp HHHHHHHHHHHHTTTTC------CEEEE--ETTHHHHH----HHHHHHHHTCEEEEEB T ss_pred HHHHHHHHHHHHCCCCC------CEEEE--CCCCCCHH----HHHHHHHCCCCEEEEE T ss_conf 99999999998406899------99997--35343120----6899997599869875 No 64 >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Probab=21.13 E-value=28 Score=12.43 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=28.2 Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEE-EEEEEECCCCCHHHHHHHH Q ss_conf 4079995242002168999999998640222134577640676605-8898504545889999987 Q gi|254780353|r 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESI 329 (753) Q Consensus 265 ~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~-~vi~~~~r~~~~~~vl~~L 329 (753) ...|.|..||+.++...+.+--.. -+.+.-+.=.+|..+...+ ..++.-....+++..++.| T Consensus 88 ~~~i~v~nl~~~~~~~~i~~~f~~---~G~i~~~~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l 150 (167) T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQ---YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167) T ss_dssp TCEEEEESCCTTCCHHHHHHHHGG---GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH T ss_pred CCEEEEECCCCCCCHHHHHHHHHH---CCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHH T ss_conf 867999477787999999999987---598242788404888985785699979999999999997 No 65 >1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.6.2.5 Probab=20.61 E-value=29 Score=12.35 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=34.4 Q ss_pred CEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCC---CCCCCCCCCCCCC Q ss_conf 803540536665427688747899999996100132166---1326788708867 Q gi|254780353|r 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY---PLISGQGNFGNID 122 (753) Q Consensus 71 ~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~maq~~~~~~---pli~g~GnfGs~~ 122 (753) ||.-||+|.- | +| -||..+....|++|..+.... |=..-.-|||-+. T Consensus 26 p~I~saNIAC---G-~H-AGD~~~m~~tv~lA~~~~V~IGAHPsypD~~gFGRr~ 75 (255) T 1v6t_A 26 KYITSANVAC---G-WH-AGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRY 75 (255) T ss_dssp TTCSEEEEEC---S-SS-SCCHHHHHHHHHHHHHTTCEEEEECCCSCTTTTTCSC T ss_pred HHHHHHHHHC---C-CC-CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC T ss_conf 6753588850---7-35-6779999999999998498782689977657999998 No 66 >3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Probab=20.40 E-value=29 Score=12.32 Aligned_cols=45 Identities=18% Similarity=0.359 Sum_probs=34.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 976667899998877654420397887899999999998741774 Q gi|254780353|r 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753) Q Consensus 445 ~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753) -.+.+|..+|+++-+.++.-|.++.+-++-+-.-+..+.+.+.+| T Consensus 10 YaLkDqV~eL~~e~krlkk~leeEqkARk~LE~~vrk~lk~~~d~ 54 (61) T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDP 54 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999999999888899999999999999999870678 No 67 >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus HB8} PDB: 2eq7_A* Probab=20.30 E-value=23 Score=13.10 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=5.9 Q ss_pred HCCCCCCCCCCCCC Q ss_conf 21661326788708 Q gi|254780353|r 106 VQRYPLISGQGNFG 119 (753) Q Consensus 106 ~~~~pli~g~GnfG 119 (753) ..+..||+.+..+| T Consensus 24 g~~V~liEk~~~~G 37 (455) T 2yqu_A 24 GMKVGVVEKEKALG 37 (455) T ss_dssp TCCEEEEESSSSSS T ss_pred CCCEEEEECCCCCC T ss_conf 89099996489966 No 68 >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Probab=20.10 E-value=30 Score=12.27 Aligned_cols=24 Identities=4% Similarity=0.278 Sum_probs=18.7 Q ss_pred CCEEEEEECCCCCCCHHHHHHHHH Q ss_conf 840799952420021689999999 Q gi|254780353|r 264 GSWCIVVTEIPYQVQKSRLIEKIA 287 (753) Q Consensus 264 ~~~~ivIteiPy~v~k~~~ie~I~ 287 (753) ..+.|.|.-|||.++...+.+-.. T Consensus 43 ~~~~v~V~nLp~~~t~~dl~~~F~ 66 (136) T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLS 66 (136) T ss_dssp TTCEEEEESCCTTCCHHHHHHHTT T ss_pred CCEEEEEECCCCCCCHHHHHHHHH T ss_conf 716999959897599999999974 Done!