PSIBLAST alignment of GI: 254780353 and protein with PDB id: 2rgr
>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna Length = 759
Score = 198 bits (504), Expect = 3e-48, Method: Composition-based stats.
Identities = 84/405 (20%), Positives = 159/405 (39%), Gaps = 37/405 (9%)
Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
T+++ +K + + + + + ++L+ R+IP++ DGFKP R++++ + L
Sbjct: 240 EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 298
Query: 68 FGAAFKKSARIVGEVIG--KLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
K A++ V H HG+QS+ +++ LAQ F L+ G FG
Sbjct: 299 SE---LKVAQLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRAT 354
Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
G AAA RY + ++ I D+ + +E+ EP + P +L NG
Sbjct: 355 GGKDAAAARYIYTELNKLTRKIFHPADDPLYKYI-QEDEKTVEPEWYLPILPMILVNGAE 413
Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
GI G +T IP N EI + L+++ E +E++ + G + E I
Sbjct: 414 GIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRG--------WTGTIEEIEP 463
Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK--IAELIIAKRIPLLE 299
+R+ R G + +TE+P + S + E + K P ++
Sbjct: 464 L------RYRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIK 513
Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--MGRVPQVMPL 357
D+ ++ D + + + + + L V G++ + +
Sbjct: 514 DMEEQHD-DNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 572
Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
+ IL E+ R E +R + + VE + I E
Sbjct: 573 NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIE 617