BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (753 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040030|gb|ACT56826.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 753/753 (100%), Positives = 753/753 (100%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA
Sbjct: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN
Sbjct: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT
Sbjct: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV
Sbjct: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED
Sbjct: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI
Sbjct: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR
Sbjct: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR
Sbjct: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL
Sbjct: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ
Sbjct: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH
Sbjct: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN
Sbjct: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS
Sbjct: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753


>gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159]
 gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159]
          Length = 836

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/771 (35%), Positives = 426/771 (55%), Gaps = 31/771 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +S         V+ +S+   ++  YL YA+S I +RA+PD+RDG KPV RRI++ 
Sbjct: 1   MDGGAMSEQQI---GRVRVISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL   A ++KSA IVGEV+   HPHGD +VYD+LVR+ QPF  RYPLI GQGNFG+
Sbjct: 58  MYEMGLRPNAKYRKSAGIVGEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTEAR+  +AE +L  +D+  VDF   Y++   EP V P++ PNLL NG 
Sbjct: 118 VDGDSAAAMRYTEARLAPIAEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGA 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +A + LIDNPE ++E+L+E + GPDFPTGGII+  RE I+
Sbjct: 178 SGIAVGMATNIPPHNLGEVVDALVYLIDNPEATVEELVERLPGPDFPTGGIIL-GREGIL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   VRAR  +EE GRG   I+VTE+PYQV K+ LIE+IAEL+ + R+  + D
Sbjct: 237 AAYATGRGRIVVRARAHIEETGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   ++    R   P  ++ ++F  + ++T F +NM  L  G +P+V+ L  +
Sbjct: 297 LRDESDRDGMRIVIELKRDAQPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRL 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVM 417
           L+ +L HR++V+ RR+ F ++  +RR  +L+GL IA  ++DE+   I   R+ +  +  +
Sbjct: 357 LQLYLEHRQQVIRRRTEFDLRQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF+LTE Q +AIL+++LR L  LE  +I+ E   LLA   ++ +LL    +    +  
Sbjct: 417 MARFNLTEIQANAILDMQLRRLAALERQKIEDEYRELLARIAELRALLADAAKILAVVRK 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+KE +        RRT   E   A      + ++ +  + V +++RG+++      
Sbjct: 477 ELLELKERYGDP-----RRTQIQE---ASSEISDEDLVPRVDVIVTLTSRGYVKRSTNGH 528

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE- 588
                     ++ +  ++ DS++  + A T D +L  +  G+ + LP   L     +   
Sbjct: 529 FRVQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPDVGRNARG 588

Query: 589 -AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I   ++L   +++ T      + +   L   + +G    V   E       G   + +
Sbjct: 589 LPIVNFLNLQPGEEVTTLLPVRDFSTATFLFFCTRQGRVKRVRLEEFSNVRASGLIAMSL 648

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + +++  V   +G D V +V  + + + F  D +  M R   GV      +G       
Sbjct: 649 DAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPMGRQAGGVIGVRLDEGDAVIAAE 708

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               EG   +  +   Y +  +        RGG G +  K  PR+G   ++
Sbjct: 709 VVRPEGDLLL-VSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPRTGHVAAA 758



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 6/170 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+    GD L        +D ++L++  G+A   P  ++           + + L+ 
Sbjct: 642 GLIAMSLDAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPMGRQA-GGVIGVRLDE 700

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEEKMKLVV 654
              ++ A V      LL+VS  G        E     R   G   +KV   +       V
Sbjct: 701 GDAVIAAEVVRPEGDLLLVSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPRTGHVAAATV 760

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
               D V +V    ++++  + QIP   R  +GV +   ++G     +  
Sbjct: 761 AREEDTVVLVSRRGRMILVPVAQIPRQGRHTQGVSVMRLQEGDEVASVAV 810


>gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
 gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
          Length = 839

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDSAG 716
              SR   GV+L    +D  +  +           E +T +D + 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
 gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
          Length = 839

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDSAG 716
              SR   GV+L    +D  +  +           E +T +D + 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
 gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
          Length = 839

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDSAG 716
              SR   GV+L    +D  +  +           E +T +D + 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
 gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
          Length = 829

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQV+ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQVLNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 7/154 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFKICEGLT 710
              SR   GV+L    +D  +  +          
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEE 810


>gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101]
 gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101]
          Length = 839

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 51/163 (31%), Gaps = 12/163 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDS 714
              SR   GV+L    +D  +  +           E +T +D 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDE 819


>gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
 gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
          Length = 763

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750


>gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124]
 gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
 gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124]
 gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
          Length = 839

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/753 (32%), Positives = 406/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT G I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAG-IIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEEN-GRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L     PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVD-NQPQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NID++I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     + K     + A+  KE
Sbjct: 479 DERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  L   T   +L  +T GK Y + A  +       +      ++ L  ++ I T 
Sbjct: 539 DDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
             +        L + +  G        +     + G   L +   +++       GD  +
Sbjct: 599 LSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             V ++   + F+   +  M R   GV+  S ++G ++  +   + E    +  +   Y 
Sbjct: 659 IFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAV-EDEKLLVVSENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RGG+G +  K   ++GK + +
Sbjct: 718 KRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+ ++ DG A      ++        +    I L      V   +     KLLVVS  G 
Sbjct: 658 IIFVTQDGNAIRFNETDVRPMGRTA-SGVKAISLREGDVAVCMDIAVEDEKLLVVSENGY 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                  E     R G   +     +K   +         D + ++      +  ++  I
Sbjct: 717 GKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDI 776

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFK-----ICEGLTWIDSAG 716
              SR   GV+L    +D  +  +           E +T +D + 
Sbjct: 777 SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 130b]
          Length = 863

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/785 (33%), Positives = 400/785 (50%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLV 420

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 421 KAMLEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 747 SGKFL 751
           +GK +
Sbjct: 781 NGKVV 785



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 15/248 (6%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +  + V          K   
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL           I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++ +             V  S   +L  +  G        E   + R G+  + +     
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--C 702
           + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +   
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKI 840

Query: 703 FKICEGLT 710
             + E L 
Sbjct: 841 VDLGEELE 848


>gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61]
 gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3]
 gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52]
 gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61]
 gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3]
 gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52]
          Length = 818

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/756 (33%), Positives = 416/756 (55%), Gaps = 29/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKS
Sbjct: 8   RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H 
Sbjct: 128 MSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I+VTE+PYQV K++LIE+IAEL+  K+I  + D+RDES      ++  
Sbjct: 247 AEIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++ +++  + ++T F +NM  L     P+V+ L   L+ +L H++ V+ RR
Sbjct: 307 VRRDANAKVVLNNLYKHTALQTSFGINMLALV-NGEPKVLNLKECLEHYLNHQKTVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           ++F ++  + R  IL+GL IA  ++DE+I +IR        +  +++RFSL+E Q  AIL
Sbjct: 366 TAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMARFSLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E  +L+    ++  +L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLEREKIEQEYQDLVRLIAELRGVLADEEKVLQIIRDELSEIKERFNDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT       A +    + +I +E + + ++++G+I+          K     +  +H
Sbjct: 483 --RRTEIVS--GAVEQFDDEDLIPQEHVVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMH 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             E D ++  L   T D +L  +  GK Y      +       +   I  L++L+ ++ I
Sbjct: 539 TAEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWI 598

Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    +     L+  + +G A     S        G   + +   +++  V    G
Sbjct: 599 NAMIPIESEFSDERYLVFATKQGIAKRSPLSAFAHIRNNGLIAIHLREGDELISVRLTDG 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             H+ +  +N  L+ F    +  M R   GV+  +  DG     +   + +    +    
Sbjct: 659 KKHLIIGTKNGMLIRFPETDVRAMGRSATGVKAITLDDGDEVVGMEI-LEDHHDVLVVTK 717

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +        +  RGG G        ++G  ++
Sbjct: 718 KGFGKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVA 753



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 14/215 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTD 561
               ++    E   V  + +G  +           +  L A+H +EGD L          
Sbjct: 601 MIPIESEFSDERYLVFATKQGIAKRSPLSAFAHIRNNGLIAIHLREGDELISVRLTDGKK 660

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +++ + +G     P  ++ +       +   I L+   ++V   + +    +LVV+ KG
Sbjct: 661 HLIIGTKNGMLIRFPETDVRAMGRSATGV-KAITLDDGDEVVGMEILEDHHDVLVVTKKG 719

Query: 622 NAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                  SE    +R GK      +   +   + +   V  + V V+     L+  ++  
Sbjct: 720 FGKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVAVTTVVGNEDVMVITTGGVLIRIAVSD 779

Query: 678 IPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
           I    R  +GV+L     +DG        K+ E  
Sbjct: 780 ISRTGRIAQGVKLIRLSGEDGHECVATVAKVPEEE 814


>gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
 gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
          Length = 863

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/785 (33%), Positives = 401/785 (51%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K++  +  +RDES +   
Sbjct: 242 IRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLV 420

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 421 KAMLEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F  +++  M R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPMGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPNGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 747 SGKFL 751
           +GK +
Sbjct: 781 NGKVV 785



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 83/249 (33%), Gaps = 17/249 (6%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +  + V          K   
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL        T  I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---- 644
           ++  I +  +Q + +  V D     +L  +  G        E   + R G+  + +    
Sbjct: 721 VRG-IRVEKDQAVKSLVVVDPNGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTE 779

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI-- 701
            + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +  
Sbjct: 780 RNGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQK 839

Query: 702 CFKICEGLT 710
              + E L 
Sbjct: 840 IVDLGEELE 848


>gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
 gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
          Length = 863

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/785 (33%), Positives = 400/785 (50%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLV 420

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 421 KAMLEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 747 SGKFL 751
           +GK +
Sbjct: 781 NGKVV 785



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 15/248 (6%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +  + V          K   
Sbjct: 601 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL           I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++ +             V  S   +L  +  G        E   + R G+  + +     
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--C 702
           + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +   
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKI 840

Query: 703 FKICEGLT 710
             + E L 
Sbjct: 841 VDLGEELE 848


>gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 868

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/787 (33%), Positives = 389/787 (49%), Gaps = 47/787 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T + + +  V+L   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G     
Sbjct: 2   TDLAKEIIPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++   ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+
Sbjct: 122 YTEARMSRLTHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALID PE+ ++ L++YI GPDFPT G I+     I  +YR GRG  
Sbjct: 182 IPPHNLTEVVNGLLALIDEPELDVDALMQYIPGPDFPTAG-IINGVGGIQLAYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+RA+  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 241 RIRAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R    ++++ +++  + +E+ F +NM  L     PQ++ L  IL+ +L HRRE
Sbjct: 301 RIYIEVKRGESAEVVLNNLYQQTQLESVFGINMVALVD-GRPQLVNLKQILEAFLRHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------- 422
           V+ RR+ F ++    R  +L+GL +A  NIDE+I +I+  D P+                
Sbjct: 360 VVTRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLV 419

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        LTE Q   IL +RL  L  LE+ ++  E   
Sbjct: 420 GALLAATGAEASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQ 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L   +     I  E+ E+K  F        R +          A     
Sbjct: 480 LLETIRALIEILEDPEVLLQVIRTELNELKAEFGDDRRSEIRASEEDLDILDLIAPEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                R+ K      SA   K+ D +      +T D +L  ++ GK +
Sbjct: 540 VTLSHAGYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLTFTSSGKVF 599

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            LP   L        G  I   I L   + +        Y     +   +  G       
Sbjct: 600 WLPVHQLPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYAEGFFVFFATRNGTVKKTPL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E      +GK  + +   + +  V    G   V +   N K + F   ++  M R   G
Sbjct: 660 TEFAFRLARGKIAINLDDGDNLVGVALTDGGRDVMLFASNGKAVRFDESEVRAMGRTATG 719

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR     +G     +     EG   + ++ R Y +           RG  G +  +   R
Sbjct: 720 VRGIRLAEGEEVVSLVVPDGEGD-ILTASERGYGKRTPLSEYPKKGRGTQGVIAIQTSER 778

Query: 747 SGKFLSS 753
           +G+ + +
Sbjct: 779 NGRLVGA 785



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L +++GKA       + +       ++  I L   +++V+  V D    +L  S +G 
Sbjct: 693 VMLFASNGKAVRFDESEVRAMGRTATGVRG-IRLAEGEEVVSLVVPDGEGDILTASERGY 751

Query: 623 AFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
                 SE     R   G   ++ S    ++   ++++  H V ++ +   L+     +I
Sbjct: 752 GKRTPLSEYPKKGRGTQGVIAIQTSERNGRLVGAIQLSEQHEVLLISDGGTLVRTRASEI 811

Query: 679 PEMSR-GKGVRLQSYKDGGISDVI 701
            ++ R  +GV L    +G     +
Sbjct: 812 SQVGRNTQGVTLIRLGEGESLQAV 835



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S  G     P           + +  +     N  +V A       ++L++S  G     
Sbjct: 747 SERGYGKRTPLSEYPKKGRGTQGVIAIQTSERNGRLVGAIQLSEQHEVLLISDGGTLVRT 806

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
             SEI    R   G T +++   E ++ V +V 
Sbjct: 807 RASEISQVGRNTQGVTLIRLGEGESLQAVERVD 839


>gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby]
 gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Corby]
 gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 863

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/785 (33%), Positives = 400/785 (50%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDENSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLV 420

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 421 KAMLEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 601 WLKAYQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 747 SGKFL 751
           +GK +
Sbjct: 781 NGKVV 785



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 13/237 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +  T  GR       ++  ++      + E +  + V          K   
Sbjct: 601 WLKAYQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL           I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++ +             V  S   +L  +  G        E   + R G+  + +     
Sbjct: 721 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGM 837


>gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 824

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/766 (32%), Positives = 418/766 (54%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MSENQHP---RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+
Sbjct: 58  MTADKPYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A LAL  NP++++  L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +  +++ +++  + M+T F +NM  L     P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVD-GQPKVLNLKECLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA   +DE+I +IR+       +  ++ +FS
Sbjct: 356 DHQKTVIRRRTAYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--AGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +H  E D ++  L   T D +L  +  GK Y      +       +   +  
Sbjct: 529 RGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTAKGIPLIN 588

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L+ ++ I T       +D    L   + +G A     S        G   + +   +
Sbjct: 589 LLELDKDEWINTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGD 648

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++       G  H+ V  +N  L+ F    +  M R   GV+  + +DG     +   + 
Sbjct: 649 ELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGVKAITLEDGDEVVGMEI-LE 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +      Y +        +  RGG G        ++G  ++
Sbjct: 708 DGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 6/167 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L  A     +  I++ + +G     P  ++ +       +   
Sbjct: 633 HIRNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGV-KA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L    ++V   + +  C +LVV+  G       SE    +R GK      +   +   
Sbjct: 692 ITLEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPI 751

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           + +      + + ++  +  L+  ++  I  M R  +GV+L    D 
Sbjct: 752 VAVKTVTGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDD 798


>gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
          Length = 824

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/766 (32%), Positives = 419/766 (54%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MSENQHP---RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+
Sbjct: 58  MTADKPYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A LAL  NP++++  L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +  +++ +++  + M+T F +NM  L     P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVD-GQPKVLNLKECLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       +  ++ +FS
Sbjct: 356 DHQKTVIRRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--AGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +H  E D ++  L   T D +L  +  GK Y      +       +   +  
Sbjct: 529 RGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTAKGIPLIN 588

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L+ ++ I T       +D    L   + +G A     S        G   + +   +
Sbjct: 589 LLELDKDEWINTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGD 648

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++       G  H+ V  +N  L+ F    +  M R   GV+  + +DG     +   + 
Sbjct: 649 ELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGVKAITLEDGDEVVGMEI-LE 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +      Y +        +  RGG G        ++G  ++
Sbjct: 708 DGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 6/167 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L  A     +  I++ + +G     P  ++ +       +   
Sbjct: 633 HIRNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGV-KA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L    ++V   + +  C +LVV+  G       SE    +R GK      +   +   
Sbjct: 692 ITLEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPI 751

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           + +      + + ++  +  L+  ++  I  M R  +GV+L    D 
Sbjct: 752 VAVKTVTGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDD 798


>gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
 gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
          Length = 822

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/755 (33%), Positives = 416/755 (55%), Gaps = 28/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKS
Sbjct: 8   RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H 
Sbjct: 128 MSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++  
Sbjct: 247 AEIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++ +++  + ++T F +NM  L     P+V+ L   L+ +L H++ V+ RR
Sbjct: 307 VRRDANAKVVLNNLYKYTALQTSFGINMLALV-NGEPKVLNLKECLEHYLNHQKTVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           ++F ++  + R  IL+GL IA  ++DE+I +IR        +  ++ RFSL+E Q  AIL
Sbjct: 366 TAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E  +++    ++ ++L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT       A +    + +I  E I + ++++G+I+          K     +  +H
Sbjct: 483 --RRTEIV--VGAVEQLDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMH 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             E D ++  L   T D +L  +  GK Y      +       +   I  L++L+ ++ I
Sbjct: 539 TSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWI 598

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D    L+  + +G A     S        G   + +   +++  V    G 
Sbjct: 599 NAMIPIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELISVRLTDGQ 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            H+ +  +N  L+ F    +  M R   GV+  +  D      +   + +    +    +
Sbjct: 659 KHLIIGTKNGMLIRFPETDVRTMGRSATGVKAITLDDNDEVVSMEI-LEDHHDVLVVTKK 717

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        +  RGG G        R+G  ++
Sbjct: 718 GFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L           +++ + +G     P  ++ +       +   
Sbjct: 632 HIRNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTMGRSATGV-KA 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+ N ++V+  + +    +LVV+ KG       SE    +R GK      +   +   
Sbjct: 691 ITLDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSV 750

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           + +   V  + + V+  +  L+  S+  I    R  +GV+L         + + 
Sbjct: 751 VAVTTVVGNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVA 804


>gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
 gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
          Length = 822

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/755 (33%), Positives = 416/755 (55%), Gaps = 28/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKS
Sbjct: 8   RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H 
Sbjct: 128 MSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++  
Sbjct: 247 AEIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++ +++  + ++T F +NM  L     P+V+ L   L+ +L H++ V+ RR
Sbjct: 307 VRRDANAKVVLNNLYKYTALQTSFGINMLALV-NGEPKVLNLKECLEHYLNHQKTVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           ++F ++  + R  IL+GL IA  ++DE+I +IR        +  ++ RFSL+E Q  AIL
Sbjct: 366 TAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E  +++    ++ ++L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT       A +    + +I  E I + ++++G+I+          K     +  +H
Sbjct: 483 --RRTEIV--VGAVEQLDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMH 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
             E D ++  L   T D +L  +  GK Y      +       +   I  L++L+ ++ I
Sbjct: 539 TSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWI 598

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D    L+  + +G A     S        G   + +   +++  V    G 
Sbjct: 599 NAMIPIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELISVRLTDGQ 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            H+ +  +N  L+ F    +  M R   GV+  +  D      +   + +    +    +
Sbjct: 659 KHLIIGTKNGMLIRFPETDVRTMGRSATGVKAITLDDNDEVVSMEI-LEDHHDVLVVTKK 717

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        +  RGG G        R+G  ++
Sbjct: 718 GFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L           +++ + +G     P  ++ +       +   
Sbjct: 632 HIRNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTMGRSATGV-KA 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+ N ++V+  + +    +LVV+ KG       SE    +R GK      +   +   
Sbjct: 691 ITLDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSV 750

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           + +   V  + + V+  +  L+  S+  I    R  +GV+L         + + 
Sbjct: 751 VAVTTVVGNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVA 804


>gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 871

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/785 (33%), Positives = 399/785 (50%), Gaps = 47/785 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   
Sbjct: 11  YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELSNDWNKP 70

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RY
Sbjct: 71  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRY 130

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 131 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNI 190

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D P+ S+E L+E I GPDFPT   I+  R  I+E YR G+G   
Sbjct: 191 PPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAA-IINGRAGIIEGYRTGKGRVV 249

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +   
Sbjct: 250 IRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGM 309

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ ++F  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 310 RVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 368

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 369 VVTRRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLV 428

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+E Q  AIL LRL  L  LE+ +I +E + 
Sbjct: 429 KAMLEKAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQDKIINEFEE 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 489 LLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVV 548

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA H K+ D ++  + A T D +L  S  GK Y
Sbjct: 549 VTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLY 608

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L A  L        G  I  ++ L   ++I        Y     + + + KG    V  
Sbjct: 609 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 668

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M R  +G
Sbjct: 669 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 728

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    +       +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 729 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 788

Query: 747 SGKFL 751
           +GK +
Sbjct: 789 NGKVV 793



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 15/248 (6%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +  + V          K   
Sbjct: 609 WLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPL 668

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+  +E DSL           I+L +  GK        +         
Sbjct: 669 NAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARG 728

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++ +             V  S   +L  +  G        E   + R G+  + +     
Sbjct: 729 VRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 788

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--C 702
           + + ++ +     D   ++ +   L+ F ++++  + R  +GVRL +   G     +   
Sbjct: 789 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKI 848

Query: 703 FKICEGLT 710
             + E L 
Sbjct: 849 VDLGEELE 856


>gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR]
 gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR]
          Length = 814

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/757 (33%), Positives = 402/757 (53%), Gaps = 13/757 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N        +  +++   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MKNLTEFEHGKILPININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSAR+VGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ G GNFG+IDGDS
Sbjct: 61  MTPDKPHKKSARLVGEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM ++ + +L  +D+D VDF   +++   EPVV P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMAKITQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI +  + LIDNP+ + ++L+  + GPDFPTGG I+  RE I  +Y+ 
Sbjct: 181 GMATNIPPHNLGEIIDGVIMLIDNPDATPQELMMAVKGPDFPTGG-IIMGREGIKSAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RA+  +E +  G   I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 240 GRGAIRIRAKTTIETMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P +++  +F  + ++  F + M  L     P+V+ L   L  +L
Sbjct: 300 DRMGMQIVIELRKDANPQVVLNQLFKHTQLQETFGVIMLALVD-GQPKVLNLRDALFYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+++V+ RR+ F +   + R  IL+GL IA  ++DE+I  IR        +  ++ +F 
Sbjct: 359 EHQKDVITRRTRFELDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDKFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +++ E  NLL     + ++L +       I  E+  +
Sbjct: 419 LSEKQAQAILDMRLQKLTGLEREKLEEEYKNLLERIAYLKAVLANEHMVLGIIKEELLVI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE ++               +    A     +       +        R+ K     ++A
Sbjct: 479 KEKYNDPRRTEISINDVNIDTEDLIAEEDMVITITHLGYIKRIALDTYRNQKRGGRGVTA 538

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  KE D ++      T   +L  +  GK Y L   N+       +  AI  L+ ++ ++
Sbjct: 539 MGTKEEDFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEAGRQAKGTAIVNLLYISGDE 598

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +D+   LL ++ KG        E  +  + G   L +   +++  V    
Sbjct: 599 KITAVIPVRSFDTEEYLLTITRKGVIKKTPLVEYGSTRKDGIIALSLDENDELIDVKLTN 658

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G + V +  +  K + F+ +++  M R  +GVR  S  +     +    I +G   +   
Sbjct: 659 GKNEVIIGTKEGKAIRFAEEEVRSMGRAARGVRGISLSEKDEV-IGIDTIEQGADVLVVT 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + +  +        RGG G +  +   R+G  + 
Sbjct: 718 EKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRNGHLVG 754



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKM 650
           I L+   +++     +    +LVV+ KG        +     R GK  + +        +
Sbjct: 693 ISLSEKDEVIGIDTIEQGADVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRNGHL 752

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             +  V  GD + ++     ++   +D I  M R  +GVRL    +  
Sbjct: 753 VGIKVVKPGDELMLITAEGIIIRLDVDGISTMGRSTQGVRLMRLDEND 800


>gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 820

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/766 (33%), Positives = 409/766 (53%), Gaps = 37/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ ++     +  V +   L   +L YA+S I  RAIPD+RDG KPVHRRI++AM E G
Sbjct: 1   MADESS--SRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKS+RIVG+V+GK HPHGD +VY++LVRLAQ F  RYPLI G GNFG+IDGD+
Sbjct: 59  MTPDKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDA 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM+ +A  +L+ ++++ VDF   Y+E++ EPVV PS+FPNLL NG+SGIAV
Sbjct: 119 AAAMRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+ +  + LID+P+ +++ L+  I GPDFPTGG+I+  RE I ++Y  
Sbjct: 179 GMATNIPPHNLREVIDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA    EE+  G   IVVTEIPYQ  K+R++EKIAEL   K+I  + D+RDES
Sbjct: 238 GRGSITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R + P +++ ++F  + ++T F +    L     P+V+ L   L+ +L
Sbjct: 298 DRRGMRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALV-NGEPKVLTLRETLEHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            H+R+V+ RR+ + +   + R  IL+GL IA  ++DE+I++IR+            S F 
Sbjct: 357 NHQRDVVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E   L     ++ ++L   K     I  EI E+
Sbjct: 417 LSEEQAQAILDMRLQRLTGLEREKIEAEYQELQQRIAELKAILADPKLLDGVIRQEILEI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F        RRT       A+    ++ +I    + + I++RG+I+          +
Sbjct: 477 KERFGDE-----RRTRIV---NAEGEISEEDLIPVHDVVIAITHRGYIKRLPLSTYHSQR 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                ++ ++  E D +       T D +L  +  G+ Y + A ++     +  G  I  
Sbjct: 529 RGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVPEFGRQARGTPIVN 588

Query: 593 LIDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           L+++   + +       S          L   + +G       +E     + G   + + 
Sbjct: 589 LLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYSNVRKNGLIAINLR 648

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
            ++ +  V    G   + +V  N   + F    +  M R   GV+  S  +G   +VI  
Sbjct: 649 DDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPMGRAATGVKGISLSEGD--EVIAM 706

Query: 704 KICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            + E     +    R Y +           RGG G       P++G
Sbjct: 707 DVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNG 752



 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 63/153 (41%), Gaps = 6/153 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I++++ +G A   P  ++         +   I L+   +++   V +    +LVV+S+G 
Sbjct: 665 IMMVTRNGLAIRFPETDVRPMGRAATGV-KGISLSEGDEVIAMDVAEDDHDVLVVTSRGY 723

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 SE  A +R GK    +     +   +++ +    D V +V +    +   +  +
Sbjct: 724 GKRTPVSEYRAQSRGGKGIKTLNCTPKNGHAIEMCMVTEDDDVMIVTQAGVAIRIHVRDV 783

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             +SR  +GVRL +  +G     +   + +   
Sbjct: 784 STLSRNTQGVRLINVDEGVEVASVSRVVKDDDE 816


>gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 820

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/766 (34%), Positives = 411/766 (53%), Gaps = 37/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ ++     +  V +   L   +L YA+S I  RAIPD+RDG KPVHRRI++AM E G
Sbjct: 1   MADESS--SRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKS+RIVG+V+GK HPHGD +VY++LVRLAQ F  RYPLI G GNFG+IDGD+
Sbjct: 59  MTPDKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDA 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM+ +A  +L+ ++++ VDF   Y+E++ EPVV PS+FPNLL NG+SGIAV
Sbjct: 119 AAAMRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+ +  + LIDNP+ +++ L+  I GPDFPTGG+I+  RE I ++Y  
Sbjct: 179 GMATNIPPHNLREVIDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA    EE+  G   IVVTEIPYQ  K+R++EKIAEL   K+I  + D+RDES
Sbjct: 238 GRGSITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R + P +++ ++F  + ++T F +    L     P+V+ L   L+ +L
Sbjct: 298 DRRGMRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALV-NGEPKVLTLRETLEHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            H+R+V+ RR+ + +   + R  IL+GL IA  ++DE+I++IR+            S F 
Sbjct: 357 NHQRDVVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I++E   L+    ++ ++L   K   + I  EI E+
Sbjct: 417 LSEEQAQAILDMRLQRLTGLEREKIEAEYQELIQRIAELKAILADPKLLDSVIRQEILEI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F        RRT       A+    ++ +I    + + I++RG+I+          +
Sbjct: 477 KERFGD-----DRRTRIV---NAEGEISEEDLIPVHDVVIAITHRGYIKRLPLSTYHSQR 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                ++ ++  E D +       T D +L  +  G+ Y + A ++     +  G  I  
Sbjct: 529 RGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVPEFGRQARGTPIVN 588

Query: 593 LIDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           L+++   + +       S          L   + +G       +E     + G   + + 
Sbjct: 589 LLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYSNVRKNGLIAINLR 648

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
            ++ +  V    G   + +V  N   + F    +  M R   GV+  S  +G   +VI  
Sbjct: 649 DDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPMGRAATGVKGISLSEGD--EVIAM 706

Query: 704 KICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            + E     +    R Y +           RGG G       P++G
Sbjct: 707 DVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNG 752



 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 6/153 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I++++ +G A   P  ++         +   I L+   +++   V +    +LVV+S+G 
Sbjct: 665 IMMVTRNGLAIRFPETDVRPMGRAATGV-KGISLSEGDEVIAMDVAEDDHDVLVVTSRGY 723

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 SE  A +R GK    +     +   +++ +    D + +V +    +   +  +
Sbjct: 724 GKRTPVSEYRAQSRGGKGIKTLNCTPKNGHAIEMCMVTPEDDIMIVTQAGVAIRIHVRDV 783

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             +SR  +GVRL +  +G     +   + +   
Sbjct: 784 STLSRNTQGVRLINVDEGVEVASVSRVVKDDDE 816


>gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 812

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/747 (33%), Positives = 395/747 (52%), Gaps = 13/747 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +G+      +KS
Sbjct: 6   KVLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+GK HPHGD +VYD++VR+AQ F  RYPLI G GNFG++DGDSAAA RYTEAR
Sbjct: 66  AHIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ VDF   Y+    EPVV PS+ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 126 MAKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +  + +ID+PE+ I +L++ I GPDFPTGG I   R+ I ++Y  GRG  +VRA 
Sbjct: 186 LREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKI-MGRQGIRQAYTTGRGTIKVRAV 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E++  G   I+VTE+PYQV K++LIEKIAEL+  K+I  + D+RDES      ++  
Sbjct: 245 TTFEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P +++  +F  + ++  F + M  L     P+++ L  IL  +L H+++V+ RR
Sbjct: 305 LKRDANPQVVLNQLFKHTQLQDTFGIIMLALVD-NQPRILNLKEILFYYLEHQKDVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + + +   + R  IL+GL IA  N+DE+I IIR        +  ++SRF LTE Q  AIL
Sbjct: 364 TRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFGLTEKQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  E   L+ + E  +S+L   +     I  E+ E+KE +  +   
Sbjct: 424 DMRLQRLTALEREKIDEEYRELIKKIEYFNSILADERVLLGVIRQELLEIKEKYGDARRT 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                          A     +       +        ++ +     ++A+  KE D ++
Sbjct: 484 QITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVDTYKNQRRGGRGVTAMATKEEDFVR 543

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFV--- 607
                 T + +L  +  GK Y L    +       +   I  L+ ++ ++ I        
Sbjct: 544 HLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKGTPIVNLLYVDQDERITAIIPVKE 603

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     L +V+  G       SE  ++ R G   L +   +K+  V   TG + V +  +
Sbjct: 604 FTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIALSLEEGDKLIDVKLSTGQEEVIIGTK 663

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + FS   +  M R  +GV+  +   G    +    + E    +    + + +    
Sbjct: 664 KGMAIRFSETDVRPMGRTARGVKGITLSPGDEV-IGLEVVDEQAELLTVTSKGFGKKTPF 722

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  RGG G +  K   ++G+ + 
Sbjct: 723 SEYRVQGRGGKGIINMKVTQKNGEVVG 749



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L+   +++   V D   +LL V+SKG       SE     R GK  + +     + E 
Sbjct: 688 ITLSPGDEVIGLEVVDEQAELLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNGEV 747

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVICFKICE 707
           + +V     D V  +     ++     +I    R  +GV L    KD  ++ V      E
Sbjct: 748 VGIVAVRPEDEVMAISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQE 807

Query: 708 GLT 710
              
Sbjct: 808 DEE 810



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 10/182 (5%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
             D  RR              +   +   +   ++ + +G         V         +
Sbjct: 626 EYDSSRRDGIIALSLEEGDKLIDVKLSTGQEEVIIGTKKGMAIRFSETDVRPMGRTARGV 685

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             +    GD +           +L +++ G     P          G+ I  +     N 
Sbjct: 686 KGITLSPGDEVIGLEVVDEQAELLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNG 745

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
           ++V         +++ +S +G    V+ +EI    R   G T +K++ ++++  V K+  
Sbjct: 746 EVVGIVAVRPEDEVMAISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAA 805

Query: 659 DH 660
             
Sbjct: 806 QE 807


>gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925]
 gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925]
          Length = 849

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/759 (32%), Positives = 407/759 (53%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            + N+  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     +
Sbjct: 3   NQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +
Sbjct: 183 PHNLTEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIV-GKSGIRKAYETGRGKVIL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +EE   G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  +   +
Sbjct: 242 RSKAEIEEEK-GRSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRI 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++  + M+  F + M  L     P+V+ L  +LK ++  + EV+
Sbjct: 301 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALV-NGEPKVLSLKEVLKHYIKFQEEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR      + +  ++SRF L+E Q  
Sbjct: 360 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSRFGLSEKQAT 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +   
Sbjct: 420 AILDMKLQRLTGLEREKIEEEYAKLMENIKYFRQILSDKSLLLKIIKDELNEIKVKYGDE 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RR+   +          + +IE++ + + +++ G+I+          K     + 
Sbjct: 480 -----RRSEIIQ--GEGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHN 599
           A+  KE D ++  + A T D IL  +  G+ Y L A  +       + +    LI L+  
Sbjct: 533 AMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKE 592

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +     L++ + KG        +  +  + G   + +  ++++      
Sbjct: 593 EKIQNVIYLKEFKKDKFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDELVSARVT 652

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           TGD ++    +N   + F  + +  M R   GV+  + ++      +     E   ++  
Sbjct: 653 TGDCNIIYATKNGYAIRFHENDVRPMGRTATGVKAITLREDDEVVSMEVA-SENRDFLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +        L KRGG G +  K   ++G  + +
Sbjct: 712 SENGYGKRTPIDQYTLQKRGGKGVITYKISEKTGLLIGA 750


>gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
 gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
          Length = 842

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 408/759 (53%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            + N+  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     +
Sbjct: 3   NQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+       IDNPEIS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +
Sbjct: 183 PHNLTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIV-GKSGIRKAYETGRGKVIL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R  +EE   G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  +   +
Sbjct: 242 RSRAEIEEDK-GKSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRI 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++  + M+  F + M  L     P+V+ L  +L+ ++  + EV+
Sbjct: 301 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALV-NGEPKVLSLKEVLRHYIKFQEEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  ++S+F L+E Q  
Sbjct: 360 TRRTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSKFGLSEKQAT 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +   
Sbjct: 420 AILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQILSDKSLLLKIIKDELNEIKTKYGDE 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                R++   +          + +IE++ + + +++ G+I+          K     + 
Sbjct: 480 -----RKSEIIQ--DEGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHN 599
           A+  KE D ++  + A T D IL  +  G+ Y L A  +       + +    LI L+  
Sbjct: 533 AMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKE 592

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +     L++ + KG        +  +  + G   + +  ++++  V   
Sbjct: 593 EKIQNVIYLKEFKEDTFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDELISVRVT 652

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           TGD +V    +N   + F  + +  M R   GV+  + ++      +     E    +  
Sbjct: 653 TGDCNVIYATKNGYAIRFDENDVRPMGRTATGVKAITLREDDEVVSMEVA-SENRDLLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +  +     L +RGG G +  K   ++G  + +
Sbjct: 712 SENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGLLIGA 750



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 7/175 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L+A++ +E D L           ++  + +G A      ++         +   I L  
Sbjct: 634 GLNAINLREDDELISVRVTTGDCNVIYATKNGYAIRFDENDVRPMGRTATGV-KAITLRE 692

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
           + ++V+  V      LLVVS  G        +     R GK  +     EK   +     
Sbjct: 693 DDEVVSMEVASENRDLLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGLLIGARF 752

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICE 707
           V   D + ++ ++   +  ++  I   SR   GV L     +  +  +    I E
Sbjct: 753 VEDKDELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISE 807


>gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70]
 gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70]
          Length = 825

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/766 (33%), Positives = 418/766 (54%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MSENQNP---RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSA IVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+
Sbjct: 58  MTADKPYKKSAHIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A LAL  NP++++  L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKVEIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  +  +++ +++  + ++T F +NM  L     P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRRDANSKVILNNLYKHTALQTNFGINMLALVD-GQPKVLNLKECLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       +  ++ +FS
Sbjct: 356 DHQKTVIRRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSERQAQAILDMRLQRLTGLEREKIEQEYQDLIRLIAELKAILADEEKVLQIIRDELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT         +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--IGGIEEFDDEDLIPRENIVITLTHKGYIKRLPVSTYKSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQL 592
                +  +H  E D ++  L   T D +L  +  GK Y      +        G  I  
Sbjct: 529 RGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTARGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L+ ++ I T       +D    L   + +G A     S        G   + +   +
Sbjct: 589 LLELDKDEWINTIIPINNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGD 648

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  V    G  H+ V  +N  L+ F    +  M R   GV+  + +DG     +   + 
Sbjct: 649 ELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTMGRSATGVKAITLEDGDEVVGMEI-LE 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    +      Y +        +  RGG G        ++G  ++
Sbjct: 708 DDCDVLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKNGSVVA 753



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 8/170 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H +EGD L        +  I++ + +G     P  ++ +       +   
Sbjct: 633 HIRNNGLIAIHLREGDELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTMGRSATGV-KA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L    ++V   + +  C +LVV+  G       SE    +R GK      +   +   
Sbjct: 692 ITLEDGDEVVGMEILEDDCDVLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKNG-S 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           +  V  VTG+  + ++     L+  ++  I  M R  +GV+L    D   
Sbjct: 751 VVAVKTVTGEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRLSDDDE 800


>gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
 gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B]
 gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
          Length = 837

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 402/758 (53%), Gaps = 18/758 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N+    E     V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G
Sbjct: 1   MNNN----EGKTLPVDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      +K ARIVG+V+GK HPHGD SVYD+LVRLAQ F  RY L+ G GNFG++DGD 
Sbjct: 57  ITPDKPHRKCARIVGDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM ++A  +++ ++++ VDF   Y+ ++ EP V PS+FPNLL NG+SGIAV
Sbjct: 117 AAAMRYTEARMDKMANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +    LI+NPE ++  L+  I GPDFPT G I+  +  I E+Y  
Sbjct: 177 GMATNIPPHNLTEVIDGVNLLIENPEATVLDLMTKIKGPDFPTAG-IIMGKSGIREAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   +EE G G   I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 236 GRGKVVVRANATIEEDG-GRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R  +P++++  ++  + ++  F + M  L     P+V+ L  +L  +L
Sbjct: 295 DRDGMRIVIELKRDANPNVILNQLYKHTKLQDSFGIIMLALVD-NQPKVLNLKEVLVHYL 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             ++EV+ RR+ F ++  + R  IL+GL IA  NIDE+I+IIR+    ++ K  +  RF+
Sbjct: 354 NFQKEVITRRTQFELEKAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQERFA 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+ +RLRSL  LE  +I+ EL  L+A   K+  +L +     N I  E+ E+
Sbjct: 414 LSEKQSTAIVEMRLRSLTGLERQKIEDELSELMALINKLKEILANEALILNIIRDELNEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  F          +             +  +       +         + K     + A
Sbjct: 474 KGRFGDERRTAIEASQNDINIEDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQ 600
              KE D ++      T D IL  S  G+ YTL    +       +      L+ L   +
Sbjct: 534 ATTKEDDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEAGRTAKGTNVINLLLLRPEE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        ++ +  L+  + KG        +     + G   + +  ++++  V   +
Sbjct: 594 KIQAVITLSEFEKSQYLVFGTKKGIIKKTTLEDFSNIRKNGLNAVGLREDDELISVRLSS 653

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G D + +V +N   + F  + +  M R   GV+  S +D      +   + E +  +  +
Sbjct: 654 GEDQIIMVTQNGYSIRFKEEDVRPMGRTATGVKGISLRDEDNVVSMEI-VDESMDILVVS 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           RGG+G +  K   ++GK +++
Sbjct: 713 ENGYGKRTPIGEYKCQNRGGMGIITYKVSEKTGKVVAA 750



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 6/156 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D+I++++ +G +      ++         +   I L    ++V+  + D +  +LVVS  
Sbjct: 656 DQIIMVTQNGYSIRFKEEDVRPMGRTATGV-KGISLRDEDNVVSMEIVDESMDILVVSEN 714

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           G        E     R G   +     E   K+     V  +H + ++     ++  +  
Sbjct: 715 GYGKRTPIGEYKCQNRGGMGIITYKVSEKTGKVVAATMVNDEHEIMIINSADIVIRINSK 774

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           +I    R   GV L    D      I   I +    
Sbjct: 775 EISTTGRSAMGVTLMRNNDETKVLAIAKVISDDEEI 810


>gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
 gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
          Length = 875

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/792 (33%), Positives = 396/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I+N +I+IE+L+ +I GPDFPT  +I   R+ I ++YR 
Sbjct: 177 GMATNIPPHNLTEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAMIN-GRKGIEDAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES
Sbjct: 236 GRGKIYLRSKADIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVAEVILNNLYAQTQLQTSFGINMVALD-NNQPRLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------- 411
            HRREV+ RR+ F ++    R  IL+GL IA  NIDEII +IRN                
Sbjct: 355 NHRREVVTRRTIFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGW 414

Query: 412 -----------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      V   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGTVAVMLEATGVDAARPEWLEDEFGVRDGKYYLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL    ++  +L+S ++    I  E+  V++ F           +          
Sbjct: 475 DEYKELLTLIGELMFILSSPERLMEVIREELEAVRDGFGDERRTEITAASADIDIEDLIN 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 QEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  L+ L  ++ I        Y+    + + +S G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNLLPLEQDERITAILPVKEYEDDKFVFMATSDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +   + +  V    GD  V +  ++ K++ F   Q+  M 
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLREGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +G     +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGIKLAEGDKVVSLIVPHNEGD-VLTVTENGYGKRTELCEYPAKSRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGCVVGA 785



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 103/338 (30%), Gaps = 21/338 (6%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
              E     ++         +   + +++   +   +      + + +       S T  
Sbjct: 512 FGDERRTEITAASADIDIEDLINQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATRM 571

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           + +  +   L  +    +  +       +   +     L S   +   I   +       
Sbjct: 572 KEEDFIERLL--VANTHDTILCFSTRGRMYWLKVYQLPLASRTARGKPIVNLL------- 622

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               +   R T    V        +   +     TV  +        +  S  + A++ +
Sbjct: 623 --PLEQDERITAILPVKE--YEDDKFVFMATSDGTVKKTPLTDFSRPR--SAGIIAVNLR 676

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGDSL         + ++L S  GK        + +      A    I L     +V+  
Sbjct: 677 EGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAMGRTA-AGVRGIKLAEGDKVVSLI 735

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVA 662
           V  +   +L V+  G     E  E  A +R   G   +KVS      +  V   TG    
Sbjct: 736 VPHNEGDVLTVTENGYGKRTELCEYPAKSRATQGVVSIKVSERNGCVVGAVQVDTGYEFM 795

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           ++     L+   + ++ ++ R  +GVRL    +G    
Sbjct: 796 MITNGGTLVRTRVAEVSQVGRNTQGVRLIRTSEGERVV 833


>gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052]
 gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 828

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/753 (33%), Positives = 405/753 (53%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  V  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++ E+GL    
Sbjct: 2   DFNEGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  + LIDNPE ++ +L+  I GPDFPTG   +  +  I  +Y  G+G  
Sbjct: 182 IPPHNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGA-TIMGKAGIRAAYETGKGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA   +EE   G   I+VTEIPYQV K++L+E IA+L+  K+I  + D+RDES  D  
Sbjct: 241 IVRANAEIEEEN-GRHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P +++  ++  + ++  F + M  L     P+V+ L  IL+ ++  ++E
Sbjct: 300 RIVIELKRDANPSVVLNLLYKHTKLQDTFGIIMLALV-NNEPKVLNLKQILENYVEFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +   + R  IL+GL IA  NIDE+I+IIRN +     K  ++ RF L+E Q
Sbjct: 359 VITRRTIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMERFELSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I+ E + L+ + E + S+L S ++  + I  E+ E+K  +S
Sbjct: 419 SQAILEMRLRRLTGLERGKIEEEYNELMKQIEYLKSILASEEKLLDVIKEELLEIKNRYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +                 +       +   +     S +     + A+  KE
Sbjct: 479 DERKSKIEKIVNEIDIEDLIQEEDVVITLTHSGYIKRISADTYSSQRRGGKGIQAMSTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++  +   T   +L  +  G+ Y L A  +       +      LI +  ++ I T 
Sbjct: 539 DDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGRQAKGTNLINLIAIEPDEKIQTV 598

Query: 606 FVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                  K   L + + +G       SE     + G   + +   +++  V    GD ++
Sbjct: 599 LTVTDEKKEGFLFMGTKQGIVKKTPLSEFKNLRKNGLIAISLKDGDELLKVKNTYGDANI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            VV +N   + F+   +  M R   GV+  + K+  I+  +   + +G   +  +   Y 
Sbjct: 659 MVVTQNGYAVKFNERDVRSMGRTASGVKAINLKEDDIAVCMDIAV-DGEELLVISENGYG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +        L  RGGVG +  K   ++GK   +
Sbjct: 718 KRTPIAEYKLQNRGGVGLITYKISEKTGKLAGA 750



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A+  K+GD L    + +    I++++ +G A      ++ S      +    I+L  
Sbjct: 634 GLIAISLKDGDELLKVKNTYGDANIMVVTQNGYAVKFNERDVRSMGRTA-SGVKAINLKE 692

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
           +   V   +     +LLV+S  G       +E     R G   +     EK   +     
Sbjct: 693 DDIAVCMDIAVDGEELLVISENGYGKRTPIAEYKLQNRGGVGLITYKISEKTGKLAGATI 752

Query: 656 VT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               D + ++  +   +  ++  I   SR   GV L    +      I 
Sbjct: 753 CKVDDELMLINSSGVAIRINVADISVTSRSAMGVTLMRTNEDEKVVAIA 801


>gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
 gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
          Length = 814

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 385/762 (50%), Gaps = 13/762 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +            +  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAKEGGKYLALETSGKIMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E GL     +KKSA +VG V+ + HPHGD +VY+++VRLAQ F  RYPLI G GNFG+
Sbjct: 61  MYEEGLTPDKPYKKSAVVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDS AA RYTEAR++++A  +L  +D+D VDF D Y+    EPVV P++ P LL NG+
Sbjct: 121 VDGDSPAAMRYTEARLSKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E+ +A + LID P+  ++++ + I GPDFPT G ++  RE I 
Sbjct: 181 AGIAVGMATNIPPHNLGEVIDALVLLIDKPDADLKEITKIIKGPDFPTAG-LIIGREGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +YR GRG  +VRA+  VE +  G   IVVTEIPYQV K+RL++ I +L+  K+I  + D
Sbjct: 240 NAYRTGRGSIKVRAKAQVETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES      ++    R + P +++  ++  + M+  F + M  L     P+V+ L  +
Sbjct: 300 LRDESDRTGMRIVIELRRDVQPKVILNQLYKHTQMQENFGVIMLALVD-GRPRVLNLREM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VM 417
           L  +L H++EV+ RR+ + +   + R  I+ GL IA   +DE+I IIR           +
Sbjct: 359 LTLYLDHQKEVITRRTRYLLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L++ Q  AI+++RL  L  LE  +++ E   L         +L S  + +  +  
Sbjct: 419 MERFQLSDKQAKAIVDMRLGRLTALEREKLEEEWQELQKRIAYYQEVLASEARVYAIVRD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K  F+                    A     +       +        RS K   
Sbjct: 479 ELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVVTLTHRGYIKRQPVDTYRSQKRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
             + A+  +E D ++      T   +L  +  G+ + L    +     +  G  +  L+ 
Sbjct: 539 RGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAGRQARGTPLVNLLY 598

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           LN  + I         +    LL+ + KG        E   + R G   + +  ++ +  
Sbjct: 599 LNKGETITAVIPIRELEEDSYLLMATRKGIVKKTSLGEYHTSRRDGLLAINLDEDDDLVG 658

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V++  G + V +V    K + F  D++  M R  +GVR  +  D  +  V   K+ E   
Sbjct: 659 VLRTEGNNEVMLVTRRGKAIRFGEDEVRPMGRAARGVRGIALDDDDMV-VGLVKVREDAE 717

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + R + +           RGG G +      R+G   +
Sbjct: 718 LVVVSERGFGKRTTLEEYRPQGRGGKGIITMNVTDRTGPVAA 759



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++          S    L A++  E D L   L     + ++L++  GKA       +  
Sbjct: 628 IVKKTSLGEYHTSRRDGLLAINLDEDDDLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRP 687

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++  I L+ +  +V         +L+VVS +G        E     R GK  +
Sbjct: 688 MGRAARGVRG-IALDDDDMVVGLVKVREDAELVVVSERGFGKRTTLEEYRPQGRGGKGII 746

Query: 643 KVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            ++  ++   V  V      D + ++     L+   ++ I    R  +GV L   +    
Sbjct: 747 TMNVTDRTGPVAAVAVVKLEDELMLISAEGILIRLGVEDISRQGRNTQGVTLMRLEPSDR 806

Query: 698 SDVIC 702
              + 
Sbjct: 807 VVAMA 811


>gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT]
 gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 843

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/759 (33%), Positives = 406/759 (53%), Gaps = 28/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     +
Sbjct: 3   NEGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I  +Y  GRG   +
Sbjct: 183 PHNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKRAYETGRGKVVI 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES      +
Sbjct: 242 RSKAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++  + M+  F + M  L     P+V+ L  +LK ++  + EV+
Sbjct: 302 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALV-NGEPRVLSLKEVLKHYIKFQEEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR+     + +  ++S+F+L+E Q +
Sbjct: 361 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSKFNLSEKQAN 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L++       I  E+ E+K  +   
Sbjct: 421 AILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSNKDLLLKIIKDELNEIKIKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT              + +IE++ + + +++ G+I+          +     + 
Sbjct: 481 -----RRTEIV--HGDGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQRRGGRGIQ 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHN 599
           A+  KE D ++  + + T D IL  S  G+ Y L A  +       + +    L+ L  N
Sbjct: 534 AMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLINLLPLEKN 593

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +     L++ +  G        +  +  + G   + +   +++  V   
Sbjct: 594 EKIQNVIYLKEFKPDRYLIMGTKNGLIKKTSLDQYSSIRKNGLNAINLRENDELISVRVT 653

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           TGD ++    +N   + F  +    M R   GV+  + +D      +     E    +  
Sbjct: 654 TGDCNIIYATKNGYAIKFDENDARPMGRNATGVKAITLRDDDEVVSMEVASDERD-LLVV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +        L KRGG G +  K   ++G  + +
Sbjct: 713 SENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGLLIGA 751


>gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
 gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
          Length = 862

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  +++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+ 
Sbjct: 1   MSD----LAKEIIPINIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELS 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMDRIAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LAL++N E++I++L++ I GPDFPTGG I+  R  I+++YR 
Sbjct: 177 GMATNIPPHNLTEVVDGCLALMENSELTIDELIQLIPGPDFPTGG-IINGRSGILDAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  +E +   G   I+VTE+PY V K+RL+EKIAEL+  K+I  +  +RDE
Sbjct: 236 GRGKIYVRARTEIETDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    R    ++++ +++  + M+  F +NM  L     P+ + L  IL  +
Sbjct: 296 SDKDGMRVVIELRRGELTEVMLNNLYTHTQMQNVFGINMVALV-NGQPKTLNLKEILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID +I +I+N   P           
Sbjct: 355 IDHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL  L  LE  +I
Sbjct: 415 WALGAVAEMLERAGGDAARPEWLEPEFGIRDDHYFLTEQQAQAILDLRLHKLTGLEHEKI 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL E  ++  +L S ++    I  E+  VK  F        +  +         
Sbjct: 475 LDEYRELLGEIAELLRILASPERLMEVIREELEFVKSQFGDKRRTEIQAASIEINMEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      +A   K+ D ++  L A+T D IL  S
Sbjct: 535 TPEDVVVTLSHEGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           T GK Y L    L        G  I  L+ L+ N+ I        YD    +   +  G 
Sbjct: 595 TQGKVYWLKVYQLPEASRTARGRPIINLLPLDENERITAILPVKSYDDDKYVFFATGDGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
               E S        G   + ++  + +  V    G+  + +  +  K++ F+   +  M
Sbjct: 655 VKKTELSAYSRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +     V       G   + +    Y +  +     +  R  +G + 
Sbjct: 715 GRTATGVRGMKLGETDKV-VSLIVPQNGGAILTATENGYGKRTDLAEYPVKSRATLGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            +   R+GK + +
Sbjct: 774 IQVTERNGKVVGA 786



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 101/366 (27%), Gaps = 23/366 (6%)

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  +++E L   +     +    +QA    + +   +    + +             
Sbjct: 495 PERLMEVIREELEFVKSQFGDKRRTEIQAASIEINMEDLITPEDVVVTLSHEGYVKYQPL 554

Query: 414 KPVMVSRFSLTENQVDAILNLRLR---SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                 R          + +        +    +  +       +   +       S   
Sbjct: 555 SDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFSTQGKVYWLKVYQLPEASRTA 614

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           +   I   +           D   R T    V        +         TV  +     
Sbjct: 615 RGRPIINLL---------PLDENERITAILPVKS--YDDDKYVFFATGDGTVKKTELSAY 663

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                 S  + A++  EGDSL           I+L S  GK       ++ S       +
Sbjct: 664 SR--PLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSMGRTATGV 721

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSE 647
           + +  L     +V+  V  +   +L  +  G     + +E    +R     + +      
Sbjct: 722 RGM-KLGETDKVVSLIVPQNGGAILTATENGYGKRTDLAEYPVKSRATLGVISIQVTERN 780

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFK 704
            K+   ++V   D + ++     L+   + ++  + R   GVRL    +D  +  +    
Sbjct: 781 GKVVGAIQVDESDEIMLITNAGTLVRTRVSEVGLIGRNTAGVRLIRTAEDEKLVSLERVA 840

Query: 705 ICEGLT 710
             EG  
Sbjct: 841 EPEGDE 846


>gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA]
 gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA]
          Length = 848

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 399/753 (52%), Gaps = 14/753 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V ++ +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+ +MSE+GL    
Sbjct: 2   SLNEGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ + ++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE ++ +L+  I GPDFPTG   +  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGA-TIMGKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D  
Sbjct: 241 IVRAKAEIEEEN-NRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +P++++  ++  + M+  F + M  L     PQV+ L  +L  ++  ++E
Sbjct: 300 RIVIELKKDANPNVILNLLYKHTKMQDTFGVIMLALV-NNEPQVLNLKQVLANYIEFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +   + R  IL+GL IA  NIDE+I IIR+       K  ++ RF L+E Q
Sbjct: 359 VVTRRTVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIERFQLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I+ E   L+   + ++S+L S ++  + I  E+ E+K  ++
Sbjct: 419 AQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSILASEEKLLSVIKDELIEIKNRYN 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                   +              +  +       +   +     S +     + A+  KE
Sbjct: 479 DERRTSIEKVVNDIDIEDLIQEEEVVITLTHSGYIKRISADTYSSQRRGGRGIQAMSTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTA 605
            D ++      T   +L  +  G+ Y L A  +       +      LI +  ++ I T 
Sbjct: 539 DDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGRTAKGTNIINLIAIEQDEKIETV 598

Query: 606 FVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                      L + + +G       SE     + G   + +   +++  V    GD  +
Sbjct: 599 LSVKDDVNEGFLFMGTKQGLVKKTPLSEFKNLRKNGLIAINLRDGDELLKVKITRGDADI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V ++   + F+   +  M R   GVR  + +   I+  +   + EG   +  +   + 
Sbjct: 659 VIVTQDGNAIRFNETDVRPMGRTASGVRSINLRKDDIAVCMDIAV-EGEDLLVISENGFG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +          KRGG G +  K   ++GK + +
Sbjct: 718 KRTPITEYKRQKRGGTGLITYKLSEKTGKVIGA 750



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 11/162 (6%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I++++ DG A      ++        +    I+L  +   V   +      LLV+S  G 
Sbjct: 658 IVIVTQDGNAIRFNETDVRPMGRTA-SGVRSINLRKDDIAVCMDIAVEGEDLLVISENGF 716

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQI 678
                 +E     R G   +     EK   +         D + ++  +   +  ++  I
Sbjct: 717 GKRTPITEYKRQKRGGTGLITYKLSEKTGKVIGATICKIDDELMLINTSGVAIRINVSDI 776

Query: 679 PEMSRGK-GVRLQSYKDGGISDVI-----CFKICEGLTWIDS 714
              SR   GV L    +      I          E    +DS
Sbjct: 777 SVTSRSTMGVTLMRTTEEEKIAAITKISGSIDDKEEQLTLDS 818


>gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999]
          Length = 885

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/787 (32%), Positives = 393/787 (49%), Gaps = 47/787 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF  
Sbjct: 2   TDRAKEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  +L  +D++ V+F   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMSKIAHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALI+NP  +IE+L+EYI GPDFPT  II   R+ I E+YR GRG  
Sbjct: 182 IPPHNLTEVINGCVALIENPACTIEELIEYIPGPDFPTAAIIS-GRKGIEEAYRTGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  +E    G   I+V E+PYQV K++LIEKIAEL+  KRI  +  +RDES +D  
Sbjct: 241 YLRARAEIEREDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R+   ++L+  ++  + ++T F +NM  L     P+V  L   L+ ++ HRRE
Sbjct: 301 RIVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALD-NNQPKVFNLKDTLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ + ++    R  +L+GL IA  NID +I +I+    P                 
Sbjct: 360 VVTRRTVYELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL+LRL  L  LE  +I SE  +
Sbjct: 420 AEMLERAGDDAARPDWLEPEYGIRDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKD 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++  +L S ++    I  E+  +++ F           +               
Sbjct: 480 LLDVIAELLRILGSSERLMEVIREELEAIRDEFGDDRRTEITAASHDIDLEDLIEREDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V         + K      SA   K+ D ++  L A+T D IL  ST G+ Y
Sbjct: 540 VTLSHEGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  ++ L   + I        +     + + ++ G     E 
Sbjct: 600 WLKVYQLPLASRNARGRPIVNILPLEEGERITAILPIKEFVDGKYVFMATTNGTVKKTEL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           ++       G   + ++   ++  V    GD  + +  +  K++ F  +Q+  M R   G
Sbjct: 660 TQYSRPRANGIIAVNLNDGNELIGVDLTDGDSEIMLFSDAGKVVRFHEEQVRPMGRTATG 719

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    ++      +     EG   + +    Y +  +        R   G +  K   R
Sbjct: 720 VRGIRLEEDQKVVSLIVPQGEGA-VLTATENGYGKRTDIAEYPAKSRATKGVVSIKVSER 778

Query: 747 SGKFLSS 753
           +G  + +
Sbjct: 779 NGLVVGA 785


>gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7]
 gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7]
 gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208]
 gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3]
          Length = 819

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 421/764 (55%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  +  +++ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRNGMRVVIELRRDANAHVILNNLYKQTALQTSFGINLLALVD-GQPKVLSLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+A   ++  +L + ++    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +IE+E I + +++ G+++          K
Sbjct: 476 KERFNDE-----RRTEIV--TSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   + +G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVSTFDEELYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F  + + +M R   GV+  +  D  +   +   + E
Sbjct: 649 LMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMGRTAAGVKGITLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        +  RGG G    K    +G  +
Sbjct: 708 DSHVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSNGPLV 751



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L          +I++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L  +  +V   + +    +L+V+  G       SE    +R GK        +    +
Sbjct: 691 ITLTDDDVVVGMEILEEDSHVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSNGPL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V    G+  + ++  +  L+   I+ I    R  +GVRL    D      +   
Sbjct: 751 VTVKATRGEEDLMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806


>gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
 gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
          Length = 846

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 402/759 (52%), Gaps = 28/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E N+    +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     +
Sbjct: 3   NEGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD +VYDSLVR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +
Sbjct: 183 PHNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKKAYETGRGKVII 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  +   +
Sbjct: 242 RSKAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++  + M+  F + M  L     P+V+ L  +LK ++  + EV+
Sbjct: 302 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALV-NGEPRVLSLKEVLKHYIKFQEEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR+            S+F+L+E Q +
Sbjct: 361 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISKFNLSEKQAN 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +   
Sbjct: 421 AILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSDKDLLLKIIKDELNEIKVKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT              + +IE+  + + +++ G+I+          +     + 
Sbjct: 481 -----RRTEIV--HGDGNDIDIEDLIEETDVVITLTHAGYIKRLPVETYSAQRRGGRGIQ 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHN 599
           A+  KE D ++  + + T D IL  S  G+ Y L A  +       + +    L+ L  +
Sbjct: 534 AMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLVNLLPLEKD 593

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +     L++ +  G        +  +  + G   + +   +++  V   
Sbjct: 594 EKIQNVIYLKEFKPDRYLIMGTKNGLIKKTSLDKYSSIRKNGLNAINLRENDELISVRVT 653

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           TGD ++    +N   + F  + +  M R   GV+  + +D      +     E    +  
Sbjct: 654 TGDCNIIYATKNGYAIKFDENDVRPMGRNATGVKAITLRDDDEVVSMEVASDERD-LLVV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +        L KRGG G +  K   ++G  + +
Sbjct: 713 SENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGLLIGA 751


>gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 807

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/748 (33%), Positives = 399/748 (53%), Gaps = 14/748 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V +   +   Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+EMGL     +KK
Sbjct: 6   DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTEA
Sbjct: 66  SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP H
Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP I++++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VRA
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   IV+TEIPY V K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 245 KAEIEEHK-GKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++ H+ +V+ R
Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYVDHQADVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA   IDE+I IIR+       K  ++ RF L++ Q  AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K  ++    
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASPRK 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                                 +       +        +S K     +  +  +E D +
Sbjct: 483 TVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGISTREDDFV 542

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY- 608
           +      T DR+L  +  GK Y+L   ++       +  AI  LI ++  + +       
Sbjct: 543 EDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLK 602

Query: 609 --DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             D    +L+ + KG        E  +  R G   + +   +++  V    G+  V +  
Sbjct: 603 KSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDELINVKLTNGEREVIIGT 662

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
                + F+   +  M R  +GV   S ++      +     +G   +    + + +  +
Sbjct: 663 AKGYAIRFNEKDVRPMGRVARGVMAISLREDDEVVEMDLVHPDGE-VLTVTEKGFGKRTD 721

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  R G G +  K   ++GK +S
Sbjct: 722 LEEYRIQGRAGKGIIAMKLSKKTGKLVS 749



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 64/480 (13%), Positives = 148/480 (30%), Gaps = 23/480 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A    E        I+   + +Q        K       +R  +LE ++       
Sbjct: 330 AIMLALVDGEPKILNLKQIIEKYVDHQADVVTRRTKFDLKKAEERAHILEGLKIALDYID 389

Query: 310 RIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            ++   ++   +      +   F LSD + +  ++M +  +  + +   ++  LKE +  
Sbjct: 390 EVINIIRSSKTEAIAKENLMKRFGLSDKQAQAIVDMRLGRLTGLERQ-KVEDELKELIEK 448

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-VMVSRFSLTEN 426
            +E+    +  R      + E+L+           +I     E   +  V +    +T  
Sbjct: 449 IKELKEILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMT 508

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               I  + L + +  +         +   +    D  + +   +      + +      
Sbjct: 509 HYGYIKRMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRT 568

Query: 487 SKSTDLGRRRT-------TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
               + GR+                   A +     +     ++ + +G I+        
Sbjct: 569 IDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFK 628

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   E D L      +    +++ +  G A      ++         +   
Sbjct: 629 SIKRNGIIAITLDENDELINVKLTNGEREVIIGTAKGYAIRFNEKDVRPMGRVARGVM-A 687

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-SSEEKM 650
           I L  + ++V   +     ++L V+ KG     +  E     R GK    +K+     K+
Sbjct: 688 ISLREDDEVVEMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKL 747

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  V   D   ++  N  L+   +  I +M R  +GV L   +DG           E 
Sbjct: 748 VSIRCVQPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807


>gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 821

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG+IDGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M++++  +L+ + ++ +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 119 AAAMRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NPEI+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++L+ +++  + ++T F +NM  L     P+V+ L   L  +L
Sbjct: 298 DRRGLRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVD-GEPKVLNLKQTLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF+
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFA 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   LL    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+       RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFNDE-----RRTEIT--IGGIESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++ ++ +        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLEVDKDEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFSNIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLDEDDHVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        +  RGG G        ++GK ++
Sbjct: 709 NMNVLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKNGKLVA 753



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 68/175 (38%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+ +  +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLDEDDHVVGMEIVEENMNVLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   ++QI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVEQISQMGRNTQGVRLIRLEDDQEVATVA 805


>gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
 gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
          Length = 816

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/758 (33%), Positives = 407/758 (53%), Gaps = 15/758 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +        +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M+E+ 
Sbjct: 1   MQDEKNTS--RILPIEIASEMKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELN 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++KSARIVG+V+GK HPHGD SVY ++V++AQ F  R PL+ G GNFG++DGDS
Sbjct: 59  LSPDKPYRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM++++  +L+ +D++ VDF   ++E   EP+V P++FPNLL NG++GIAV
Sbjct: 119 PAAMRYTEARMSKLSMELLRDIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ E+ +A + LID P+  +E+L+ Y+ GPDFPTG  I+   ESI E+YR 
Sbjct: 179 GMATSIPPHNLGEVIDATVHLIDRPDADVEELMGYVKGPDFPTGA-IIMGTESIKEAYRT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRAR  +EE+ +G   IVVTEIPYQV K+RL+E+IAEL+  K+I  + D+RDES
Sbjct: 238 GRGKIKVRARAEIEELPKGKQQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++ ++++ +++  S ME    + M  L     P+ + L  +L  ++
Sbjct: 298 NRNGMRIVIELKRDVNANIILNNLYKHSQMEETISVIMIALV-NGEPKCLNLKEVLHYYI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H+++V+ RR+ + +   + R  IL+GL IA  NID +I  IR+     + K  +V RF 
Sbjct: 357 EHQKDVVTRRTKYELNKAEARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL +RL  L  LE  +I +E D L+ +  ++  +L S +     I  EI E+
Sbjct: 417 LTEIQAQAILEMRLNRLTGLEREKIDAEYDELMKKIAELKEILASEEVLLGVIKDEIIEI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  ++       +               + A+       +        RS K     +SA
Sbjct: 477 KNKYTDERRTEIQHAEGEIDVIDLIDEEEIAITLTHFGYIKRLPADTYRSQKRGGRGISA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           L  +E D +K  +   T  R+L  +  G+ + L A  +  G+   +  AI  L+ L   +
Sbjct: 537 LTTREEDFVKHLISTTTHSRLLFFTNRGRVFRLNAYEIPEGKRQAKGTAIVNLLQLGPGE 596

Query: 601 DIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I T    D       LL+ + KG     + S+     + G   + +   +++  V    
Sbjct: 597 KIATLIDVDGKEENKYLLIATKKGMVKKTKISDFKNINKSGLISIGLKEGDEVIGVKLTD 656

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  V +V  N   + FS   +  M R   GV+  +  +G     +     EG   +  +
Sbjct: 657 GEQDVMLVTRNGMSIRFSEKDVRGMGRTAMGVKGITLGEGDTVVSMSLA-SEGTDMLVVS 715

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +  +        R G G        ++G  + +
Sbjct: 716 ENGFGKRTDLEEYRSQIRAGKGIKTYNISEKTGSIVGA 753



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 70/199 (35%), Gaps = 12/199 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E+    ++ + +G ++  K           L ++  KEGD +           ++L++ 
Sbjct: 607 KEENKYLLIATKKGMVKKTKISDFKNINKSGLISIGLKEGDEVIGVKLTDGEQDVMLVTR 666

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           +G +      ++         +   I L     +V+  +      +LVVS  G     + 
Sbjct: 667 NGMSIRFSEKDVRGMGRTAMGV-KGITLGEGDTVVSMSLASEGTDMLVVSENGFGKRTDL 725

Query: 629 SEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            E  +  R GK      +   +   +   +    D + ++  +  L+   +++I    R 
Sbjct: 726 EEYRSQIRAGKGIKTYNISEKTGSIVGAEMVAEDDEMMIINSDGVLIRIKVNEISIFGRV 785

Query: 684 GKGVRLQSYKDGGISDVIC 702
             GV+L +  +      I 
Sbjct: 786 TSGVKLMNVDEEVSIVSIA 804


>gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 807

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/748 (33%), Positives = 400/748 (53%), Gaps = 14/748 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V +   +   Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+EMGL     +KK
Sbjct: 6   DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTEA
Sbjct: 66  SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP H
Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP I++++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VRA
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   IV+TEIPY V K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 245 KAEIEEHK-GKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++ H+ +V+ R
Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYVDHQADVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA   IDE+I IIR+       K  ++ RF L++ Q  AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K  ++    
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASPRK 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                                 +       +        +S K     +  +  +E D +
Sbjct: 483 TVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGISTREDDFV 542

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY- 608
           +      T DR+L  +  GK Y+L   ++       +  AI  LI ++  + +       
Sbjct: 543 EDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLK 602

Query: 609 --DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             D    +L+ + KG        E  +  R G   + +   +++  V    G+  V +  
Sbjct: 603 KSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDELINVKLTNGEREVIIGT 662

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
               ++ F+   +  M R  +GV   S ++      +     +G   +    + + +  +
Sbjct: 663 AKGYVIRFNEKDVRPMGRVARGVMAISLREDDEVVEMDLVHPDGE-VLTVTEKGFGKRTD 721

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  R G G +  K   ++GK +S
Sbjct: 722 LEEYRIQGRAGKGIIAMKLSKKTGKLVS 749



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 63/480 (13%), Positives = 147/480 (30%), Gaps = 23/480 (4%)

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             + A    E        I+   + +Q        K       +R  +LE ++       
Sbjct: 330 AIMLALVDGEPKILNLKQIIEKYVDHQADVVTRRTKFDLKKAEERAHILEGLKIALDYID 389

Query: 310 RIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            ++   ++   +      +   F LSD + +  ++M +  +  + +   ++  LKE +  
Sbjct: 390 EVINIIRSSKTEAIAKENLMKRFGLSDKQAQAIVDMRLGRLTGLERQ-KVEDELKELIEK 448

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-VMVSRFSLTEN 426
            +E+    +  R      + E+L+           +I     E   +  V +    +T  
Sbjct: 449 IKELKEILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMT 508

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               I  + L + +  +         +   +    D  + +   +      + +      
Sbjct: 509 HYGYIKRMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRT 568

Query: 487 SKSTDLGRRRT-------TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
               + GR+                   A +     +     ++ + +G I+        
Sbjct: 569 IDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFK 628

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   E D L      +    +++ +  G        ++         +   
Sbjct: 629 SIKRNGIIAITLDENDELINVKLTNGEREVIIGTAKGYVIRFNEKDVRPMGRVARGVM-A 687

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV-SSEEKM 650
           I L  + ++V   +     ++L V+ KG     +  E     R GK    +K+     K+
Sbjct: 688 ISLREDDEVVEMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKL 747

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             +  V   D   ++  N  L+   +  I +M R  +GV L   +DG           E 
Sbjct: 748 VSIRCVQPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807


>gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath]
 gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath]
          Length = 860

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/788 (31%), Positives = 396/788 (50%), Gaps = 49/788 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + +  V+L   +++ YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+  
Sbjct: 2   TAFAKEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD  AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF   Y++ + EP V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEVRMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A LALI+NPE  ++ L+ ++ GPDFPT G I+     I E+Y  GRG  
Sbjct: 182 IPPHNLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAG-IINGAAGIREAYLTGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR   E    G   I+V E+PYQV K+RL+EKIAEL+   ++  +  +RDES +D  
Sbjct: 241 YLRARCQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + M++ F +NM  L +   P++M L  ++  ++ HRRE
Sbjct: 301 RMVIELRRGEAPEVVLNNLYQQTQMQSVFGINMVAL-LNGRPRLMNLRDLIAAFIDHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+   ++    R  +L+GL +A  NIDE+I +I++   P                 
Sbjct: 360 VVTRRTLHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVV 419

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  Q  AIL+LRL  L  LE+ +I +E  
Sbjct: 420 TELLERADAAEASRPRDLDPVYGLREGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL +   +  +L    +    I  E+  ++E F                +         
Sbjct: 480 ALLEQIADLLDILAKDTRLMQVIRDELVAIREQFGDPRRTEIIADRLDLSAEDLITEEDM 539

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +       V        R+ +       A   KE D ++  + A+T D IL  S+ GK 
Sbjct: 540 VVTVSHEGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTILCFSSSGKV 599

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L    L   S    G     L+ L   + I        +D    + + ++ G    V 
Sbjct: 600 YWLKVYELPVASRTARGRPFVNLLPLEEGERINAILPIREFDEAHFIFMATASGTVKKVA 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GK 685
            SE       GK  +++  ++++  V    G+  V +   + K++ F    +  M R   
Sbjct: 660 LSEFERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETDVRAMGRTAA 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR  + ++G    VI   I    T ++     Y +          +RGG G +  +   
Sbjct: 720 GVRGMTLQEGR--KVIALIIASEGTVLNITENGYGKRTRLEEFPRHRRGGQGVIAIQTSA 777

Query: 746 RSGKFLSS 753
           R+G  + +
Sbjct: 778 RNGAVVGA 785



 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 61/184 (33%), Gaps = 7/184 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +         +       A+  ++ D L      +    ++L S+DGK       ++ +
Sbjct: 654 TVKKVALSEFERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETDVRA 713

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 A    + L   + ++   +      +L ++  G        E   + R G+  +
Sbjct: 714 MGRTA-AGVRGMTLQEGRKVIALIIASEGT-VLNITENGYGKRTRLEEFPRHRRGGQGVI 771

Query: 643 KV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +     +   +   +    D + ++ +   L+   + +I  +SR  +GV +     G  
Sbjct: 772 AIQTSARNGAVVGAALVEDEDEIMLITDAGTLVRTRVSEISVLSRNTQGVTVIRLNPGEK 831

Query: 698 SDVI 701
              +
Sbjct: 832 VVGM 835


>gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4]
 gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4]
          Length = 879

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/795 (34%), Positives = 413/795 (51%), Gaps = 63/795 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALID P +SIE+L+E+I GPDFPT   IV  R+ I ++Y+ GRG  
Sbjct: 182 IPPHNLSEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAA-IVNGRKGIEDAYKTGRGKA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRARATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + ++T F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEVKRGEVGEVILNNLYAQTQLQTSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL+LRL  L  LE  +I SE + 
Sbjct: 420 QGMLEKAGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E++EV E+F        RRT   E++ +      + 
Sbjct: 480 LLELIAALLYILRSPERLMEVIKEELQEVLEVFGDE-----RRT---ELNASAVDISLED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S +  G  I  L+ L   + I        YD+   +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRQARGRPIINLLPLAEGERITAILPVREYDADKYVIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G        +       G   + +   +++  V    GD  V +     K++ FS DQ+ 
Sbjct: 652 GTVKKTSLDQYSRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVR 711

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GVR    +DG     +     +G   +      Y +           R   G 
Sbjct: 712 GMGRTATGVRGIKLEDGQSVVSLIVPKNDGA-ILTVTENGYGKRTELDEYPAKSRATKGV 770

Query: 739 LVPKGFPRSGKFLSS 753
           +  K   R+G  + +
Sbjct: 771 VSIKVSERNGAVVGA 785


>gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
 gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
          Length = 811

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 419/760 (55%), Gaps = 19/760 (2%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N+  +N      +    +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M+E+
Sbjct: 2   NMEENN-----RIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNEL 56

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD
Sbjct: 57  NLTPDKPYRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGD 116

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA+M++++  +L+ +D++ VDF   ++E   EP V P++FPNLL NG++GIA
Sbjct: 117 SPAAMRYTEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIA 176

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIP HN+ E  +A + LIDNP+  +++L++YI GPDFPTG  I+  ++SI E+YR
Sbjct: 177 VGMATSIPPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGA-IIMGKDSIAEAYR 235

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  +VR+R  +EE+ +G   IVVTEIPYQV K++L+E+IAEL+  KRI  + D+RDE
Sbjct: 236 TGRGKVKVRSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R ++ ++++ +++  S +E  F + M  L    VP+++ L  IL  +
Sbjct: 296 SNRNGMRIVIELKRDVNANIVLNNLYKHSQLEDTFSIIMLSLV-NGVPRILNLKQILHYY 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRF 421
           + H+++V+ RR+ F +     R  IL+GL IA   IDE+I++IR+    +      + +F
Sbjct: 355 VEHQKDVVTRRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDKF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q  AIL++RL+ L  LE  ++++E + L+ + E ++S+L   +     I  EI E
Sbjct: 415 KLSEIQAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLESILADEQLLLGVIKDEILE 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +K+ +S +     R        +      +  +       +        +S +     +S
Sbjct: 475 IKKKYSDARRTEIRHAEGEIDIKDLIDDEEITITLTHFGYIKRLPLDTYKSQRRGGRGIS 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
           AL  +E D +K  +   T +R+L  +  G+ + L A  +  G+   +  AI  L+ L  N
Sbjct: 535 ALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPEGKRQAKGTAIVNLLQLGPN 594

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I T        D    LL+ + KG     + SE     + G   + +  ++++  V  
Sbjct: 595 EKIATLIEVDGRADDDSYLLLATKKGIVKKTKRSEFKNINKSGLIAIGLRDDDELIDVKT 654

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
             G+  V +V  N   + F    I  M R   GV+  +  +G     +     EG   + 
Sbjct: 655 TNGEKDVLLVTSNGMSIRFDEKDIRPMGRTAMGVKGITLSEGDKVVSMSLS-DEGEDLLV 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   Y +  +        R G G        ++G+ + +
Sbjct: 714 VSQNGYGKRTDINEYRSQIRAGKGIKTYNMSEKTGEIVGA 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 6/192 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++           +   L A+  ++ D L      +    +LL++++G +      ++  
Sbjct: 621 IVKKTKRSEFKNINKSGLIAIGLRDDDELIDVKTTNGEKDVLLVTSNGMSIRFDEKDIRP 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
                  +   I L+    +V+  + D    LLVVS  G     + +E  +  R GK   
Sbjct: 681 MGRTAMGV-KGITLSEGDKVVSMSLSDEGEDLLVVSQNGYGKRTDINEYRSQIRAGKGIK 739

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
              +   + E +   +    D + ++  +  L+   +D I    R   GV+L    D   
Sbjct: 740 TYNMSEKTGEIVGATMVNNEDELMLINSDGVLIRLRVDDISVFGRITSGVKLMKTDDEVN 799

Query: 698 SDVICFKICEGL 709
              I     E  
Sbjct: 800 VVSIAKIDTEEE 811


>gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9]
          Length = 805

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/751 (32%), Positives = 402/751 (53%), Gaps = 14/751 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     
Sbjct: 1   MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RY
Sbjct: 61  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   
Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   
Sbjct: 240 VRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    + ++P +++  ++M + M+  F   M  L     P+++ L  I+++++ H+ +V
Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYVDHQADV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q 
Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++ 
Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                                    +       +        ++ K     +  +  +E 
Sbjct: 478 PRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTRED 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   + +    
Sbjct: 538 DFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVI 597

Query: 607 VYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
               +     +++ + KG        E  +  R G   + +   +++       G+  + 
Sbjct: 598 PLKKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEENDELINTKLTNGEREII 657

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +       + F+   I  M R  KGV   S ++     V    +  G   +    + + +
Sbjct: 658 IGTAKGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPGSEILVVTEKGFGK 716

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     L  R G G +  +   ++GK +S
Sbjct: 717 RTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 747



 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+ KG     
Sbjct: 660 TAKGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPGSEILVVTEKGFGKRT 718

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   + +I +M 
Sbjct: 719 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMH 778

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 779 RDTRGVTLMKLDDGDRVVSTARIENEE 805



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 62/193 (32%), Gaps = 18/193 (9%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   IA  + E  E+ +     G R               ++ +               
Sbjct: 629 KRNGIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPMG----------- 677

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  +  + A+  +E D +      H    IL+++  G                G+ 
Sbjct: 678 -----RVAKGVIAISLREDDEVVEMDLVHPGSEILVVTEKGFGKRTDLEEYRLQTRAGKG 732

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           I  +        +V+    +   + +++S+ G    ++ SEI    R  +G T +K+   
Sbjct: 733 IIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDG 792

Query: 648 EKMKLVVKVTGDH 660
           +++    ++  + 
Sbjct: 793 DRVVSTARIENEE 805


>gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72]
 gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
          Length = 877

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/797 (30%), Positives = 396/797 (49%), Gaps = 64/797 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+++PE  +E L+E +  PDFPT G ++     + E YR GRG  
Sbjct: 182 IPPHNLGEVVDACLKLLEDPETDLEALIEIVKAPDFPTAG-LIYGLHGVHEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +RAR  +E +G+      I+V E+PYQV K  L+E+IAEL+  K++  + +IRDES + 
Sbjct: 241 VMRARTHIEPIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKS 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R+  P++++ +++  + ++  F +NM  L     P+++ L  +L  +L HR
Sbjct: 301 GMRVVIELKRNEMPEVVLNNLYKHTQLQDTFGMNMVALVD-GKPRLLNLKQMLVCFLEHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------- 415
           REV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+    P               
Sbjct: 360 REVVTRRTIFELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSP 419

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q  AIL LRL+ L  LE+ +I  E 
Sbjct: 420 LVEEMLSRALADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++     +  +L   ++    I  E+  ++  F        RR+       +      
Sbjct: 480 REVMDLITDLLDILARPERITAIIVEELTAIRNQFGDP-----RRSEIV---LSTAEINI 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  E + V +S+ G+ +          +       A   K+ D +     A+T D +
Sbjct: 532 EDLITPEDMVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTV 591

Query: 564 LLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+AY L    +        G+ I  L  L   + I        +D    + + +
Sbjct: 592 LCFSSRGRAYWLKVYEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPVQTFDEEHFVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
           S+G       +      + G   + +   + +  V    G+  V +  +  K + F+   
Sbjct: 652 SEGTVKKTALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRFAESD 711

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR  + +DG     +     E  + + +    Y +           RG  
Sbjct: 712 VRPMGREARGVRGMTLEDGQRVIAMLVAKGETQSVLTATENGYGKRTPVAEYTRHGRGTK 771

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK + +
Sbjct: 772 GMIAIQTSDRNGKLVGA 788



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 71/221 (32%), Gaps = 10/221 (4%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           +   ++  +        +               + A++  +GD L           ++L 
Sbjct: 639 QTFDEEHFVFMATSEGTVKKTALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLF 698

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFI 625
           S  GKA      ++         ++ +  L   Q ++   V    T  +L  +  G    
Sbjct: 699 SDAGKAVRFAESDVRPMGREARGVRGM-TLEDGQRVIAMLVAKGETQSVLTATENGYGKR 757

Query: 626 VEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM 681
              +E   + R  K  + + + ++   +   V V   D V ++     L+   +  I E+
Sbjct: 758 TPVAEYTRHGRGTKGMIAIQTSDRNGKLVGAVLVDPTDEVMLISTGAVLIRTKVQDIREL 817

Query: 682 SRG-KGVRLQSYKDGGI---SDVICFKICEGLTWIDSAGRS 718
            R  +GV L +  +G      + +     E    ++     
Sbjct: 818 GRATQGVTLINLDEGTYLAGIEKVAESGAEADELVEGGEEG 858


>gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
 gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580]
 gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580]
 gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
          Length = 822

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 419/764 (54%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  +      V+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQHKP---QVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G ++  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAG-LILGRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGINLLALVD-GQPKVLSLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR++F ++  + R  IL+GL +A  ++DE+I++IRN       K  ++ +FS
Sbjct: 356 DHQKVVIRRRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEKFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVELIAELKAILADEEKVLEIIREELTEV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +I +E I V +++ G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--TSGLETIEDEDLITRENIVVTLTHNGYIKRLPSSTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGIQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   +  G +     S+       G   L +  E++
Sbjct: 589 LLEVEKGEWINAIIPVGEFDDESYLFFTTKHGISKRTPLSQFANIRNNGLIALSLRDEDE 648

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G+  + +  +N  L+ F    + +M R   GV+  +  D  +   +   + E
Sbjct: 649 LIAVRLTDGNKQIIIGTKNGLLIRFPETDVRQMGRTAAGVKGINLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +    + Y +        +  RGG G    K    +G  +
Sbjct: 708 DSHVLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENNGSLV 751



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E      A +     + E      +  G  +              L AL  ++ D L 
Sbjct: 591 EVEKGEWINAIIPVGEFDDESYLFFTTKHGISKRTPLSQFANIRNNGLIALSLRDEDELI 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                    +I++ + +G     P  ++        A    I+L  +  +V   + +   
Sbjct: 651 AVRLTDGNKQIIIGTKNGLLIRFPETDVRQMGRTA-AGVKGINLTDDDVVVGMEILEEDS 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+ KG   +   SE    +R GK         +   +  V   TG+  + ++  + 
Sbjct: 710 HVLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENNGSLVTVKATTGEEDLMIITASG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++   I  I    R  +GVRL    +      +     +  
Sbjct: 770 VIIRMDIKDISTTGRVTQGVRLIRLGEQEHVATVALVEKDEE 811


>gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
          Length = 809

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/752 (33%), Positives = 388/752 (51%), Gaps = 13/752 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  G 
Sbjct: 2   DFGEGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM++VAEL+LQ +D++ VDF   Y+E   EP V P+KFP LLANGT+GIAVGMAT+
Sbjct: 122 YTEVRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L LID P+ ++E+L+  I GPDFPT G ++   E I ++Y  GRG  
Sbjct: 182 IPPHNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAG-LILGTEGIRQAYTTGRGVI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RAR  +E    G   I+VTE+PYQV K+RL+EKIAEL+  K I  +  + DES     
Sbjct: 241 KLRARVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  + ++++  ++  + ++  F + M  L     P+V+ L  +L  ++ H+++
Sbjct: 301 RIVIDVRRDANANVILNQLYKHTQLQDSFGVIMLALVD-GSPRVLTLKEVLHYYIKHQQD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + +   + R  IL+GL IA  ++D +I  IR        +  ++  F L+E Q
Sbjct: 360 VITRRTKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLMEDFKLSEKQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +I+ E   +L   + + S+L    +    I  E+  V+E + 
Sbjct: 420 AQAILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLADEGKIDKIIKDELLAVREKYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                     T         A     +       +        R  K   V ++ +  KE
Sbjct: 480 DERRTEITIDTSEINVEDLIAQEDVVITLTHNNYIKRMPLDTYRRQKRGGVGVTGMGTKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  L   T   IL  +  G+ Y L A  +       +  AI  L+ L   + I   
Sbjct: 540 ADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQAKGTAIINLLQLESEEKITAV 599

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +     L + + KG       SE  +  R G   + +  ++ +  V    G+ HV
Sbjct: 600 IQVKEFLPERYLFMATKKGIVKKTSLSEFQSIRRGGLNAINLDEDDDLIGVKFTDGEKHV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +       + F+ D +  M R  +GV+  + K G +  V    +      +      Y 
Sbjct: 660 ILGTAGGMAVAFAEDDVRSMGRTARGVKGINLKAGDVV-VGMDNLARNAEVLTITAEGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        L  RGG G +  K   ++G  + 
Sbjct: 719 KRTATSEYRLQTRGGKGLINMKVTEKTGAVIG 750



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           ++ ++L T G      A + +   G        I+L     +V         ++L ++++
Sbjct: 656 EKHVILGTAGGMAVAFAEDDVRSMGRTARGVKGINLKAGDVVVGMDNLARNAEVLTITAE 715

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV----VKVTGDHVAVVGENRKLLIFSID 676
           G       SE    TR GK  + +   EK   V    V   G  + ++  +  ++   +D
Sbjct: 716 GYGKRTATSEYRLQTRGGKGLINMKVTEKTGAVIGLKVVRPGQELILITTDGIVIRTKVD 775

Query: 677 QIPEMSR-GKGVRLQSYKDGGIS 698
           +I  +SR  +GV++    +G  +
Sbjct: 776 EISVISRNTQGVKVVRLGEGDKA 798



 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  +        ++   V     +L+++++ G   
Sbjct: 711 TITAEGYGKRTATSEYRLQTRGGKGLINMKVTEKTGAVIGLKVVRPGQELILITTDGIVI 770

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKL 652
             +  EI   +R   G   +++   +K   
Sbjct: 771 RTKVDEISVISRNTQGVKVVRLGEGDKAAS 800


>gi|297543508|ref|YP_003675810.1| DNA gyrase subunit A [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 805

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/751 (32%), Positives = 402/751 (53%), Gaps = 14/751 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     
Sbjct: 1   MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RY
Sbjct: 61  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   
Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   
Sbjct: 240 VRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    + ++P +++  ++M + M+  F   M  L     P+++ L  I+++++ H+ +V
Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYVDHQADV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q 
Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++ 
Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                                    +       +        ++ K     +  +  +E 
Sbjct: 478 PRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTRED 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF 606
           D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   + +    
Sbjct: 538 DFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGEKVTAVI 597

Query: 607 VYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
               +     +++ + KG        E  +  R G   + +   +++       G+  + 
Sbjct: 598 PLKKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEENDELINTKLTNGEREII 657

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +       + F+   I  M R  KGV   S ++     V    +  G   +    + + +
Sbjct: 658 IGTAKGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPGSEILVVTEKGFGK 716

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     L  R G G +  +   ++GK +S
Sbjct: 717 RTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 747



 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+ KG     
Sbjct: 660 TAKGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPGSEILVVTEKGFGKRT 718

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   + +I +M 
Sbjct: 719 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMH 778

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 779 RDTRGVTLMKLDDGDRVVSTARIENEE 805



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 62/193 (32%), Gaps = 18/193 (9%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   IA  + E  E+ +     G R               ++ +               
Sbjct: 629 KRNGIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPMG----------- 677

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  +  + A+  +E D +      H    IL+++  G                G+ 
Sbjct: 678 -----RVAKGVIAISLREDDEVVEMDLVHPGSEILVVTEKGFGKRTDLEEYRLQTRAGKG 732

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           I  +        +V+    +   + +++S+ G    ++ SEI    R  +G T +K+   
Sbjct: 733 IIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDG 792

Query: 648 EKMKLVVKVTGDH 660
           +++    ++  + 
Sbjct: 793 DRVVSTARIENEE 805


>gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 822

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 422/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQEQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQTLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQQVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++  + +        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLEVDKGEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   ++      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKD 810

Query: 708 GLT 710
              
Sbjct: 811 EEE 813


>gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
 gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
          Length = 821

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 422/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQEQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQTLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQQVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++  + +        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLEVDKGEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   ++      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKD 810

Query: 708 GLT 710
              
Sbjct: 811 EED 813


>gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
 gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
          Length = 810

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 397/760 (52%), Gaps = 29/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM E G     
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSAR VG+V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG+IDGD  AA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++ +A  +++ +D+D VDF   ++E + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E  +  + LID P+ +   L++ I GPDFPTGGIIV  RE I ++Y  GRG  
Sbjct: 183 IPPHNLREAIDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGII 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   +E    G   IVVTEIPY+V KS++IEKIAEL+  +RI  + D+RDE+     
Sbjct: 242 TIRAHAQIETAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGL 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  +P++++  ++  + M+  + +    L     P+V+ L  +L+ +L H+++
Sbjct: 302 RVVIELARGANPNVILNQLYKFTPMQVSYGIIQLALVD-GQPRVLTLKQLLRHYLDHQKD 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+   +   + R  IL+GL IA  +ID +I +IR            +  F+LTE Q
Sbjct: 361 VIVRRTRHDLAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMENFNLTEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +++ E   LL E E + ++LNS K   + I  E+ E+++ F 
Sbjct: 421 AQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELGEIRDRFG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RRT              + +I +E + + +++RG+I+ L   +          
Sbjct: 481 D-----DRRTKIV---AGAAEFEVEDLIAEEDVVITLTHRGYIKRLPVDTYRSQRRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++ +  +E D +     A T + +L  +  GK Y      +        G A+  LI++ 
Sbjct: 533 ITGIQTREEDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEASRTARGTAVVNLIEIG 592

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ +        +     LL+ + +G       +E     R G   L +   +++  V 
Sbjct: 593 QDEQVTAVIPVRDFGEDRDLLMCTRRGVVKRTALAEFGHIRRGGLIALSLDPGDELVAVQ 652

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V ++    + + F + ++  M R  +GV     ++G     +     E    +
Sbjct: 653 LTDGRGDVLLLTRQGQAIRFPVAEVRTMGRTARGVMGIRLEEGDEVVGMEVADDE-AHLL 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               R Y +           RGG G        R+G+   
Sbjct: 712 VITDRGYGKRTPVREFRAQGRGGKGIRAITLTARNGQVAG 751



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L AL    GD L           +LLL+  G+A   P   + +       +   I L  
Sbjct: 636 GLIALSLDPGDELVAVQLTDGRGDVLLLTRQGQAIRFPVAEVRTMGRTARGVMG-IRLEE 694

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV 656
             ++V   V D    LLV++ +G        E  A  R  KG   + +++        +V
Sbjct: 695 GDEVVGMEVADDEAHLLVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARNGQVAGFEV 754

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
              G+ V ++ +   +L   +DQ+    R  +GV +   + G     +      G 
Sbjct: 755 VRPGEEVMLISQGGIVLRVPVDQVSIQGRAAQGVTVMRLEPGDRVSAVATVAQRGD 810


>gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
 gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
          Length = 810

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 399/760 (52%), Gaps = 29/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G     
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSAR VG+V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG+IDGD  AA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++ +A  +++ +D+D VDF   ++E + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E  +  + LID+P+     L++ I GPDFPTGGIIV  RE I ++Y  GRG  
Sbjct: 183 IPPHNLREAIDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGII 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   +E    G   IVVTEIPY+V KS++IEKIAEL+  +RI  + D+RDE+     
Sbjct: 242 TIRAHAQIETSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGL 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  +P++++  ++  + M+  + + +  L     P+V+ L  +L+ +L H+++
Sbjct: 302 RVVIELARGANPNVILNQLYKFTPMQVSYGIILLALVD-GQPRVLTLKQLLRHYLDHQKD 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+   ++  + R  IL+GL IA  +ID +I +IR            +  FSLTE Q
Sbjct: 361 VILRRTRHDLEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMESFSLTEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +++ E   LL E E + ++LNS K   + I  E+ E+++ F 
Sbjct: 421 AQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELAEIRDRFG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RRT              + +I +E + + +++RG+I+ +  ++          
Sbjct: 481 D-----DRRTKIV---SGAADFEVEDLIAEEDVVITLTHRGYIKRMPVNTYRSQRRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           ++ +  +E D +     A T + +L  +  GK Y      +        G A+  LI++ 
Sbjct: 533 VTGIQTREEDFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEAGRTARGTAVVNLIEIE 592

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ +        +     LL+ + +G       +E     R G   L +   +++  V 
Sbjct: 593 RDEQVTAVIPVRDFGEDRDLLMCTRRGVVKRTALAEFSHIRRGGLIALALDPGDELVAVE 652

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V VV    + + F + ++  M R  +GV      +G     +     E    +
Sbjct: 653 LTDGRGDVLVVTRLGQAIRFPVAEVRTMGRAARGVMGIRLDEGDEVVGMEVADDE-AHLL 711

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +           RGG G        R+G+   
Sbjct: 712 VITDLGFGKRTPVREFRAQGRGGKGIRAISLTARNGRVAG 751



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 6/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L AL    GD L           +L+++  G+A   P   + +       +   I L+ 
Sbjct: 636 GLIALALDPGDELVAVELTDGRGDVLVVTRLGQAIRFPVAEVRTMGRAARGVMG-IRLDE 694

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV--SSEEKMKLVV 654
             ++V   V D    LLV++  G        E  A  R  KG   + +   +       V
Sbjct: 695 GDEVVGMEVADDEAHLLVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARNGRVAGFEV 754

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
              G+ V ++ +   +L   +DQ+    R  +GV +   + G     +     +G 
Sbjct: 755 VRPGEEVMLISQGGIVLRVPVDQVSVQGRAAQGVTVMRLEPGDRVSAVATVAHKGD 810


>gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396]
 gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396]
          Length = 879

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/786 (31%), Positives = 400/786 (50%), Gaps = 48/786 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G D+  ++
Sbjct: 4   LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKSY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VDF   Y+  +  PVV P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMEKIAHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA +DN +I+I++L+E+I GPDFPT   I+  R  I+E+YR GRG   +
Sbjct: 184 PHNLTEVVNGCLAYLDNSDITIDELMEFIPGPDFPTAA-IINGRAGILEAYRTGRGRIYI 242

Query: 253 RARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR+ +E+  +     IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES+++   
Sbjct: 243 RARYEIEQDKKTSKETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  + D+LM ++F L+ +ET F +NM  L     P+++ L   ++ ++ HRREV
Sbjct: 303 VVIELRRGENADVLMNNLFALTPLETVFGINMVALI-NGEPKLLNLKDCIECFVRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RR+ + ++    R  IL+G  +A  NID +IA+I+                       
Sbjct: 362 VTRRTIYELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVT 421

Query: 420 -------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+E Q  +IL+LRL+ L  LE  +I  E  ++
Sbjct: 422 GMLERAGEDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSI 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           + +  ++  +L + ++    I  E+  V+E F          +          A     +
Sbjct: 482 IEQIAELLEILQNPERLMAVIREELEAVREEFGDVRVTEITASKRDLTIADLIAEEDMVV 541

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
                           ++ K      +A   ++ D ++  L A++ D IL  ++ GK Y 
Sbjct: 542 TLSHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLYW 601

Query: 575 LPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEES 629
           L    +        G  I  ++ L  N+ I T            + + + +G        
Sbjct: 602 LKTYEIPQASRISRGRPIVNILPLAENERITTMLPVREYTADHYVFMATRQGTVKKTPLE 661

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   L +   + +       G   V +   + K + F+ D +  M R  +GV
Sbjct: 662 NFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPMGRTARGV 721

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      G    V      E    + ++ + Y +        +  RGG G +  +   R+
Sbjct: 722 RGIRLAQGQTV-VSLIIPQEDAYILTASRKGYGKRTAVSEFPVYGRGGQGVIAIQCSERN 780

Query: 748 GKFLSS 753
           G  +S+
Sbjct: 781 GDLVSA 786



 Score = 94.8 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 104/361 (28%), Gaps = 22/361 (6%)

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
                 +   ++ +       +   + +++   +            + +       + T 
Sbjct: 512 EFGDVRVTEITASKRDLTIADLIAEEDMVVTLSHKGYAKTQPLEAYQAQKRGGKGKAATA 571

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            + +  +   L  +    +  +       L   +  +    S   +   I   +      
Sbjct: 572 IRDEDFVEKLL--IANSHDTILCFTSHGKLYWLKTYEIPQASRISRGRPIVNIL------ 623

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                    R TT   V            +     TV  +        +  S  L AL  
Sbjct: 624 ---PLAENERITTMLPVRE--YTADHYVFMATRQGTVKKTPLENFSRPR--SSGLIALAL 676

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            EGD L  A        ++L S+ GKA      ++         ++  I L   Q +V+ 
Sbjct: 677 DEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPMGRTARGVRG-IRLAQGQTVVSL 735

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHV 661
            +      +L  S KG       SE     R G+  + +     + + +  V  ++GD +
Sbjct: 736 IIPQEDAYILTASRKGYGKRTAVSEFPVYGRGGQGVIAIQCSERNGDLVSAVQVISGDQL 795

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSY 719
            ++     L+    D++  + R  +GVRL    +   +  V      E            
Sbjct: 796 MLISNQGTLVRTRSDEVSIVGRNTQGVRLIRLSESEDLVGVERIAEPEEDESDFQGEEGE 855

Query: 720 N 720
            
Sbjct: 856 G 856


>gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
 gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
          Length = 823

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L]
 gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus E33L]
          Length = 823

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
 gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
          Length = 841

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/765 (32%), Positives = 418/765 (54%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++       VK +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MADTP---NSQVKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD+
Sbjct: 58  MHSDKPFKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ +++D +D++D Y+  + EPVV P++FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTEARMSKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+   P++++++L+E I GPDFPT G ++  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAG-LILGRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V EIPYQV K++LIEKIAEL+  KRI  + D+RDES
Sbjct: 237 GRGSITLRAKVEIEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    +  + ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRNGMRIVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVD-GQPKVLNLKQCLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H++ V+ RR+ F ++  + R  IL+GL IA  ++DE+I +IR+       +  ++++F+
Sbjct: 356 DHQKVVIRRRTEFELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTKFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+A   ++ ++L   ++    I  E+ EV
Sbjct: 416 LSEKQAQAILDMRLQRLTGLEREKIEDEYSSLVALIAELKAILADEEKVLEIIREELTEV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+      +RRT     +   +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFND-----KRRTEIV--AGGIEQIEDEDLIPRENIVLTLTHKGYIKRLPVSTYRAQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  +  GK Y      +       +   I  
Sbjct: 529 RGGRGIQGMGTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPEFSRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++ ++ +        +     L   + +G +     S        G   L +  +++
Sbjct: 589 LLGVDKDEWVNAIIPVEEFADDWFLFFTTKQGISKRSPLSSFANIRNNGLIALNLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +   +  L+ F  + +  M R   GV+  S   G    V    + +
Sbjct: 649 LISVRLTDGSKEIIIGTSHGMLIRFPEEDVRSMGRTATGVKGISLSAGDEV-VGMEVLED 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        +  RGG G        ++G  +S
Sbjct: 708 DSQILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNITDKNGSLVS 752



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL+ +E D L        +  I++ ++ G     P  ++ S       +   
Sbjct: 632 NIRNNGLIALNLREDDELISVRLTDGSKEIIIGTSHGMLIRFPEEDVRSMGRTATGV-KG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+   ++V   V +   ++L+V+  G        E     R GK      +   +   
Sbjct: 691 ISLSAGDEVVGMEVLEDDSQILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNITDKNGSL 750

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           + +      + V ++     L+  +++ I  M R  +GVRL    +     V    
Sbjct: 751 VSMKAVTGEEDVMLITTGGVLIRMAVNDISTMGRNTQGVRLIRINEDADEAVSTVA 806


>gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 894

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L L  NP+++I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVT+IPYQV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++  + ++T F +NM  L     P+++ L   L E+L H++
Sbjct: 302 VRVVIDVRKDANANVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKQALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++ +L   +     +  E+ ++KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T        D    L+  +  G       S      + GK  +    ++++  
Sbjct: 594 DNDETISTMIAVRNLEDEDSYLVFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V    G+   ++   +  L+ F+   +  + R   GVR  S ++  +   +     +   
Sbjct: 654 VRLTDGNQDILIGTSHASLIRFAETSLRPLGRTAAGVRGISLREDDVVVGLDVAHADSED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G    K   R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIV 755



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           DS  ++LVV+  G       SE   + R GK      +   +   + +      + + +V
Sbjct: 710 DSEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLMIV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRS 718
             +  ++   ++ I +  R  +GVRL    D      ++ VI     E  T        
Sbjct: 770 TNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTENG 828



 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA + D +L+++ +G     P          G+ I+       N +IV     +    L+
Sbjct: 708 HADSEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV---TGDHV---AVVGEN 667
           +V++ G    +E  +I  N R   G   +K+  ++ +  V KV   T D     A   EN
Sbjct: 768 IVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTEN 827

Query: 668 R 668
            
Sbjct: 828 G 828


>gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
 gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
          Length = 876

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/796 (30%), Positives = 387/796 (48%), Gaps = 63/796 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TPFAKETLPISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L++NP+  IE+L+  +  PDFPT   ++     + + YR GRG  
Sbjct: 182 IPPHNLGEVLDACLKLLENPDTDIEELIALVKAPDFPTAA-LIYGLSGVHDGYRTGRGRV 240

Query: 251 RVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++       I+V E+PYQV K  L+E+IAEL+  K+I  + +IRDES +  
Sbjct: 241 VMRARTHFEDLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ ++F  + ++  F +NM  L     P+ + L  +L  +L+HRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVD-GKPRTLNLKQMLDCFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII-----------------AIIRNEDK 412
           EV+ RR+ F ++    R  IL+GL +A  N+DEII                     +   
Sbjct: 360 EVITRRTVFELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSAL 419

Query: 413 PKPV--------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            + +                        + L++ Q  AIL LRL+ L  LE+ +I +E  
Sbjct: 420 VEEMLARALAASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++     +  +L +  +    I  E+  ++  F        RR+              +
Sbjct: 480 EVMDVITDLLDILANPPRITAIIVEELGAIRHQFDDP-----RRSEIV---LNTAEINIE 531

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+ +                  A   K+ D +     A+T D IL
Sbjct: 532 DLIAPEDMVVTLSHAGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYIL 591

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ G+ Y L    +        G  I  L  L   + I        +D    + + ++
Sbjct: 592 CFSSRGRVYWLKVYEVPEGTRNSRGRPIVNLFPLMEGEKINAVLPVQAFDDDHFVFMATA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           +G       +      + G     +   +++  V    G+  V +  +  K + F    +
Sbjct: 652 EGTVKKTALTAFSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R  +GVR  + ++G     +     E L+ + +    Y +           RG  G
Sbjct: 712 RPMGREARGVRGMNLEEGQRVIAMLVAKDEELSVLTATENGYGKRTPVAEYTRHGRGTKG 771

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK + +
Sbjct: 772 MIAIQTSDRNGKLVGA 787



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 7/179 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A +  +GD L           ++L S  GKA   P G++  
Sbjct: 654 TVKKTALTAFSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDVRP 713

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  ++ + +L   Q ++   V  D    +L  +  G       +E   + R  K  
Sbjct: 714 MGREARGVRGM-NLEEGQRVIAMLVAKDEELSVLTATENGYGKRTPVAEYTRHGRGTKGM 772

Query: 642 LKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           + + + ++   +     V   D V ++     L+   +  I E+ R  +GV L +  +G
Sbjct: 773 IAIQTSDRNGKLVGACLVEESDEVMLISTGGVLIRTRVQDIRELGRATQGVTLINLDEG 831



 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G     P           + +  +   + N  +V A + + + +++++S+ G     
Sbjct: 749 TENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGKLVGACLVEESDEVMLISTGGVLIRT 808

Query: 627 EESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              +I    R   G T + +     +  + KV    V
Sbjct: 809 RVQDIRELGRATQGVTLINLDEGTSLAGIEKVAESEV 845


>gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1]
 gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1]
          Length = 823

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 807

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/757 (32%), Positives = 402/757 (53%), Gaps = 18/757 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSEE----KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD 
Sbjct: 57  LTPDKPYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 117 PAAMRYTEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  
Sbjct: 177 GMATNIPPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES
Sbjct: 236 GRGKIVVRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++
Sbjct: 295 DRNGMKIVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F 
Sbjct: 354 DHQADVVTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+
Sbjct: 414 LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++                          +       +        ++ K     +  
Sbjct: 474 KDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +         +    +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  + +       + F+   I  M R  KGV   S ++     V    +      +   
Sbjct: 654 GEREIIIGTARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPNSEILVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +  +     L  R G G +  +   ++GK +S
Sbjct: 713 ENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+  G     
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPNSEILVVTENGFGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   +  I +M 
Sbjct: 721 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMH 780

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 781 RDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 2/140 (1%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +  N   IR +   +  + A+  +E D +      H    IL+++ +G            
Sbjct: 668 IRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEILVVTENGFGKRTDLEEYRL 727

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKT 640
               G+ I  +        +V+    +   + +++S+ G    ++ S+I    R  +G T
Sbjct: 728 QTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRDTRGVT 787

Query: 641 FLKVSSEEKMKLVVKVTGDH 660
            +K+   +++    ++  + 
Sbjct: 788 LMKLDDGDRVVSTARIENEE 807


>gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 807

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/757 (32%), Positives = 401/757 (52%), Gaps = 18/757 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSEE----KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD 
Sbjct: 57  LTPDKPYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 117 PAAMRYTEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  
Sbjct: 177 GMATNIPPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES
Sbjct: 236 GRGKIVVRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++
Sbjct: 295 DRNGMKIVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F 
Sbjct: 354 DHQADVVTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+
Sbjct: 414 LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++                          +       +        ++ K     +  
Sbjct: 474 KDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +         +    +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  + +       + F    I  M R  KGV   S ++     V    +      +   
Sbjct: 654 GEREIIIGTARGYAIRFDEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPNSEILVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +  +     L  R G G +  +   ++GK +S
Sbjct: 713 ENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+  G     
Sbjct: 662 TARGYAIRFDEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPNSEILVVTENGFGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   +  I +M 
Sbjct: 721 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMH 780

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 781 RDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+  +E D +      H    IL+++ +G                G+ I  +    
Sbjct: 683 KGVIAISLREDDEVVEMDLVHPNSEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE 742

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVK 655
               +V+    +   + +++S+ G    ++ S+I    R  +G T +K+   +++    +
Sbjct: 743 KTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTAR 802

Query: 656 VTGDH 660
           +  + 
Sbjct: 803 IENEE 807


>gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803]
 gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803]
          Length = 823

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KDRFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811



 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                ++  N   +RS+  ++  + A+   E D +           +L+++ +G     P
Sbjct: 666 TSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTP 725

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                     G+ ++     + N  +V          ++++++ G    +   +I    R
Sbjct: 726 VEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGR 785

Query: 637 K--GKTFLKVSSEEKMKLVVKVTGDH 660
              G   +++  E+++  V K   D 
Sbjct: 786 NTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH]
 gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH]
          Length = 816

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/749 (33%), Positives = 410/749 (54%), Gaps = 15/749 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  VS+   L + YL Y++S I  RA+PD+RDG KPVHRRI++AM +MG+  G+A+KKS
Sbjct: 2   QVIPVSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VY++LVR+AQPF  R PLI GQGNFG+IDGD+AAA RYTEAR
Sbjct: 62  ARIVGDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEAR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +L+ +D+D VDF   Y+  + EPVV P++FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 122 LTKIAEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +A + +IDN + ++E +L+++ GPDFPTGG I   +  I+E+Y+ GRG  ++RA+
Sbjct: 182 LEELIDALIYMIDNKDATLEDILQFVKGPDFPTGGTIF-GKSGIIEAYKTGRGSIKIRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + E       IV+ E+P+QV K++LIEKI++L+  K +  + ++RDES  +   V+  
Sbjct: 241 HHI-EHKGNKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +    ++++ +++  + M+  F +NM  +   + P++  L  +L  ++ HR+ V+ RR
Sbjct: 300 LKKDAMSEIILNNLYKHTQMQVSFGINMLGIYD-KQPKLFNLFELLDIFIKHRKTVVIRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + + ++   +R  IL+GLLIA  NIDE++ II+  +     K  +++RF LT+ Q  AIL
Sbjct: 359 TIYELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINRFELTDVQAQAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  ++++E   L+ + E ++S+L         I  E+ E+K+ +      
Sbjct: 419 DMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKDELLEIKKKYPTPRLT 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                             +  +       V                   AL   E D ++
Sbjct: 479 NIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNRGGKGKKALTIYEDDFIE 538

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---V 607
               A++ D +++++  G+ + L    +        G+AI  LI+L+ ++ I T      
Sbjct: 539 DFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKGKAIVNLINLDKDEKIQTIIKTED 598

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVG 665
           +D +  L   +  G       SE       G   + +   +++     V      + +V 
Sbjct: 599 FDESKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAITIDEGDELVTAKIVEPGDKELFIVT 658

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           +    + F +D + EM R  +GV    +K +G           E    +  + + + +  
Sbjct: 659 KKGMAIRFPVDTVREMGRTARGVTGIRFKIEGDEVVGALALQDENQEILTLSEKGFGKRT 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              L  L  RGG G +  K   ++G  + 
Sbjct: 719 EANLYRLTNRGGKGVIAMKLTNKTGDLVG 747



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 67/467 (14%), Positives = 149/467 (31%), Gaps = 29/467 (6%)

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS-LDPDLLM 326
           I +      V +  + E       A  +  L  +   +  D  + +  K+    +    +
Sbjct: 346 IFIKHRKTVVIRRTIYELEEAKKRAHILEGL--LIALANIDEVVEIIKKSNDTKEAKENL 403

Query: 327 ESIFMLSDMETR--FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
            + F L+D++ +    + +  L+   V ++      L E + +   +L   +       D
Sbjct: 404 INRFELTDVQAQAILDMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKD 463

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +EI K      L    I       D    +      +T      +  + L++  +   
Sbjct: 464 ELLEIKKKYPTPRL--TNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNR 521

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-----EIREVKEIFSKSTDLGRRRTTF 499
                +   +  +    D  + +       I        ++  +      T  G+     
Sbjct: 522 GGKGKKALTIYEDDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKGKAIVNL 581

Query: 500 C--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +     +  ++    ++       +  G ++              + A+   EGD L
Sbjct: 582 INLDKDEKIQTIIKTEDFDESKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAITIDEGDEL 641

Query: 552 KIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-D 609
             A      D+ + +++  G A   P   +         +  +       ++V A    D
Sbjct: 642 VTAKIVEPGDKELFIVTKKGMAIRFPVDTVREMGRTARGVTGIRFKIEGDEVVGALALQD 701

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKV--SSEEKMKLVVKVTGDH-VAVV 664
              ++L +S KG     E +      R GK    +K+   + + +  VV    DH + V+
Sbjct: 702 ENQEILTLSEKGFGKRTEANLYRLTNRGGKGVIAMKLTNKTGD-LVGVVATEKDHDLMVL 760

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             + K++  SID I +  +  +GVR+    DG     +     E   
Sbjct: 761 TSSGKMIRVSIDSISKTGKNTQGVRVVKLDDGDKVVSLAKTPSEKEE 807


>gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13]
 gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13]
          Length = 855

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/788 (31%), Positives = 398/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD + YD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  +L  +D+D VDF   Y+  ++EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 ISHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATNIPPHNLTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A + ++DNP ISI++LL +I GPDFPT G I+     I E YR GRG   +RAR   
Sbjct: 190 VINACVEILDNPNISIDELLNFIPGPDFPTAG-IIHGNSGIKEGYRTGRGRVVMRARTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE  +G    I++ E+PYQV K  L+EKIAEL+  K++  + D+RDES +    V+    
Sbjct: 249 EETDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + ++  F +NM  L     P+++ L  +L  +L HRREV+ RR+ 
Sbjct: 309 RGEIPDVVLNNLYKQTQLQDSFGINMVALID-GQPKLLNLKQVLDAFLNHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  N+DE+I II++   P                        
Sbjct: 368 FELRKARERGHILEGLAVALENVDEMIKIIKSSPSPVEAKTELMQREWKSSVVSSMLKQG 427

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 428 DATQYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEIMDVIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LN   +  + I  E+ E+KE +        RR+   E +        + +I  + +
Sbjct: 488 LIDILNKPDRVTSIIKTELEEIKETYGD-----DRRSEIVENAED---LSIEDLIAPQDM 539

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+         R+ K       A   K+ D +     A++ D IL  S+ G+ 
Sbjct: 540 VVTLSHTGYIKAQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQV 599

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVE 627
           Y L    +        G+ I  L  L   + I              + + ++KG      
Sbjct: 600 YWLKVYEVPQGSRVSRGKPIVNLFPLMPGEKINAILTVKEFVDNEYIFMATAKGTVKKTP 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     + G   +K+ + + +       G+  + +V  + K + F    +  M R  +
Sbjct: 660 LSDFSNPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSMGRNAR 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR     DGG    +     E  + + +    Y +           RG  G    +   
Sbjct: 720 GVRGMKLTDGGEVLSLLIAENEAQSVMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSD 779

Query: 746 RSGKFLSS 753
           R+G+ + +
Sbjct: 780 RNGQVVGA 787



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 5/168 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+    GD L  A      + I+L+S  GKA      ++ S   +   ++ +
Sbjct: 665 NPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSMGRNARGVRGM 724

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
              +  + +      +    ++V +  G       SE   + R   G   ++VS    ++
Sbjct: 725 KLTDGGEVLSLLIAENEAQSVMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSDRNGQV 784

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
                V   D + ++     L+   + +I E+ R  +GV L +  D  
Sbjct: 785 VGAKLVGDHDELMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDDE 832


>gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
 gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
          Length = 823

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264]
 gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
 gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264]
 gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
          Length = 823

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   ++      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVA 805


>gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
 gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
          Length = 824

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/752 (31%), Positives = 407/752 (54%), Gaps = 23/752 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++ M EMGL       KS
Sbjct: 10  NMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+V+GK HPHGD ++YDSLVR+AQPF  RYPL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 70  AKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A  +L+ +D++ VDF+  Y++ +SEP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 LSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI  A + LI +P  ++ K++E++ GPDFPTGG I+  R+ I++++  GRG  ++RA+
Sbjct: 190 LTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFIL-GRQGILDAFIRGRGQLKLRAK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++G+    I+VTEIPYQV KSRLIE  + L+  K++  + DIRDES  D   ++F 
Sbjct: 249 AAIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVFE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F + M  +     P+ + L  ++K ++ HR EV+ RR
Sbjct: 309 LKRGEQAEVILNNLYKHTQLQVGFGIIMLSIV-NGQPRELGLVDMIKHFIDHRIEVVRRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++    R  IL G   A  ++DE+I +IR        +  +++ F  ++ Q  AI+
Sbjct: 368 TEYELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLITTFQFSDKQAQAII 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L+ L  +E  +I  EL  +     +   +L S K   + I  E++EV++ +      
Sbjct: 428 ELQLQRLTGMERQKILDELGEIQRRIAEYVEILGSDKVLRDLIIKELKEVQKNYGDE--- 484

Query: 493 GRRRTTFCEVSRADK-----ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
             RRT   E +   +     A    A+       +  ++    R           +  + 
Sbjct: 485 --RRTQIIEDTGEIRLEDLVAVEDVAITVTRGGYLKRTSVDTYRRQTRGGKGRIGMGTRA 542

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQD---I 602
            D ++  + A T   +L+ +T G+ Y L A  +        G+ +  LI+L  +++    
Sbjct: 543 EDFVERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTIGKGKHLTNLINLQGDEEAKAF 602

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
           ++   + +   +++V+  G     E +E      +G   + +   +++       GD ++
Sbjct: 603 LSVKDFVANQYIVMVTKHGVIKKSELTEFDNPLSRGIIAVSLDEGDELIGAKITMGDNYI 662

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +     + + F  + +  M R  +GVR  S  DG     +     +GL  +  A   Y 
Sbjct: 663 FLGSHEGQAIRFREEDVRAMGRQARGVRAMSLADGDYLVGMEVVEKDGL-ILSIAENGYG 721

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        L  RGG G +  K   ++G+ + 
Sbjct: 722 KRTPLEDYRLTSRGGKGVINMKTTNKTGRVVG 753



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 6/191 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           VI            S  + A+   EGD L  A      + I L S +G+A      ++ +
Sbjct: 622 VIKKSELTEFDNPLSRGIIAVSLDEGDELIGAKITMGDNYIFLGSHEGQAIRFREEDVRA 681

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++  + L     +V   V +    +L ++  G        +    +R GK  +
Sbjct: 682 MGRQARGVR-AMSLADGDYLVGMEVVEKDGLILSIAENGYGKRTPLEDYRLTSRGGKGVI 740

Query: 643 KVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +       ++  ++ V  D  + +V +N K++      I +  R  +GVRL + +    
Sbjct: 741 NMKTTNKTGRVVGILSVKEDSELMIVSQNGKMIRIESSTIRQAGRSTQGVRLVNLEPDDK 800

Query: 698 SDVICFKICEG 708
                      
Sbjct: 801 VAAASVIPESD 811



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 2/148 (1%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      +R++   +  + A+   +GD L           IL ++ +G     P
Sbjct: 666 SHEGQAIRFREEDVRAMGRQARGVRAMSLADGDYLVGMEVVEKDGLILSIAENGYGKRTP 725

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +       G+ +  +   N    +V         +L++VS  G    +E S I    R
Sbjct: 726 LEDYRLTSRGGKGVINMKTTNKTGRVVGILSVKEDSELMIVSQNGKMIRIESSTIRQAGR 785

Query: 637 K--GKTFLKVSSEEKMKLVVKVTGDHVA 662
              G   + +  ++K+     +    V 
Sbjct: 786 STQGVRLVNLEPDDKVAAASVIPESDVV 813


>gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 892

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 406/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   EYPESRIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLATELLRDINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMTEVINGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVV+EIP+QV K+R+IEKIAEL   K++  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++ L+ ++T F +NM  L     P+++ L   L E+L H++
Sbjct: 302 VRVVIDIRKDANASVILNNLYKLTPLQTSFGVNMIALI-NGRPKLINLKEALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
            V+ RR+ + ++  + R  IL+GL IA  +IDEII+ IR  +   +    +  RF L+E 
Sbjct: 361 VVVRRRTEYNLKKAEDRAHILEGLRIALDHIDEIISTIRESETDKEAMERLQGRFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + L+A  E++ ++L   ++    +  E+ EV+E F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELIAYIEELRAILADEEKLLELVREELTEVRERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRSEI--QLGGLDQIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQIVTMSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T    +        L+  +  G       S      R GK  +    E+++  
Sbjct: 594 ENDESISTMIAVNDLEKEDAYLVFATKNGIVKRSSLSNFSHINRNGKIAINFRDEDELVA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V    G   V +   +  L+ F   ++  + R   GV+  + ++G  +  +         
Sbjct: 654 VRLTDGTKDVLLGTSHASLIRFKESKLRPLGRTAAGVKGITLREGDELVGLAVATEDSED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        +  RGG G        ++G  +
Sbjct: 714 EVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKNGDIV 755



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 589 AIQLLIDLNHNQDIV--TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L    ++V       DS  ++LVV+  G       +E   + R GK      +
Sbjct: 688 AGVKGITLREGDELVGLAVATEDSEDEVLVVTENGYGKRTPLNEYRISNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
              + + + +      + + +V     ++   +D I +  R  +GVRL    +      +
Sbjct: 748 TEKNGDIVCITTVTGEEDIMIVTNQGVIIRIDVDDISQNGRAAQGVRLIRLGEEQFVSTV 807

Query: 702 CFKICE 707
                +
Sbjct: 808 AKVQED 813



 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +L+++ +G     P          G+ I+       N DIV          +++V+++
Sbjct: 713 DEVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKNGDIVCITTVTGEEDIMIVTNQ 772

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           G    ++  +I  N R   G   +++  E+ +  V KV  D
Sbjct: 773 GVIIRIDVDDISQNGRAAQGVRLIRLGEEQFVSTVAKVQED 813


>gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
 gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
          Length = 823

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/765 (33%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +A   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 LISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D L           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
 gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
          Length = 822

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
 gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
          Length = 823

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
 gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
          Length = 833

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/756 (32%), Positives = 409/756 (54%), Gaps = 28/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + VK  ++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+++M+++G+     +KK
Sbjct: 5   DQVKPHNIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VI K HPHGD SVYD++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTEA
Sbjct: 65  SARIVGDVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +++ ++++ +DF+  ++ E+ EPVV P++FP+LL NGT+GIAVGMAT+IP H
Sbjct: 125 RMSKLAMEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A LA ++NPEI +  L+E+I GPD PTG  ++   + I  +Y  G G   +R+
Sbjct: 185 NLTEVINACLAYMENPEIDVLGLMEHIKGPDLPTGA-LILGTKGIRNAYETGNGSIMMRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E   G + I+VTEIPYQV + RLIEKIAEL+  KR+  + D+R+ES  +   ++ 
Sbjct: 244 KCEIIEGHGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++P +++ ++F L+ ++  + +NM  L     P+V+ L  I+  ++ H+ EV+ R
Sbjct: 304 ELRKDVNPQVMLNNLFKLTQLQVSYGINMLALQD-GQPKVLNLKEIIAAYIKHQVEVIVR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+G  IA  +ID IIAIIR     +     ++S FS +E Q  AI
Sbjct: 363 RTQFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEALNNLISEFSFSERQGKAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L  LE  +I+ E  NL+     +  +L +  +    I  E+ EV         
Sbjct: 423 LEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILANEYRVHGIIRDELTEVMIKHGD--- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT       +D     + +I +E + + ++N G+I+     +          +  +
Sbjct: 480 --DRRTEIV--RGSDFDIEDEDLIPEEQVIITLTNNGYIKRQPISTYRSQNRGGRGVQGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQD 601
              + D +K  L   T D +L  +  GK Y   A  +       +   I  +I++  +++
Sbjct: 536 GTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRTAKGLPIVNIIEIAQDEE 595

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I        ++    L   +  G       S        G   L +  ++++  V K TG
Sbjct: 596 ISAIIPVKEFNENEFLFFATRTGVVKRTTLSAFGNIRTNGLIALSLREDDELIGVRKTTG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + + +     KL+ F  DQ+  M R   GVR  + ++G ++  +   + E    +  + 
Sbjct: 656 SNDIVIASSGGKLVWFEEDQVRSMGRTAAGVRGINLEEGEVAVGMEI-VTEDQEILIVSE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +           RGG G        ++G  ++
Sbjct: 715 KGFGKRTPISEYRKTSRGGKGVKTINITDKNGSLVA 750



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 67/467 (14%), Positives = 135/467 (28%), Gaps = 32/467 (6%)

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               I+   I +QV+      +        R  +LE  R       RI+   +  S D +
Sbjct: 344 NLKEIIAAYIKHQVEVIVRRTQFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEE 403

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            L   I      E  F        +    + +      K    ++  V        + A 
Sbjct: 404 ALNNLI-----SEFSFSERQGKAILEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILAN 458

Query: 384 DRRVE-------ILKGLLIAYLNIDEIIAIIRNEDKPKP-VMVSRFSLTENQVDAILNLR 435
           + RV            +        EI+     + + +  +   +  +T      I    
Sbjct: 459 EYRVHGIIRDELTEVMIKHGDDRRTEIVRGSDFDIEDEDLIPEEQVIITLTNNGYIKRQP 518

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           + + R         +      +    + L  S          + +  ++      + GR 
Sbjct: 519 ISTYRSQNRGGRGVQGMGTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRT 578

Query: 496 -------RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF--- 545
                              A +      +       +  G ++     +      +    
Sbjct: 579 AKGLPIVNIIEIAQDEEISAIIPVKEFNENEFLFFATRTGVVKRTTLSAFGNIRTNGLIA 638

Query: 546 ---KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
              +E D L        ++ I++ S+ GK       + +   G   A    I+L   +  
Sbjct: 639 LSLREDDELIGVRKTTGSNDIVIASSGGKLVWFE-EDQVRSMGRTAAGVRGINLEEGEVA 697

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD 659
           V   +     ++L+VS KG       SE    +R GK    ++  +K   +  +  VTG+
Sbjct: 698 VGMEIVTEDQEILIVSEKGFGKRTPISEYRKTSRGGKGVKTINITDKNGSLVAMKTVTGE 757

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFK 704
             + +V     ++   I QI +  R  +GV L    D      +   
Sbjct: 758 EDLLIVTNKGIIIRTPISQISQTGRATQGVTLIRLTDDQFVSSVALV 804


>gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 880

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/792 (33%), Positives = 397/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL+ L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F  +                  A
Sbjct: 475 DEYKQLLEEIAELMHILASTERLMEVIREELEAVRDGFGDARRTEITAAIHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L        G+ I  ++ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRLKVYQLPQASRTARGKPIVNILPLEENERITAILPVSEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLREDDSLIGVDITDGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGSVVGA 785


>gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
 gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
          Length = 921

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/783 (33%), Positives = 389/783 (49%), Gaps = 48/783 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKS
Sbjct: 48  EITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 107

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 108 ARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 167

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 168 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 227

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LA ID+  ISIE L+E+I GPDFPT   I+  R  I E+YR GRG   +RAR
Sbjct: 228 LSEVISGCLAYIDDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRAR 286

Query: 256 WCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++ 
Sbjct: 287 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVV 346

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ ++ HRREV+ R
Sbjct: 347 EVKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-HQGQPKLLNLKDILQAFVRHRREVVTR 405

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  IL+ L IA  NID II +IR    P                     
Sbjct: 406 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAML 465

Query: 416 ------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                             +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 466 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNF 525

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V++ F           +               +   
Sbjct: 526 IAELIFILQSPDRLMEVIREELEAVRDQFGDQRRTEITANSSDINIEDLINQEDVVVTLS 585

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V         + +      SA   KE D +   L A+T D IL  S+ G+ Y +  
Sbjct: 586 HQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 645

Query: 578 GNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L        G  I  L+ L  ++ I        Y+    + + ++ G       +E  
Sbjct: 646 YQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHVFMATASGTVKKTALTEFS 705

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   + ++  +++  V    G + V +   N K++ F   Q+  M R   GVR  
Sbjct: 706 RPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPESQVRSMGRTATGVRGI 765

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  +G     +     EG   +      Y +           R   G +  K   R+G+ 
Sbjct: 766 NLGEGDSVISLIVPRGEGD-ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERNGQV 824

Query: 751 LSS 753
           + +
Sbjct: 825 VGA 827


>gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273]
 gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273]
          Length = 823

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 418/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR           ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 LISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D L           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 816

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 GLT 710
              
Sbjct: 811 EEE 813


>gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
 gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
          Length = 856

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/784 (32%), Positives = 397/784 (50%), Gaps = 50/784 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+   +KKS
Sbjct: 7   EILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG+IDGDS AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D++ VDF D Y+  + EP V P++ PNLL NG SGIAVGMAT+IP HN
Sbjct: 127 MARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +A +AL+D+PE+ +E L+EY+  PD PTGG I+     I +++R GRG   +RAR
Sbjct: 187 LREVIDACVALVDDPELPVESLIEYVPAPDLPTGG-IIFGTAGIHQAFRTGRGRMVLRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE+      IVVTE+PYQV K+RL+EKIAEL+  +R+  + ++RDES ++   ++  
Sbjct: 246 AEVEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGIRIVLE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+T F +N+  L     P+ + L  +L+ ++ HRREV+ RR
Sbjct: 306 LKRGEAGEIVLNNLYRHTQMQTVFGINVVAL-HEGQPRTLNLRQVLEAFIRHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + ++    R  +L+GL +A  NIDE+IA+I+    P                      
Sbjct: 365 TIYELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGVVTEMLE 424

Query: 420 -----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL+LRL  L  +E+ +I  E  NLL 
Sbjct: 425 RAGAAATRPEDLADHFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEEYSNLLE 484

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L+SG++    I  E+  +++ +        R  T         +     +  
Sbjct: 485 RIAELIHILDSGERLMEVIREELVAIRDQYGDERKTEIREDTAELSLEDLISEEDMVVTL 544

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                V        R+ +      SA   K+ D +     A+T D +L  S+ GK Y   
Sbjct: 545 SHHGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHDTLLCFSSTGKCYWRK 604

Query: 577 AGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
              L        G  +  L+ L  ++ I        +D    + + +  G       S  
Sbjct: 605 VYELPQGSRTSRGRPMVNLLPLEEDERINAVVPVREFDEDHFVFMATRNGTVKKTPLSHF 664

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
                 G   +++  ++ +       GD  V ++ +  K L F    +  M R   GVR 
Sbjct: 665 SRPRSSGIIAVELRGDDTLVDAEITNGDREVMLLSDAGKALRFHESDVRAMGRTAGGVRG 724

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              + G    VI   I      + +    Y +           RGG+G +  +   R+G+
Sbjct: 725 IRLESGQR--VIALLILGEGDILTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERNGR 782

Query: 750 FLSS 753
            + +
Sbjct: 783 VVGA 786



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
           I L   Q ++   +      +L  +  G        +     R G   + + + E+    
Sbjct: 725 IRLESGQRVIALLIL-GEGDILTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERNGRV 783

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +  V     D + +V  +  L+   +  +  + R  +GV+L S  +     ++  +  EG
Sbjct: 784 VGAVQAAEDDEIMLVSRSGTLVRTPVADVSRVGRNTQGVKLISLDEAE--QLVGLERVEG 841

Query: 709 L 709
           L
Sbjct: 842 L 842


>gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4]
 gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603]
 gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603]
          Length = 823

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/765 (33%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +A   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 LISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D L           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 823

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
 gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
          Length = 824

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 2   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 60  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 120 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 180 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAG-LILGRSGIRRAYET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 239 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 299 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 358 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 418 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 478 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 530

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 531 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 590

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 591 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDE 650

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 651 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 710 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 754



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 634 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 693 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 751

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   ++      + 
Sbjct: 752 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVA 806


>gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
 gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 395/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++  T     +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G
Sbjct: 1   MTDLAT----EITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMDRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  L LIDN   +I++L+E I GPDFPTGG I+  R+ I E+YR 
Sbjct: 177 GMATNIPPHNLTEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGG-IINGRKGIFEAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES
Sbjct: 236 GRGKIYVRAKTEVETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R   P++++ +++  + M+T F +NM  L     P++  L  +L+ ++
Sbjct: 296 DKDGMRIVIELKRGEVPEVVLNNLYAQTQMQTVFGMNMVAL-ANGQPKIFNLKEMLEAFI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  IL+GL IA  NID II +IR    P            
Sbjct: 355 RHRREVVTRRTVYELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LT  Q  AIL+LRL+ L  LE   I 
Sbjct: 415 DLGNVAGMLEKAGDDAARPEWLTPEYGIRDGKYYLTLEQAKAILDLRLQKLTGLEHEAIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E  +LL +  ++  +L S ++    I  E+  VK  +           +          
Sbjct: 475 DEYKSLLEQIAELLHILGSTERLMEVIREELEAVKTQYGDERMTEISAASADISMEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y +    L   S    G  I  L+ L   + I      +       +L  ++KG  
Sbjct: 595 IGKVYWMRVFQLPLASRTARGRPIVNLLPLGEGERITAILPVEEYSADKFILFATAKGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +        G   + ++ ++++  V    G + V +  +  K++ F+ DQ+  M 
Sbjct: 655 KKTALNAYSRPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR  +  +G    V      E    +      + +           R   G +  
Sbjct: 715 RTATGVRGINL-EGSDRVVSLIVPDEDGAILTVTENGFGKRTPQQEYPTKSRATKGVISI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGLVVGA 785



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 104/358 (29%), Gaps = 22/358 (6%)

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             +  E +   S+         +   + +++   +        +     +         +
Sbjct: 510 TQYGDERMTEISAASADISMEDLITQEDVVVTLSHQG--YVKYQPLTDYEAQRRGGKGKS 567

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             ++     +    +    +  +       +         L S   +   I   +     
Sbjct: 568 ATKMKDEDFIERLLVANTHDTILCFSSIGKVYWMRVFQLPLASRTARGRPIVNLL----- 622

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                   G R T        + +  +  +      TV  +           S  + A++
Sbjct: 623 ----PLGEGERITAIL--PVEEYSADKFILFATAKGTVKKTALNAYSR--PLSSGIRAIN 674

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
             + D L         + ++L S  GK        + +       ++  I+L  +  +V+
Sbjct: 675 LADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAMGRTATGVRG-INLEGSDRVVS 733

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK--LVVKVTGDH 660
             V D    +L V+  G      + E    +R  KG   +KVS    +    V     D 
Sbjct: 734 LIVPDEDGAILTVTENGFGKRTPQQEYPTKSRATKGVISIKVSERNGLVVGAVQVGENDE 793

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
           + ++     L+   + ++ E+ R  +GVRL    +G  +  +      E    +    
Sbjct: 794 IMLITNRGTLVRTRVSEVSEVGRNTQGVRLIRTAEGEQVVGLERIDEVEVDESLLEGE 851


>gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius]
          Length = 882

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/762 (34%), Positives = 416/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIA+L+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  D        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GDE-----RRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GVQGMNTLEDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V    GD H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VRLTDGDKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNKD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGDK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D   K  +LVV+ 
Sbjct: 662 HILIGTAQASLIRFKETDVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNKDEILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    D      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDDEQYVSTVAKVKKEPEDL 817



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 52/378 (13%), Positives = 109/378 (28%), Gaps = 29/378 (7%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           EK+ EL+  +   + E   DE   ++++    +    D     + +  LS       L  
Sbjct: 463 EKLLELVREELTEIKEKFGDERRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPA 522

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
           +            + G+         +++   +       D  +       +  L   E+
Sbjct: 523 STYRAQNR-GGRGVQGMNTLEDDFVSQLVTTSTH------DHVLFFTNKGRVYKLKGYEV 575

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
             + R       V        E     I    L S      +  K  L    A       
Sbjct: 576 PELSRQSKGIPIVNAIELDQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNF--- 632

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
              +   +  +IA + R+  E+ +     G +         +     +  +       + 
Sbjct: 633 ---NRINRNGKIAIKFRDDDELIAVRLTDGDKHILIGTAQASLIRFKETDVRAMS--RIA 687

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
              +G         + L                    D IL+++  G        +    
Sbjct: 688 AGVKGIRLRDGDEVIGLDVADDDN------------KDEILVVTEKGYGKRTSIEDYRLS 735

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTF 641
              G  ++       N  +V     +    L+VV+++G    +E S I  N R  +G   
Sbjct: 736 NRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRL 795

Query: 642 LKVSSEEKMKLVVKVTGD 659
           +++  E+ +  V KV  +
Sbjct: 796 IRLDDEQYVSTVAKVKKE 813


>gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
 gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822]
          Length = 893

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/791 (31%), Positives = 391/791 (49%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NPE SI++L+E I  PDFPTGG ++     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPECSIDELIELIPAPDFPTGG-VIYGITGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  +++ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQLIEYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARV 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           ++A    +  +L   ++    I+ E++ +K  FS S    RR        E+   D  T 
Sbjct: 488 VMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 MDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + +        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  +  K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    ++G     +     E  + + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 788 TSSRNGRVVGA 798



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
           +       I      D T  +L  +  G       +E   + R  K  + +   S   ++
Sbjct: 736 MLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRV 795

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
              V V   D + ++     L+   + +I EM R  +GV L S  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDG 842


>gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
 gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
          Length = 890

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ F    +  + R   GV+  + ++G +   +     E   
Sbjct: 654 VRLTTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKGITLREGDVVVGLDVAHAESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           +S  ++LVV+  G        E   + R GK      +   +   + +      + + VV
Sbjct: 710 ESEDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
                ++   ++ I +  R  +GVRL    +G     +     E  
Sbjct: 770 TNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEED 815


>gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804]
 gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii]
          Length = 885

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/795 (31%), Positives = 395/795 (49%), Gaps = 66/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMRYTEVRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NPE S+++L+E I  PDFPTGG I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPECSVDELIELIPAPDFPTGG-IIYGMSGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQLIHYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMSRAWDSSLVREMLSRA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DLDAVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I  E++ +K  FS      RR     E+         + 
Sbjct: 488 VMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRS----EIEFNATELDTED 543

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+         RS K       A   KE D +     A+T + +L 
Sbjct: 544 LITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYLLC 603

Query: 566 LSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +        G  I  +  L   + I        +     + + +S+
Sbjct: 604 FSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFSEDNYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 664 GTVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVR 723

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR  + +DG     +     E  + + +    Y +  +        RG  G 
Sbjct: 724 PMGRNARGVRGMTLEDGQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGM 783

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+GK + +
Sbjct: 784 IAIQTSSRNGKVVGA 798



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   EGD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEK 649
              +    I      D +  +L  +  G       +E   + R  K  + +     + + 
Sbjct: 736 TLEDGQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIAIQTSSRNGKV 795

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           +  V+ +  D + ++     L+   + +I EM R  +GV L S  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDG 842


>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY]
 gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A
 gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis]
 gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis]
 gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195]
          Length = 821

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/765 (32%), Positives = 419/765 (54%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLTLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +IE+E I V +++ G+++          K
Sbjct: 476 KERFNDE-----RRTEIV--TSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +++   L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  +   +   + E
Sbjct: 649 LMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    + Y +           RGG G    K    +G+ ++
Sbjct: 708 ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVA 752



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L        T +I++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  +V   + +    +L+V+ KG        E    +R GK         +  ++
Sbjct: 691 ITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V    G+  + ++  +  L+   I+ I    R  +GVRL    +      +   
Sbjct: 751 VAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 820

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/754 (33%), Positives = 399/754 (52%), Gaps = 24/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++++ E+GL     F+KS
Sbjct: 7   KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+   HPHGD ++YDS+VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEAR
Sbjct: 67  AGIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ VDF   Y+    EPV+ P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +IDNP ++ ++L++ I GPDFPTG  I   R+ I  +YR GRG  ++RA+
Sbjct: 187 IGEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKI-MGRDGIRAAYRTGRGSIKIRAQ 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V EIP+QV K++L+EKIAEL+  K+I  + D+RDES      ++  
Sbjct: 246 ATIETKNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P++++  ++  + M+  F + M  L     P+V+ L  +L  +L H+++V+ RR
Sbjct: 306 LKKDANPNVILNQLYKFTQMQESFGIIMLALV-NNQPKVLNLAQVLFYYLEHQKDVITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           + + ++  + R  I++GL IA  ++DE+I IIR     +       + F+LTE Q +AI+
Sbjct: 365 TKYELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVTNFNLTEVQAEAIV 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLRSL  LE  +++ E  +LLA+ + + S+L   K+    I  E+ EVK+ F+     
Sbjct: 425 EMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADEKKVLGIIKDELTEVKKKFADP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT     +  D         E           +   +    RS +     ++A+  K
Sbjct: 482 --RRTVISNEAAGDFDIEDLIDEEGMVVTITNQGYIKRISLDTYRSQRRGGKGITAMGTK 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D +K    A T   +L  +  GKAY L    +       +   +  L+ ++  + + T
Sbjct: 540 EEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEIPEAGRTAKGTPLVNLLYISSGEYVTT 599

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                 +     L + + +G       SE   + R G   + +   +++  V    G + 
Sbjct: 600 VIPIKDFTEEAYLFMATKQGVVKKTNLSEYDTSRRDGINAINLDESDELVAVELTHGREE 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +       + F  + +  M R  +GV+  +   G  S V    + +G   +      Y
Sbjct: 660 IILSTREGMAIRFPEEDVRPMGRTARGVKGITL-TGDDSVVNMDVVKDGGDLLVVTANGY 718

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  N        RGG G +  K  PR+G  + +
Sbjct: 719 GKRTNLDEYRTQTRGGKGIINIKTSPRNGPVVGA 752



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 6/200 (3%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
              ++A +       V+          S    ++A++  E D L      H  + I+L +
Sbjct: 605 DFTEEAYLFMATKQGVVKKTNLSEYDTSRRDGINAINLDESDELVAVELTHGREEIILST 664

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G A   P  ++         +   I L  +  +V   V      LLVV++ G      
Sbjct: 665 REGMAIRFPEEDVRPMGRTARGV-KGITLTGDDSVVNMDVVKDGGDLLVVTANGYGKRTN 723

Query: 628 ESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E    TR GK  + +     +   +  +V    D + ++     ++  +   +    R
Sbjct: 724 LDEYRTQTRGGKGIINIKTSPRNGPVVGALVVKDDDEIMMISAEGIMIRLAAKDVSTFGR 783

Query: 684 -GKGVRLQSYKDGGISDVIC 702
             +GV L    +      + 
Sbjct: 784 NTQGVTLMKVAENDHIVAVA 803


>gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W]
 gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W]
          Length = 823

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 823

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens]
          Length = 880

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/793 (33%), Positives = 396/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLAEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYLRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYALTQLQVTFGINMVAL-HQGQPKLLNLKDILEAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVSAMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L S ++    I  E+  VKE+++          T         
Sbjct: 475 LDEYKELLNFIAELIFILESPERLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +   N K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +  +G     +     EG   +      + +           R   G + 
Sbjct: 715 GRTATGVRGINLGEGDSVISLIVPRGEGD-ILTVTQNGFGKRTAVTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G+ + +
Sbjct: 774 IKVSERNGQVVGA 786


>gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 849

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/788 (31%), Positives = 399/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 11  PVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARI 70

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 71  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEIRMAK 130

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP+VFP++FPNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 131 IAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTE 190

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+ NP++ IE+L+E +  PDFPT G  +     + E YR GRG   +RAR   
Sbjct: 191 VVDACLALLKNPDMDIEQLIELVPAPDFPTAG-FIYGLAGVKEGYRTGRGRVVMRARTHF 249

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++G+G    I++ E+PYQV K+ L+ KI E++  KRI  + +IRDES +     +    
Sbjct: 250 EDIGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSGMRAVIELK 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + D+++  ++  + M+  F +NM  +     P++  L  +++ +L HRREV+ RR+ 
Sbjct: 310 RGENADVILNQLYKDTQMQDSFGINMVAIVD-GQPKLCNLKDVIEAFLRHRREVVTRRTI 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  N+DEIIA+I+    P        +               
Sbjct: 369 FELRKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLVEDMLSRV 428

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q  AIL LRL+ L  LE+ +I  E   ++ +   
Sbjct: 429 DEASRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDKITD 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L    +    I  E+  ++  F       +RR+     ++       + +I  E +
Sbjct: 489 LLDILAKPARVTQIIGDELITIRSQFGD-----KRRSEIVTHTQDMS---MEDLIAPEDV 540

Query: 521 TVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G++++ K               A   KE D +     A+T D IL  S  G+ 
Sbjct: 541 VVTMSHGGYMKAQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSNRGRV 600

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L   ++        G+ I  L+ L   + I        +     +   +S+G      
Sbjct: 601 YWLKVYDVPQGTRISRGKPIVNLLPLEAGEKINAILPVKQFAEDQFIFFATSEGTVKKTP 660

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     + G   + +   + +  V    G H V +  +  + + F  D +  M R  +
Sbjct: 661 LSDFANPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGMGRTAR 720

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR  +   GG    +     E  + + +    Y +           RG  G +  +   
Sbjct: 721 GVRGMNLAKGGKVIALLVAENEEQSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSE 780

Query: 746 RSGKFLSS 753
           R+GK +++
Sbjct: 781 RNGKVVAA 788



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 5/168 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   EGD L           ++L S +G+A      ++         ++ +
Sbjct: 666 NPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGMGRTARGVRGM 725

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
                 + I      +    +L  +  G       SE   + R   G   ++ S    K+
Sbjct: 726 NLAKGGKVIALLVAENEEQSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSERNGKV 785

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
                V   D + ++G +  L+   +++I EM R  +GV L +  +G 
Sbjct: 786 VAATLVKPEDEIMLIGTSGVLIRTRVNEIREMGRATQGVTLMNVGEGE 833


>gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313]
          Length = 827

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/769 (32%), Positives = 414/769 (53%), Gaps = 32/769 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  + ++ +  V++   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++AM  +G
Sbjct: 1   MSDTKDVKQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAMYGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A++K A  VGEV+GK HPHGD +VYDSLVR+AQ F  RY  I G GNFG+IDGD 
Sbjct: 61  FTPDKAYRKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+++++  +L+ +++D VDF+  ++E   EPVV PS+FPNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  + +ID+P +++++L++ I GPDFPT GIIV  ++ I ++Y  
Sbjct: 181 GMATNIPPHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIV-GKQGIRDAYAT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA   +E++      IVVTE+PYQV K++LIE+IAEL+  KRI  + D+RDES
Sbjct: 240 GKGKIIVRAVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGIL 361
            +D   ++    +  + ++++  ++  + M+  F +NM  L +       P+V+ L   +
Sbjct: 300 DKDGMRIVIELKKDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLRQAI 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMV 418
             ++ H+ +V+ RR+ F +   + R  IL+GL IA  N+DE+I IIR+       K  ++
Sbjct: 360 DYYIKHQEDVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKEALI 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF  +E Q  AI+++RL  L  LE  +I +E   LL E +    +L +     + I  E
Sbjct: 420 QRFGFSEKQAQAIVDMRLGRLTALEREKIDNEYKELLKEIKYYKDVLANKSMVLDIIKKE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E+K+ +        RRT              + +IE E   V +++ G+I+       
Sbjct: 480 LEEIKQKYGDE-----RRTKIIPDEDE---IEIEDLIEVEENVVTLTHFGYIKRLPTSTY 531

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-- 588
              K     +  L  +E D ++      T D IL  +  GK Y L    +       +  
Sbjct: 532 KSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNKGKVYRLKTYEIPEAGRQAKGT 591

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           AI  L+ L+ N+ I T      Y     L + +  G     +  E     + G T + + 
Sbjct: 592 AIVNLLQLDQNEKITTVIPISEYKEGLYLFMATKHGIVKKTDLMEFDNIRKGGLTAVSLR 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++  V    G  ++ +V  N   + F+   +  + R  +GV+  + ++      +  
Sbjct: 652 ENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRPLGRAAQGVKGITLEEDDEVVGMSA 711

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I E  + +    R + +        +  RGG G L  +   ++GK   
Sbjct: 712 DI-ENASVLVVTERGFGKRTELDEYKVQIRGGKGILTYRVTEKTGKVAG 759



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++     +         L+A+  +E D L        T  ILL++ +G +      ++  
Sbjct: 628 IVKKTDLMEFDNIRKGGLTAVSLRENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRP 687

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                + +   I L  + ++V          +LVV+ +G     E  E     R GK  L
Sbjct: 688 LGRAAQGV-KGITLEEDDEVVGMSADIENASVLVVTERGFGKRTELDEYKVQIRGGKGIL 746

Query: 643 KVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
                EK   V         D V ++  +  ++      I  + R  +GV L    +G  
Sbjct: 747 TYRVTEKTGKVAGMKLVSEDDDVMMISSDGSIIRIKAKDISLLGRATQGVTLMRMDEGVS 806

Query: 698 SDVIC 702
              + 
Sbjct: 807 VVSVA 811


>gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames]
 gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987]
 gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne]
 gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055]
 gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum]
 gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94]
 gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI]
 gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames]
 gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987]
 gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne]
 gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI]
          Length = 823

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
 gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
          Length = 822

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 419/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELIEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
 gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
          Length = 893

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVKEEDD 815


>gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 823

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKTQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909]
          Length = 893

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 405/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G  + D+         
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDNVVDLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           +S  ++LVV+  G       SE   + R GK      +   +   + +      + + VV
Sbjct: 710 ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
                ++   +  I +  R  +GVRL    DG     +     E  
Sbjct: 770 TNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDD 815


>gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|332381517|gb|AEE66364.1| DNA gyrase subunit A [Bordetella pertussis CS]
          Length = 893

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/791 (31%), Positives = 390/791 (49%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NPE SI++L+E I  PDFPTGG ++     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPECSIDELIELIPAPDFPTGG-VIYGITGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  +++ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQLIEYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARV 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           ++A    +  +L    +    I+ E++ +K  FS S    RR        E+   D  T 
Sbjct: 488 VMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 MDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + +        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  +  K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    ++G     +     E  + + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 788 TSSRNGRVVGA 798



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
           +       I      D T  +L  +  G       +E   + R  K  + +   S   ++
Sbjct: 736 MLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRV 795

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
              V V   D + ++     L+   + +I EM R  +GV L S  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDG 842


>gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 823

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IRN       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 882

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/801 (33%), Positives = 404/801 (50%), Gaps = 68/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  I++E L+++I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLNEVINGCLAYIDDENITVEGLMQHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RA+  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRAKAEVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++ L+ M+  F +NM  L     P+++ L   L+ +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-HQGQPKLLTLKDCLQAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARG 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGTVAAMLERAGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S  +    I  E+  V++ F  +     RRT   E +    
Sbjct: 475 LDEYKELLEQIAALIFILESPDRLMEVIREELIAVRDQFGDA-----RRTEITENTAD-- 527

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D +   L A+T
Sbjct: 528 -INIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 587 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEANERITAILPVREYEEGRHV 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G       ++       G   + ++  +++  V    G + V +     K++ F
Sbjct: 647 FMATASGTVKKTALTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRF 706

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
              Q+  M R   GVR  +         +     EG   +      Y +           
Sbjct: 707 PESQVRSMGRTATGVRGINLNGEDRVVSLIIPRGEGD-ILTVTENGYGKRTGVAEYPTKS 765

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 766 RATQGVISIKVSERNGNVVGA 786


>gi|167038685|ref|YP_001661670.1| DNA gyrase subunit A [Thermoanaerobacter sp. X514]
 gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513]
 gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513]
          Length = 807

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/757 (32%), Positives = 405/757 (53%), Gaps = 18/757 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSEE----KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD 
Sbjct: 57  LTPDKPYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 117 PAAMRYTEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  
Sbjct: 177 GMATNIPPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES
Sbjct: 236 GRGKIVVRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    + ++P +++  ++M + M+  F   M  L     P+++ L  I+++++
Sbjct: 295 DRNGMKVVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F 
Sbjct: 354 DHQADVVTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+++RL  L  LE  +++ EL+ L+ + +++  +L   ++    I  E+ E+
Sbjct: 414 LSEKQAQAIVDMRLGRLTGLERQKVEDELEELMEKIKELKGILADERKVLEIIKKELLEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++                          +       +        ++ K     +  
Sbjct: 474 KDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   +
Sbjct: 534 ISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGE 593

Query: 601 DIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  + +       + F+   I  M R  KGV   S ++     V    +  G   +   
Sbjct: 654 GEREIIIGTARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPGSEILVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + +  +     L  R G G +  +   ++GK +S
Sbjct: 713 EKGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+ KG     
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPGSEILVVTEKGFGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   +  I +M 
Sbjct: 721 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMH 780

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 781 RDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +  N   IR +   +  + A+  +E D +      H    IL+++  G            
Sbjct: 668 IRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLVHPGSEILVVTEKGFGKRTDLEEYRL 727

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKT 640
               G+ I  +        +V+    +   + +++S+ G    ++ S+I    R  +G T
Sbjct: 728 QTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRDTRGVT 787

Query: 641 FLKVSSEEKMKLVVKVTGDH 660
            +K+   +++    ++  + 
Sbjct: 788 LMKLDDGDRVVSTARIENEE 807


>gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187]
 gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1]
 gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187]
 gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus Q1]
 gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 823

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTGD  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGDEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
 gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
          Length = 854

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/766 (33%), Positives = 420/766 (54%), Gaps = 35/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N      +    +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MADQN---NSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  MSPDKPYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDM 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +L+ ++++ VDF   Y+ E+SEPVV P+++PNLL NG  GIAV
Sbjct: 118 AAAMRYTEARLSKIAMEMLRDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +   ALI+NP+I+  +L++YI GPDFPT G I+  R  I ++Y+ 
Sbjct: 178 GMATNIPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE+G  +  I+V E+PYQV K+RL+EKIAEL+  KRI  + D+RDES
Sbjct: 237 GRGSVTMRAKTTIEEIGNKA-RIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R ++P++++ ++F  + M++ F +NM  +     P+++ L  +L  +L
Sbjct: 296 DRTGMRVVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIV-NNEPKILNLKDVLYHYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+ EV+ RR+ F ++  + R  IL+GL IA  ++DE+IA+IR+       +  ++ RFS
Sbjct: 355 KHQVEVIRRRTEFDLKKAEARAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIERFS 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT  Q  AIL++RL+ L  LE  +I++E + L+ +  +   +L +     N I+ E+ E+
Sbjct: 415 LTLEQSQAILDMRLQRLTGLEREKIENEYNELIQKIAEYREILANEHLVLNIISEELNEL 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT   E++  +++ L + +I +E + + +++ G+I+          K
Sbjct: 475 KERFAD-----DRRT---EITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQK 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +  +  K+ D ++     ++   +L  +  GK Y + A  +        G  I  
Sbjct: 527 RGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIIN 586

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI +   + I        +     L   +  G        +     + G   + +  ++ 
Sbjct: 587 LIQIEQGESINAVIPIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDA 646

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G    ++       + F    +  M R   GV+  +  +     VI   I +
Sbjct: 647 LIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMGRSATGVKGINLDESD--AVIGMDIVD 704

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             L  +    + Y +    +   +  RGG G        ++G  + 
Sbjct: 705 TSLDILIVTAKGYGKRTPVVDYRIQSRGGKGIKTINVTDKNGPVVG 750



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 107/323 (33%), Gaps = 19/323 (5%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               EI     +      +      +T      I  L + + R  +         +   E
Sbjct: 481 DRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDE 540

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTTFC------EVSRADKATL 510
                  + +          + +  +   +         R T        E   +  A +
Sbjct: 541 DFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVI 600

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
                 ++      +  G I+              L A++ +E D+L           ++
Sbjct: 601 PIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMI 660

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + +  G +   P  ++ S       +   I+L+ +  ++   + D++  +L+V++KG   
Sbjct: 661 IGTAQGMSIRFPESDVRSMGRSATGV-KGINLDESDAVIGMDIVDTSLDILIVTAKGYGK 719

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE 680
                +    +R GK    ++  +K   +  +  V T + + ++  +  L+  S+ +I  
Sbjct: 720 RTPVVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKTEEDLMIITASGTLIRTSMGEIST 779

Query: 681 MSR-GKGVRLQSYKDGGISDVIC 702
           M R  +GVRL + +D      +C
Sbjct: 780 MGRNTQGVRLINIRDDDSVATVC 802



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 104/326 (31%), Gaps = 20/326 (6%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
           ++L    +P+   +  +       R  V   RS  R       ++      + +L I   
Sbjct: 492 SILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNS 551

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
              +        V   +     +         + +L ++E+ +  + +  +         
Sbjct: 552 HHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFV----- 606

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
                +  +   A +   +K+         R+        R D A ++  + + +   ++
Sbjct: 607 -----EDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMII 661

Query: 524 ISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + +G         V         +  ++  E D++       T+  IL+++  G     
Sbjct: 662 GTAQGMSIRFPESDVRSMGRSATGVKGINLDESDAVIGMDIVDTSLDILIVTAKGYGKRT 721

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           P  +       G+ I+ +   + N  +V   V  +   L+++++ G        EI    
Sbjct: 722 PVVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKTEEDLMIITASGTLIRTSMGEISTMG 781

Query: 636 RK--GKTFLKVSSEEKMKLVVKVTGD 659
           R   G   + +  ++ +  V +   +
Sbjct: 782 RNTQGVRLINIRDDDSVATVCRANKN 807


>gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
 gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
          Length = 891

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 4   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 64  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 184 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 243 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 303 VRIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 362 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSER 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 422 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 482 GDE-----RRTEI--QLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 534

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 535 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 594

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 595 ENDETISTMIAVKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIA 654

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ F    +  + R   GV+  + ++G +   +     E   
Sbjct: 655 VRLTTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKGITLREGDVVVGLDVAHAESED 714

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 715 EVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIV 756



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           +S  ++LVV+  G        E   + R GK      +   +   + +      + + VV
Sbjct: 711 ESEDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVV 770

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
                ++   ++ I +  R  +GVRL    +G     +     E  
Sbjct: 771 TNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEED 816


>gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
 gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
          Length = 885

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/792 (32%), Positives = 391/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I N +I+I++L++YI GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLNEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +EE   G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKAEIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYSQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDE+I +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 ELGSVASMLERAGTDAARPDWLEDQYGIRDGLYYLTEQQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V+  +                     A
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVITEELELVQATYGDERRSEITAAVHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    G   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFSNVRANGLIAVNLRDDDSLIGVDITDGQSDIMLFSKQGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     +G   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNQGD-ILTVTQNGYGKRTELEEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
 gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
          Length = 809

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 411/758 (54%), Gaps = 30/758 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M ++GL     FKK
Sbjct: 2   ERIVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGE +GK HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +++D VDF+  ++    EP V P+KFPNLL NG SGIAVGMAT+IP H
Sbjct: 122 RLSKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A   L+D+PE + E+L+++I GPDFPTG  ++   E + + Y+ GRG   +RA
Sbjct: 182 NISEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINP-EELPKIYKKGRGSVTIRA 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV      IV+TE+PYQV K+ LI+KIAEL+  K+I  + DIRDES  +   V+ 
Sbjct: 241 KHTIEEVR-KRSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVI 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P +++  ++ L+ ++T F  NM  L     P+++ L   L+E++  RREV+ R
Sbjct: 300 ELKRDATPQVVLNRLYKLTPLQTNFNFNMIALV-NGEPKLLNLKRYLEEFIGFRREVILR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAI 431
           R+++ ++  + R+ IL+GL  A  NID ++ +++    P+     +  +F L+E Q  AI
Sbjct: 359 RTAYLLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREKFELSEAQAKAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I  E   L  E      ++ S ++Q   I  E+ ++ E F     
Sbjct: 419 LDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMESDQEQRRLIKEEMAQIIEKFGD--- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
             +RRT              ++MIE E + + ++++G++  + + +          +  +
Sbjct: 476 --QRRTKIVSKESE---IDIESMIEDEEVIIFLTHKGFVARVSAGTYRTQSRSGTGVRGI 530

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ--- 600
             +EGD +K  + A + D +L+ +  GK Y L A  +           +   L       
Sbjct: 531 KTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPSRGHSIRNFLPGMAGNE 590

Query: 601 ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
               I+    +     +  V+ +G        E       G   + +   +++  V  V+
Sbjct: 591 IVSRIIPVKEFSLNKDVFFVTQRGYVKRTPLKEFSNPRSTGINAINLEPGDRLVYVGLVS 650

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D++ ++ +N + + F +  + +M R  +GVR                  E    +   
Sbjct: 651 DKDNIILISKNGRAIKFPVADVRQMGRNARGVRGILLDPDDSVVAAAVVEPEDRFLLIVT 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + Y +        L +RGG G +  K   ++GK   +
Sbjct: 711 EKGYGKRVEIEEFHLQRRGGKGLIAAKLSEKTGKVADA 748



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 6/182 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S  ++A++ + GD L         D I+L+S +G+A   P  ++     +   ++ +
Sbjct: 626 NPRSTGINAINLEPGDRLVYVGLVSDKDNIILISKNGRAIKFPVADVRQMGRNARGVRGI 685

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KM 650
           +    +  +  A V      LL+V+ KG    VE  E     R GK  +     E   K+
Sbjct: 686 LLDPDDSVVAAAVVEPEDRFLLIVTEKGYGKRVEIEEFHLQRRGGKGLIAAKLSEKTGKV 745

Query: 651 KLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
                +  D  + +V +  K++      IP   R  +GVR+Q   +   +  V      E
Sbjct: 746 ADATTLKDDEPIILVSKKGKIIRVKSADIPVYGRHTRGVRIQKLAEDDAVVSVSKVTEAE 805

Query: 708 GL 709
             
Sbjct: 806 EE 807


>gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A
 gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144]
          Length = 893

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVNEEDD 815


>gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
 gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
          Length = 821

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/765 (32%), Positives = 419/765 (54%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLTLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +IE+E I V +++ G+++          K
Sbjct: 476 KERFNDE-----RRTEIV--TSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +++   L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALGLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  +   +   + E
Sbjct: 649 LMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    + Y +           RGG G    K    +G+ ++
Sbjct: 708 ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVA 752



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L        T +I++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALGLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  +V   + +    +L+V+ KG        E    +R GK         +  ++
Sbjct: 691 ITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V    G+  + ++  +  L+   I+ I    R  +GVRL    +      +   
Sbjct: 751 VAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
 gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 402/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  +  +++ +++  + +++ F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRIVIDVRKDANASVILNNLYKQTPLQSSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 361 VVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVRNLESEDDYLVFATKRGIVKRSALSNFSRINKNGKIAISFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ F    +  + R   GV+  + ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKGITLREGDEVVGLDVAHAESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 589 AIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L    ++V       +S  ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGITLREGDEVVGLDVAHAESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   ++ I +  R  +GVRL    +G     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMKLGEGQFVSTV 807

Query: 702 C 702
            
Sbjct: 808 A 808


>gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937]
 gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937]
          Length = 877

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/793 (32%), Positives = 397/793 (50%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA ID+  IS+E L+ +I GPDFPT   I+  +  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAA-IINGKRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++  + M+  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKEILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA  NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +    + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WALGGVAAMLERAGDDAARPEWLEPEFGIHDGYYHLTELQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LLA+  ++  +L S ++    I  E+  ++E ++ +        +         
Sbjct: 475 LDEYKELLAQIAELLFILRSPERLMEVIREELVAIREQYNDARRTEITHNSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQENVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y L    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWLKVYQLPEASRGARGRPIINLLPLEPDERITAILPVREYEEGMNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +D      +     EG   +      + +        +  R   G + 
Sbjct: 715 GRTATGVRGINLQDDDRVVSLIVPRGEGD-ILTVTQNGFGKRTAVTEYPVKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV  +   +R++   +  +  ++ ++ D +   +       IL ++ +G
Sbjct: 692 NEVMLFSAEGKVVRFSESAVRTMGRTATGVRGINLQDDDRVVSLIVPRGEGDILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                            + +  +     N  +V A   DS  ++++++  G       SE
Sbjct: 752 FGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDSADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSE---------------EKMKLVVKVTGD 659
           +    R   G T ++ + +               +++  VV V G+
Sbjct: 812 VSIVGRNTQGVTLIRTAEDEQVVGLQRVAEPVEDDELDSVVPVDGE 857


>gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
 gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
          Length = 812

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/758 (34%), Positives = 403/758 (53%), Gaps = 30/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E V  V +   + + Y+ YA+S I  RA+PD+RDG KPVHRR+++ M E+G  +   +
Sbjct: 3   TQETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+V+GK HPHGD ++YD++VR+ Q F  RYPLI GQGNFG++DGDSAAA RYT
Sbjct: 63  KKSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A+ +L  +D++ V+F   ++E   EP V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 123 EVRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALI++P I   +LL+ I GPDFPTG  I   RE I ++Y  GRG  ++
Sbjct: 183 PHNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIY-GREGIKDAYLTGRGSIKI 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E G G   I+VTEIPY V K++LIE IA+L+  K++  + D+RDES  D   +
Sbjct: 242 RAKAEITEEG-GRNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRI 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + ++L+  ++  + MET F +N   L     P+ + L   L+ +L HR+EV+
Sbjct: 301 VIELKKGANANVLLNQLYRHTQMETTFGVNNLALVD-NQPRTLSLKETLEYYLKHRQEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RRS F ++    R  IL GLL+A  NID+ + I+R     D  K V +S++ L+E Q  
Sbjct: 360 TRRSQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSKYGLSEEQSK 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+ E   L+     +  +L S +   + I  E+ E++  +   
Sbjct: 420 AILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLASPQMVLDIIKNELLELRAKYGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT   E   +D   + + +I  E + V ISN G+I+     +          + 
Sbjct: 479 ----GRRTIIKE---SDGEIVDEDLIPVENVVVTISNTGYIKRQPVDTYRTQRRGGMGIM 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
            +  KE D +     A T D +L  +  G+ Y L    +     +  G+AI  L+ L  N
Sbjct: 532 GMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQSRGKAIVNLLTLMPN 591

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +        +D    L++ + +G       S      R G   + +   +++  V   
Sbjct: 592 ESVNAMIPIKEFDEKHYLIMCTREGTIKKTALSSFQNIRRTGIIAIGLDEGDELISVKLT 651

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             G  V +   N K   FS  ++  M R   GV      +     +    + E  + +  
Sbjct: 652 NGGQEVLIATRNGKANRFSESEVRPMGRQAGGVIGIRLTEKDKV-IGMEVVSESASILTV 710

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +           RGG G +  K   R+G  ++
Sbjct: 711 CENGFGKRTAISEYTPHHRGGQGMINIKTTLRNGGVVA 748



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEK 649
           I L     ++   V   +  +L V   G       SE   + R G+  +     + +   
Sbjct: 687 IRLTEKDKVIGMEVVSESASILTVCENGFGKRTAISEYTPHHRGGQGMINIKTTLRNGGV 746

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           + +      D + VV  +  ++  ++  I E+SR  +GV++ + K    + V   K+   
Sbjct: 747 VAIASVTDDDQLLVVTRDGIMMRINVKDISEISRNTQGVKIITLKSENDAVVGVAKLVSE 806


>gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
 gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
          Length = 1016

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/796 (30%), Positives = 385/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 141 PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 200

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 201 VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 260

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 261 IAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 320

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 321 VVDGCLHLLRNPDATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 379

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    
Sbjct: 380 EDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELK 439

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 440 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 498

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 499 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVRDMLSRA 558

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 559 ESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 618

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 619 VMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELDTEDLITPQDLV 678

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 679 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 738

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 739 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 798

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 799 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 858

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++G     +     E           + + +    Y +           RG  G
Sbjct: 859 VRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKG 918

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 919 MIAIQTSERNGKVVAA 934



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 792 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 851

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 852 MGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 910

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 911 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 970

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 971 TLIAVGEG 978


>gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028]
          Length = 894

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVNEEDD 815


>gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
 gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 884

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/764 (33%), Positives = 410/764 (53%), Gaps = 30/764 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +++L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+  
Sbjct: 2   ADSLPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA
Sbjct: 62  DKPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMA
Sbjct: 122 MRYTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  L L  NP+++I +L+E I GPDFPT G ++  +  I  +Y  GRG
Sbjct: 182 TNIPPHNLTEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSG-LILGKSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
             ++RAR  +EE G G   IVVTEIPYQV K+R+IEKIAEL   KRI  + D+RDE++  
Sbjct: 241 SIQMRARASIEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLR 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    +  + ++++ +++  + ++T F +NM  L     P+++ L   L E+L H
Sbjct: 301 TGVRVVIDVRKDANANVILNNLYKHTPLQTSFGVNMIALV-NGRPKLINLKEALVEYLEH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           ++ V+ RR+ + ++    R  IL+GL IA  +IDEII+IIR  D        +  RF L+
Sbjct: 360 QKTVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQERFKLS 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL++RLR L  LE  +I++E + LL+   +++ +L + +     +  E+ E+KE
Sbjct: 420 ERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAELEEILANEEVLLQLVRDELTEIKE 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F        RRT              + +I +E I + +S+  +I+             
Sbjct: 480 RFGDE-----RRTEI--QLGGLDHLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLI 594
              +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I
Sbjct: 533 GRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAI 592

Query: 595 DLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +L +++ I T        D    L+  + KG       S      + GK  +    ++++
Sbjct: 593 ELENDEVISTMIAVRDLEDENSFLVFATKKGIVKRSALSNFSHINKNGKIAIGFKEDDEL 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE- 707
             V    G   + +   +  L+ F  + +  + R   GVR  S ++  +   +     E 
Sbjct: 653 IAVRLTDGKQDILLGTAHASLIRFPENSLRPLGRTASGVRGISLRENDVVVGLDVAYAES 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +    + Y +        L  RGG G    K   R+G  +
Sbjct: 713 EDEVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNVV 756



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG----DHVAVV 664
           +S  ++LVV+ KG       SE   + R GK        E+   VV +T     + + +V
Sbjct: 711 ESEDEVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNVVCITTVSGQEDLMIV 770

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
            +   ++   ++ I +  R  +GVRL    D      +   I +
Sbjct: 771 TDGGIIIRLQVEDISQNGRATQGVRLMKLGDNQAVSTVAKVIDK 814


>gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
 gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
          Length = 824

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 2   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 60  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 120 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 180 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 239 GRGSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 299 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 358 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 418 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 478 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 530

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 531 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 590

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 591 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 650

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 651 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 710 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 754



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 634 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 692

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 693 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 751

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 752 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 811

Query: 708 G 708
            
Sbjct: 812 D 812


>gi|167036442|ref|YP_001664020.1| DNA gyrase subunit A [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 807

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/757 (32%), Positives = 402/757 (53%), Gaps = 18/757 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSEE----KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG++DGD 
Sbjct: 57  LTPDKPYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 117 PAAMRYTEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  
Sbjct: 177 GMATNIPPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES
Sbjct: 236 GRGKIVVRAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++P +++  ++M + M+  F   M  L     P+++ L  I+++++
Sbjct: 295 DRNGMKIVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVD-GEPKILNLKQIIEKYV 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F 
Sbjct: 354 DHQADVVTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+
Sbjct: 414 LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEI 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++                          +       +        ++ K     +  
Sbjct: 474 KDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++       +  AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +         +    +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  + +       + F+   I  M R  KGV   S ++     V    +      +   
Sbjct: 654 GEREIIIGTARGYAIRFNEKDIRPMGRVAKGVIAISLREDDEV-VEMDLVHPNSEILVVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +  +     L  R G G +  +   ++GK +S
Sbjct: 713 ENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A      ++       + +   I L  + ++V   +     ++LVV+  G     
Sbjct: 662 TARGYAIRFNEKDIRPMGRVAKGVI-AISLREDDEVVEMDLVHPNSEILVVTENGFGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS 682
           +  E    TR GK  + +   EK   +  +  V   D   ++  N  L+   +  I +M 
Sbjct: 721 DLEEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMH 780

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R  +GV L    DG           E 
Sbjct: 781 RDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 2/140 (1%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +  N   IR +   +  + A+  +E D +      H    IL+++ +G            
Sbjct: 668 IRFNEKDIRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEILVVTENGFGKRTDLEEYRL 727

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKT 640
               G+ I  +        +V+    +   + +++S+ G    ++ S+I    R  +G T
Sbjct: 728 QTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRDTRGVT 787

Query: 641 FLKVSSEEKMKLVVKVTGDH 660
            +K+   +++    ++  + 
Sbjct: 788 LMKLDDGDRVVSTARIENEE 807


>gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae]
          Length = 881

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/803 (33%), Positives = 410/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMAKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA ID+  ISIE LLEYI GPDFPT   I+  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLSEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAA-IINGRRGIIDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 240 RTGRGKVYIRARANIEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISALR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+
Sbjct: 300 DESDKDGMRIVIEVKRDAVAEVVLNNLYSLTQLQVSFGINMVALYD-GQPRLLNLKEILE 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P         
Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIA 418

Query: 416 ------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                         V   ++ LTE Q  AIL+LRL+ L  LE  
Sbjct: 419 RPWQLGNVSAMLASAGDNAARPEWLEPQYGVREGQYYLTEPQAQAILDLRLQKLTSLEHD 478

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E   LL +   +  +L S ++    I  E+  VKE +        RRT   E S  
Sbjct: 479 KILDEYRELLKQIAALLYILTSPERLMEVIREELEAVKEQYRD-----VRRTEITENSAD 533

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+          + +      SA   KE D ++  L A
Sbjct: 534 ---INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVA 590

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        +D   
Sbjct: 591 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITAILPVREFDDGH 650

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        +       G   + ++  +++  V    G + V +     K++
Sbjct: 651 YVFMATASGTVKKTSLKDFSRPRSAGIIAVNLNEGDELIGVDLTAGKNEVMLFSAGGKVV 710

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ + +  M R   GVR      G     +     EG   +      Y +         
Sbjct: 711 RFAENAVRPMGRTATGVRGIKLHAGDKVVSLIVPRGEGD-ILTVTENGYGKRTEQSEYPT 769

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 770 KSRATQGVISIKVSERNGNVVGA 792


>gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
 gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A
 gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
          Length = 893

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/762 (33%), Positives = 405/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L   R P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNSR-PKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVNEEDD 815


>gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 807

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/758 (34%), Positives = 412/758 (54%), Gaps = 18/758 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++   +   V  + ++  +E  +L YA+S I  RA+PD+RDG KPVHRRI+ AM ++G
Sbjct: 1   MSDT---MRGKVVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSAR+VGEV+GK HPHGD ++YD++VR+AQ F  RYPL+ G GNFG++DGDS
Sbjct: 58  ITPEKPYKKSARVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +++  +L+ +D++ +D++  ++E   EPVV PS+FPNLL NG++GIAV
Sbjct: 118 AAAMRYTEVRMAKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A+I+NPEI+ E L+ YI GPDFPTGGII+  R  I ++Y  
Sbjct: 178 GMATNIPPHNLDEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIIL-GRNGIKDAYST 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  +E +      I+VTEIPYQV K++LIE IA L+  K+I  + D+RDES
Sbjct: 237 GRGKLKIRAKTEIENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R ++P++L+  ++  + +E  F + +  L     P+V+ L  IL  +L
Sbjct: 297 DRDGLRVVIELKRDVNPNVLLNQLYKYTTLEQSFGIILLALV-NGEPKVLSLREILDHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
             ++EV+ RR+ + ++  + R  IL+GL IA  N+D +I +IR     K      ++ FS
Sbjct: 356 EFQKEVIIRRTKYLLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMNNFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL+ L  LE  +I+ E   LL + +  + +L   +   N I  EI+E+
Sbjct: 416 LSDKQAQAILDMRLQKLTALERDKIEEEYSELLKKIDYYNRVLGDEQLVLNIIKEEIQEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +S S        T            +  +       V        R+ K     +S 
Sbjct: 476 KEKYSDSRRTLITNKTDELDEEDLIPDEEVIITLTHQGYVKRVPLSTYRNQKRGGRGISG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
           +  K  D ++      T + IL  +  GK Y L    +     +  G AI  L+ ++ ++
Sbjct: 536 MTTKNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAIDPDE 595

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L  V+ +G A  V  SE+ A  + G   + ++ ++++  V    
Sbjct: 596 HITAVIPIQEFTEDDYLFFVTKQGVAKKVILSELKAYRKDGLIAINLNEDDELIDVHLTD 655

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDS 714
           G   + +  E    + FS +++  M R  +GV+  S KD     VI   I  E    +  
Sbjct: 656 GKQEIILGTEQGLAIKFSEEEVRSMGRNSRGVKGISLKDNDR--VIGMDIAQENSDLLIV 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +   Y +           RGG G    K   +SG    
Sbjct: 714 SENGYGKRTPVSEYRTQSRGGKGIYTFKPSEKSGNLAG 751



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/508 (12%), Positives = 143/508 (28%), Gaps = 24/508 (4%)

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L    + +  +    II      G   V S   I++ Y   +    +R R         +
Sbjct: 317 LNQLYKYTTLEQSFGIILLALVNGEPKVLSLREILDHYLEFQKEVIIR-RTKYLLRKAEA 375

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
              ++  +   +     + K+        +    L +    S +  + +L  + + L   
Sbjct: 376 RAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMNNFSLSDKQAQAILDMRLQKLTAL 435

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
              +     S++  +      VL   ++   +  + I +    +        ++   +  
Sbjct: 436 ERDKIEEEYSELLKKIDYYNRVLGDEQLVLNIIKEEIQEIKEKYSDSRRTLITNKTDELD 495

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           +  +   + ++I   +   +  +       +        ++         +         
Sbjct: 496 EEDLIPDEEVIITLTHQGYVKRV--PLSTYRNQKRGGRGISGMTTKNDDFVEHLFATSTH 553

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
            Y +       +   +  +    S + +   I   +           +         E +
Sbjct: 554 NYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAI------DPDEHITAVIPIQEFT 607

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
             D           + + +                 L A++  E D L           I
Sbjct: 608 EDDYLFFVTKQGVAKKVILSELKAYRKD-------GLIAINLNEDDELIDVHLTDGKQEI 660

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +L +  G A       + S   +   +   I L  N  ++   +      LL+VS  G  
Sbjct: 661 ILGTEQGLAIKFSEEEVRSMGRNSRGV-KGISLKDNDRVIGMDIAQENSDLLIVSENGYG 719

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
                SE    +R GK        EK   +   + V  D  + +V     +    ++ I 
Sbjct: 720 KRTPVSEYRTQSRGGKGIYTFKPSEKSGNLAGCIVVNEDEEIILVTAQGVINRQQVEGIS 779

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +MSR  +GVRL   KD      +     
Sbjct: 780 QMSRRTQGVRLIKLKDDDQVVSLAIPES 807


>gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
 gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
          Length = 889

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 395/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++ +I+IE L+E+I GPDFPTG  I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGA-IINGRRGIDEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYVRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTLIGELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +   + K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSTDGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
          Length = 891

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/791 (31%), Positives = 390/791 (49%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP  ++++L+E I  PDFPTGG I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPACTVDELIEIIPAPDFPTGG-IIYGMSGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IV+  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQMIDYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVRDMLSRA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           +++    +  +L   ++    I+ E++ +K  FS +T   RR        E+   D  T 
Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 TDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + I        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  ++ K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    ++      +     E  T + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEETQTVIALLVAGDETQTVLTATENGYGKRTPIGEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 788 TTSRNGKVVGA 798



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 9/187 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKM 650
           +       I      D T  +L  +  G        E   + R  K  + +   S   K+
Sbjct: 736 MLEETQTVIALLVAGDETQTVLTATENGYGKRTPIGEYTRHGRGTKGMIAIQTTSRNGKV 795

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG----GISDVICFK 704
              V V   D + ++     L+   + +I EM R  +GV L +  DG    G+  V+   
Sbjct: 796 VGAVLVNPTDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGSTLSGVRRVVESD 855

Query: 705 ICEGLTW 711
             +    
Sbjct: 856 ADDDGEL 862


>gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3]
 gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3]
          Length = 823

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
 gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B]
 gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
          Length = 823

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 421/765 (55%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         ++   + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  +      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGEEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      +     +
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810

Query: 708 G 708
            
Sbjct: 811 D 811


>gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
 gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
          Length = 879

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 395/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDE+I +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ +  +        T         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L        G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 876

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/792 (32%), Positives = 405/792 (51%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++ +I+I++L+EYI GPDFPT  +I   R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAMIS-GRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   IVV EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRAKAEIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKIFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  IL+GL +A  NIDEII ++R    P            
Sbjct: 355 NHRREVVTRRTIYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +  +++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEAQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L+S ++    I  E+  VKE FS +        +          
Sbjct: 475 EEYKALLDEIAELMHILSSSERLMEVIREELELVKEQFSDARRTEITAASHDIDMEDLIT 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      +A   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  ++ L  N+ I        Y++   + + ++ G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVREYEADKFVFMATADGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  E+ +  V    G + + +  +  K++ FS +Q+  M 
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLRDEDTLIGVDITDGQNDIMLFSKAGKVVRFSEEQVRGMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGIKLAESDKVVSLIVPHNEGD-VLTVTENGYGKRTELAEYPAKSRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGSVVGA 785


>gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271]
 gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271]
          Length = 823

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 420/765 (54%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQQQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G ++  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAG-LILGRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L     PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLV-NGEPQVLNLKQNLYHYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+          ++ RF 
Sbjct: 357 EHQKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE F+      +RRT         +    + +I ++ I + +++ G+I+ L + +     
Sbjct: 477 KERFND-----KRRTEIT--IGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIIN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++  + I        +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V   +GD  + V   N  L+ F+   +  M R   GV+  +  D      +   + E
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGDEDQVVGMEI-VEE 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +      Y +        L  RGG G        ++GK ++
Sbjct: 709 DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+  +E D +           I++ +++G        ++ S   +  A    
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNA-AGVKA 691

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L     +V   + +    +L+V+  G        E    +R GK      +   +  K
Sbjct: 692 ITLGDEDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNG-K 750

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  V  VTG+  + ++     ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 751 LVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99]
          Length = 878

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 417/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  +        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GD-----DRRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I  +I+L
Sbjct: 534 GVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V    G+ H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VCLTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVCLTDGEK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D   +  +LVV+ 
Sbjct: 662 HILIGTAQASLIRFKETDVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNQDEILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    +      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDI 817


>gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
 gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
          Length = 878

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 418/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  +        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GD-----DRRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D++L  +  G+ Y L    +       +   I  +I+L
Sbjct: 534 GVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V    G+ H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VRLTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D   +  +LVV+ 
Sbjct: 662 HILIGTAQASLIRFKETDVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNQDEILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    +      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDI 817


>gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
 gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 399/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   LL E  ++  +L S ++    I  E+  V++ F+ +        +         A
Sbjct: 475 AEYKELLEEIAELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V   TG   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 840

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 409/756 (54%), Gaps = 30/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             +    +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMS++G+     FKK
Sbjct: 7   SQIIDRDINVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDKPFKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ ++++ +DF   Y+ E+ EPVV PS+FPNLL NG SGIAVGMAT+IP H
Sbjct: 127 RLSKIAMEMLRDINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   ALI NPEIS  +L++YI GPDFPT   I+  R  I ++Y  GRG   +RA
Sbjct: 187 NLGEVIDGVQALIKNPEISSLELMDYIKGPDFPTAAYIL-GRSGIRQAYTTGRGSITMRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE    +  IVV E+PYQV K+RL+EKIAEL+  K+I  + D+RDES      V+ 
Sbjct: 246 KTTIEEHNNKA-RIVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMRVVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P++++ +++  + +++ F +NM  +     P+++ L  +L  +L H+ EV+ R
Sbjct: 305 ELRRDVNPNVVLNNLYKHTALQSTFGINMLAIV-NNEPKILTLKDVLSHYLQHQVEVVRR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  +IDE+IA+IR  +  +       +RF L+  Q  AI
Sbjct: 364 RTEFDLKKAEARAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITRFGLSLEQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I+ E + LL +  +   +L + +     I  E++E++E ++    
Sbjct: 424 LDMRLRRLTGLEREKIEDEYNELLQKIAEYREILANEQLVLKIIGEELQEIRERYADE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   E++  +++ L + +I +E + + I++ G+I+          K     +  +
Sbjct: 482 ---RRT---EITIGEESILDEDLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQD 601
             K+ D ++     ++   ++  +  GKAY L A  +        G  I  LI +   + 
Sbjct: 536 DTKDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGET 595

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +        +D    L   + +G        + I   + G   + +  ++ +  V    G
Sbjct: 596 VNAVIEVERFDDNKYLFFATKQGIVKKTPIEDYINIRKGGLIAVNLREDDTLIDVKLTDG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + V +       + F    +  M R   GV+  +  +G     +   +  G   +    
Sbjct: 656 NEEVIMGTAQGMSIRFPESDVRSMGRAATGVKGITLDEGDSVIGMDVVVP-GQDVLIVTA 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G        ++G  + 
Sbjct: 715 NGYGKRTPISEYRTQSRGGKGIKTINVTEKNGTVVG 750



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 101/320 (31%), Gaps = 19/320 (5%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
            EI     +      +      +T      I  L + + R  +         +       
Sbjct: 484 TEITIGEESILDEDLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDNDFV 543

Query: 461 IDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTTFC------EVSRADKATLQQA 513
               + +            +  +   +         R T        E      A ++  
Sbjct: 544 EHLFVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGETVNAVIEVE 603

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
             +        + +G ++              L A++ +E D+L         + +++ +
Sbjct: 604 RFDDNKYLFFATKQGIVKKTPIEDYINIRKGGLIAVNLREDDTLIDVKLTDGNEEVIMGT 663

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             G +   P  ++ S       +   I L+    ++   V      +L+V++ G      
Sbjct: 664 AQGMSIRFPESDVRSMGRAATGV-KGITLDEGDSVIGMDVVVPGQDVLIVTANGYGKRTP 722

Query: 628 ESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSR 683
            SE    +R GK    + V+ +    + +KV    + + ++  +  L+  S++ I  M R
Sbjct: 723 ISEYRTQSRGGKGIKTINVTEKNGTVVGLKVVKDEEDLMIITASGTLIRTSMEGISTMGR 782

Query: 684 -GKGVRLQSYKDGGISDVIC 702
             +GV+L + ++      +C
Sbjct: 783 NTQGVKLINIREDDTVATVC 802



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/346 (11%), Positives = 97/346 (28%), Gaps = 8/346 (2%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
                +    +   +             ++L    +PQ   +  I       R  V   R
Sbjct: 464 LKIIGEELQEIRERYADERRTEITIGEESILDEDLIPQEEVVITITHTGYIKRLPVTTYR 523

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R       ++      + +L +      +            +               
Sbjct: 524 SQKRGGRGVVGMDTKDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTP 583

Query: 436 LRSLRKLEEYQIKSE--LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           + +L ++E+ +  +         + + +      G  +   I   I              
Sbjct: 584 IINLIQIEQGETVNAVIEVERFDDNKYLFFATKQGIVKKTPIEDYIN--IRKGGLIAVNL 641

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           R   T  +V   D    ++ ++       +      +RS+   +  +  +   EGDS+  
Sbjct: 642 REDDTLIDVKLTDGN--EEVIMGTAQGMSIRFPESDVRSMGRAATGVKGITLDEGDSVIG 699

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +L+++ +G     P     +    G+ I+ +     N  +V   V      
Sbjct: 700 MDVVVPGQDVLIVTANGYGKRTPISEYRTQSRGGKGIKTINVTEKNGTVVGLKVVKDEED 759

Query: 614 LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           L+++++ G         I    R   G   + +  ++ +  V +  
Sbjct: 760 LMIITASGTLIRTSMEGISTMGRNTQGVKLINIREDDTVATVCRTD 805


>gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
 gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
          Length = 855

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 423/760 (55%), Gaps = 30/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +  VK +++   ++  ++ YA+S I  RA+PD RDG KPVHRRI++AM+E+G+    
Sbjct: 3   EQDQSRVKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMSKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H + E+ +A LAL  NP+ISI +L+EYI GPDFPTG  I+  R  I ++Y+ GRG  
Sbjct: 183 IPPHQLGEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEIL-GRSGIRKAYQTGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE   G   I+V+E+PYQV K++LIEKIAEL+  K+I  + D+RDES  +  
Sbjct: 242 TLRAQTEIEEYK-GKPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  + ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +L H+ +
Sbjct: 301 RIVIELRRDANANVLLNNLYKQTALQTSFGINLLALV-EGQPKVLTLKECLEHYLGHQVQ 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR++F ++  + R  IL+GL IA  ++DE+I++IR+       +  ++ +FSL+  Q
Sbjct: 360 VIRRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQFSLSYEQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   L+A+  ++ ++L  G++    I  E+ EVKE F+
Sbjct: 420 AQAILDMRLQRLTGLERDKIENEYKELIAKIAELKAILADGEKVLEIIREELIEVKEKFN 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                  RRT     S  +     + +I ++ + + +++ G+I+ +        +     
Sbjct: 480 DE-----RRTVI---SMNEDHLEDEDLIPRQNVVITLTHHGYIKRMPISTYRSQRRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   + D ++     ++   IL  +  GK Y L    +       +   I  L+ + 
Sbjct: 532 IQGMGTNDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIE 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T      +D    L  ++  G A   + S      R G   + +  ++++  V 
Sbjct: 592 QDETISTVIPIEEFDDNSYLFFLTKHGIAKRTQLSSFANIRRGGLFAITLRGDDELHGVR 651

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
               G  V +  ++   + F    +  M R   GV+  S  D      +   + E    +
Sbjct: 652 LTDGGQEVIIGTKHGMAIRFHETDVRLMGRTAGGVKGISLSDDDHVVGMDI-LEENHQVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +        +  RGG G        ++G  +S
Sbjct: 711 IVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKNGSLVS 750



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 63/214 (29%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E        +     +       ++  G  +  +  S        L A+  +  D L  
Sbjct: 590 IEQDETISTVIPIEEFDDNSYLFFLTKHGIAKRTQLSSFANIRRGGLFAITLRGDDELHG 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +++ +  G A      ++             I L+ +  +V   + +   +
Sbjct: 650 VRLTDGGQEVIIGTKHGMAIRFHETDVRLMGRTA-GGVKGISLSDDDHVVGMDILEENHQ 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRK 669
           +L+V+  G        E     R GK      +   +   + L V      + ++  +  
Sbjct: 709 VLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKNGSLVSLKVVSDEHDIMIITASGI 768

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   ++ I    R  +GV L    +      + 
Sbjct: 769 IIRMHVEGISTTGRNTQGVTLIRVNEKEEVATVA 802


>gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
 gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
          Length = 877

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/792 (32%), Positives = 396/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALN-NGQPQLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F           +         A
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 417/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  +        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GD-----DRRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I  +I+L
Sbjct: 534 GVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-L 709
           V    G+ H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VRLTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D   +  +LVV+ 
Sbjct: 662 HILIGTAQASLIRFKETDVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNQDEILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    +      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDI 817


>gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
 gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
          Length = 884

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LALI++  I+I+ L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLALIEDENITIDGLMEFIPGPDFPTAA-IINGRRGIDEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYVRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKEILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTLIAELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|116251375|ref|YP_767213.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256023|emb|CAK07104.1| putative topoisomerase IV subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 751

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/739 (65%), Positives = 618/739 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +++++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPNSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII+++RESI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDNRESIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL
Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AIDRR+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL+S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLSSDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +    D+  +QQAMIEKEPITVVIS +GWIR+LK H  D +AL FKEGD LKI
Sbjct: 493 RRRTQFADAPETDEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTAALTFKEGDGLKI 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQAVLTAFVHDPSRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E++ANTRKGK  + V   E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +S+++L+ WL  R
Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLVWEDSAGRTFTKSKDELVEWLADR 732

Query: 734 GGVGSLVPKGFPRSGKFLS 752
              G  VPKGFPRSGKF  
Sbjct: 733 ATAGRTVPKGFPRSGKFAG 751


>gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126]
          Length = 904

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/812 (32%), Positives = 395/812 (48%), Gaps = 71/812 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MSDNAK----EILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELK 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            DF   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    +ALI +P I+I+ L+ +I GPDFPT  +I   R+ I ++YR 
Sbjct: 177 GMATNIPPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMIS-GRKGIEDAYRT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   IVV EIPYQV K+RLIEKIAEL+  KRI  +  +RDES
Sbjct: 236 GRGKIYLRAKAEIETDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R+   ++L+  ++  + ++T F +NM  L     P+V  L   L+ ++
Sbjct: 296 DKDGMRIVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALD-NGQPKVFNLKETLECFI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL IA  NID II +I+    P            
Sbjct: 355 LHRREVVTRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGDVAQMLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL    ++  +LNS ++    I  E+ +V++ F           +          
Sbjct: 475 EEYKQLLEIIAELLHILNSPERLMEVIQEELEKVRDEFGDERRTEITAASHDIDIEDLIE 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 QEDVVVTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L        G  I  ++ L  N+ I        ++    +L+ ++ G  
Sbjct: 595 RGRLYWLKVYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGKFVLMATANGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID------ 676
              + S        G   + ++  +++  V    G D + +  +  K++ F+        
Sbjct: 655 KKTDLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSET 714

Query: 677 --------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M R   GVR    +DG     +     +G   + +    + +
Sbjct: 715 GEVKRDPETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVPKGDGP-ILTATENGFGK 773

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+GK + +
Sbjct: 774 RTPLEDYPAKSRATQGVVSIKVSERNGKVVGA 805


>gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116]
          Length = 878

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 395/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDE+I +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ +  +        T         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L        G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 405/792 (51%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN EI+I++L+EYI GPDFPT  +I   R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMIS-GRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 NHRREVVTRRTIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +  + + LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 ELGNVAAMLERAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L+S ++    I  E+  VKE F+ +        T          
Sbjct: 475 DEYKTLLEEIAELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLIN 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      +A   K+ D ++  L A+T D IL  ST
Sbjct: 535 QEDVVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  ++ L  N+ I        Y++   + + ++ G  
Sbjct: 595 RGRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVKEYEADKFVFMATADGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  E+ +  V    G + + +  +  K++ F+  Q+  M 
Sbjct: 655 KKTPLTDFSRPRSAGIIAVNLRDEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +      +     +G   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGIKLAESDNVVSLIVPHNDGD-VLTVTENGYGKRTELEEYPAKSRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGSVVGA 785


>gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CFBP2957]
          Length = 885

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/796 (30%), Positives = 385/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NPE ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPEATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVRDMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + +DG     +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEDGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 788 MIAIQTSERNGKVVAA 803



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEDGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 840 TLIAVGEG 847


>gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
 gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
          Length = 890

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LALI++  I+IE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLALIEDENITIEGLMEFIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   R+ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEYGIRDGRYFLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 885

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVGL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE+++ +        T         
Sbjct: 475 LDEYKELLTVIAELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
 gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/807 (30%), Positives = 400/807 (49%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +   ++SL   + + YL YA+S I  RA+PD+RDG KPVHRR++  M EM   +  
Sbjct: 2   DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + K AR+VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG+IDGD+AAA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ +++E +L  +D++ +DF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTECRLDRISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+   AL L+  P+ +I++L++ I  PDFPTGG I+     + E YR GRG  
Sbjct: 182 IPPHNLVEVINGALQLLHQPDCTIDELIDIIPAPDFPTGG-IIYGVSGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   EE GR G   I+V E+PYQV K  L+E+IAE +  K++  + DIRDES +  
Sbjct: 241 VMRAKTHFEEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ ++F  + ++  F +NM  L     P+++ L  +L+ +LAHRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVD-GQPKLLNLKQMLECFLAHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  IL+GL +A  NID+ IAIIR    P                
Sbjct: 360 EVVTRRTIFELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSL 419

Query: 415 -----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+E Q   IL +RL+ L  LE+ 
Sbjct: 420 VKSMLERTGADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E  +++A+  ++  +L   ++    I  E+++V   + +     RR     E+   
Sbjct: 480 KILNEYGDVMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDVRRS----EIELN 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G+ +S         K       A   KE D +     A
Sbjct: 536 ASDLETEDLITPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L  ++ I            +
Sbjct: 596 NTHDYILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGDEKITVILPLSGENRNF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S+G       ++     + G   + +   + +       G H V +  + 
Sbjct: 656 PDNHYIFMATSQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDA 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GVR  + +D      +     E  + + +    + +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVRGMNLEDDQKVIAMLVAGDESQSVLTATENGFGKRTPIA 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGKVVAA 802



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 79/262 (30%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       +   +  +    S   +   I                   + T 
Sbjct: 594 IANTHDYILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMF---------PLQGDEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +S  ++       I        +               + A+   EGD L  A    
Sbjct: 645 ILPLSGENRNFPDNHYIFMATSQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ +   +  + I      D +  +L  +
Sbjct: 705 GKHDVMLFSDAGKAVRFDENDVRPMGRTARGVRGMNLEDDQKVIAMLVAGDESQSVLTAT 764

Query: 619 SKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFS 674
             G       +E   + R  KG   ++ S    K+     V   D + ++     L+   
Sbjct: 765 ENGFGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAATLVNENDEIMLITTGGVLIRTR 824

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + ++ EM R  +GV L + ++G
Sbjct: 825 VSEVREMGRATQGVTLIAVEEG 846


>gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 885

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE+++ +        T         
Sbjct: 475 LDEYKELLTVIAELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568]
 gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568]
          Length = 882

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/793 (33%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G
Sbjct: 1   MSD----LAREITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVINGCLAYIDDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYLRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-HQGQPKLLNLKDILQAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVAAMLERAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL     +  +L +  +    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTAIAALIFILENPDRLMEVIREELVAIKEQYNDGRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 ++       G   + ++  +++  V    G + V +   N K++ F   Q+  M
Sbjct: 655 VKKTALTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +  +G     +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLGEGDSVISLIVPRGEGD-ILTVTQNGYGKRTAVTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G+ + +
Sbjct: 774 IKVSERNGQVVGA 786


>gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703]
 gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703]
          Length = 878

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/793 (33%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA ID+  IS+E L+ YI GPDFPT   I+  +  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAA-IINGKRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++  + M+  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKEILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL +A +NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGSVAAMLERAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S ++    I  E+  +KE ++          +         
Sbjct: 475 LDEYKELLTQIAALLFILRSPERLMEVIREELEAIKEQYNDQRRTEITHNSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y L    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWLKVYQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGLNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +D      +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLQDDDRVVSLIVPRGEGD-ILTVTENGYGKRTAINDYPTKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVSERNGNVVGA 786



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 65/169 (38%), Gaps = 17/169 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV  +   +R++   +  +  ++ ++ D +   +       IL ++ +G
Sbjct: 692 NEVMLFSAEGKVVRFSESAVRTMGRTATGVRGINLQDDDRVVSLIVPRGEGDILTVTENG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   +  +     + +  +     N ++V A   D+T ++++++  G       SE
Sbjct: 752 YGKRTAINDYPTKSRATKGVISIKVSERNGNVVGAVQVDTTDQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSS---------------EEKMKLVVKVTGDHVA 662
           +    R   G T ++ +                ++++  VV V G+ +A
Sbjct: 812 VSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDGVVAVDGEELA 860


>gi|328543510|ref|YP_004303619.1| DNA topoisomerase IV subunit A [polymorphum gilvum SL003B-26A1]
 gi|326413254|gb|ADZ70317.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
          Length = 745

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/739 (60%), Positives = 570/739 (77%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    ++ V+LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + LD GA 
Sbjct: 2   IPPGGIEGVNLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGAG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKK AR+VG+VIGK HPHGDQ+VY++LVRLAQ F QRYPLI GQGNFGNIDGDSAAA RY
Sbjct: 62  FKKCARVVGDVIGKYHPHGDQAVYEALVRLAQDFAQRYPLIDGQGNFGNIDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +L G+DEDAVDFR+TY+ ED EP+V P  FPNLLANG+SGIAVGMATSI
Sbjct: 122 TEARLTDIARRLLDGLDEDAVDFRETYDGEDREPIVLPGGFPNLLANGSSGIAVGMATSI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN  E+CEAA  LI NP      LL++I GPDFPTGG++V+    ++E+Y  GRG FR
Sbjct: 182 PPHNAFELCEAAQHLIRNPNADTRALLQFIKGPDFPTGGLLVDDPVGLLETYETGRGSFR 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRARW +E++GRG W +VVTEIPYQVQKSRLIEKIAEL++A+++PLL+DIRDESAEDVRI
Sbjct: 242 VRARWAIEDLGRGQWVVVVTEIPYQVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++R++D  LLMES+F L+D+E+RFPLNMNVLS G+VP VM +  +L+EWL HR+ V
Sbjct: 302 VLVPRSRNVDAALLMESLFKLTDLESRFPLNMNVLSHGKVPMVMGVRQVLREWLDHRKAV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS  R+  I+ R+E+L G L+AYLN+DE+I IIR ED+PK  ++  F LT+ Q +AI
Sbjct: 362 LIRRSQHRLDQIEHRLEVLDGYLVAYLNLDEVIRIIREEDEPKAELMRTFGLTDVQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE +I+ E D L AE++++ +LL S  +QW +I  +I EV + +   T 
Sbjct: 422 LNMRLRSLRKLEEMEIRKEHDKLSAERDELKALLGSEARQWTRIGKDIAEVGKAYGPETP 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LGRRRT F E    D   LQQAMIEKEPITVVIS++GWIR+LK H  DLS+L FK+GD L
Sbjct: 482 LGRRRTGFSEAPGHDVEDLQQAMIEKEPITVVISDKGWIRALKGHQQDLSSLAFKQGDKL 541

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K+A HA TTD+IL+ ST GK +TL A  L  GRGHGE I+L++D+   QD+V+AFV+   
Sbjct: 542 KLAFHAETTDKILVFSTGGKFFTLGADRLPGGRGHGEPIRLMVDMEEGQDVVSAFVHKPG 601

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            KLLV S +   F+V E++++ANTRKGK  L +++  +  L +   GDHVAV+G+NRKLL
Sbjct: 602 RKLLVASDEARGFVVPETDVVANTRKGKQVLNLTAPNEAVLCIAAEGDHVAVIGQNRKLL 661

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F + Q+PEM RG+GVRLQ Y+DG ++D + F   +GLTWIDS+GRS+NRS +DL  W G
Sbjct: 662 VFPLAQVPEMGRGRGVRLQRYRDGHLADAVVFDGAQGLTWIDSSGRSFNRSLDDLADWRG 721

Query: 732 KRGGVGSLVPKGFPRSGKF 750
            RG  G L P GFPRS +F
Sbjct: 722 DRGQAGRLPPTGFPRSNRF 740


>gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
 gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
          Length = 809

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/755 (33%), Positives = 408/755 (54%), Gaps = 29/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V++   +++ Y+ YA+S I  RA+PD+RDG KP+HRRI++AMSE+ L      +KS
Sbjct: 7   KVVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRPHRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+GK HPHGD ++YD++VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEAR
Sbjct: 67  ATIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D VDF   +++   EP V PS+FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 LSRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +I+NP+++ ++L+  I GPDFPTGGII+  RE I E Y  GRG   VRA+
Sbjct: 187 LSEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIIL-GREGIREMYTTGRGSIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+RLIEKIAEL+  K +  + D+RDES  +   ++  
Sbjct: 246 ATIEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++  ++  + M+  F   M  L     PQV+ L  ++  +L H++EV+ RR
Sbjct: 306 LKRDANAHVILNQLYKHTQMQVTFGAIMLALV-ENKPQVLTLREMIYHYLRHQQEVVVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
           + + +   + RV IL+GL IA  ++DE+IA+IR           ++  F LTE Q   IL
Sbjct: 365 TKYELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMKNFGLTEKQAQVIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   LL + +    +L   K  +  I  E+ ++KE F      
Sbjct: 425 DMRLQRLTALERQKIEDEYRELLEKIDYYKRVLGDEKLVFAIIKEELLKIKERFGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544
             RRT         K   +Q +I +E + + ++  G+++ +        K     ++ + 
Sbjct: 482 --RRTRIV---AEVKDFDEQDLIPEEDVVITMTYMGYVKRMPLSSYRSQKRGGKGVTGIT 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDI 602
            +E D ++  L A T   +L  +  G  Y L A  +       +  AI  L+ L   + +
Sbjct: 537 TREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAGRTAKGTAIVNLLPLKPQEKV 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TG 658
                   +     L++V+ +G       SE  ++ + G   + ++S +++  V  V   
Sbjct: 597 NAVIPIKDFGEASYLVMVTKRGLVKKTLLSEYESSRKTGIIAITLTSGDELIGVKLVGKK 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D + +   +   + FS++ +    R  +GV+  +  +G     +      G   +    +
Sbjct: 657 DELILGTSHGMSIRFSVEDVTPTGRTARGVKAITLGEGDEVASMDVTSV-GSDVLVITEK 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        +  RGG G +  +    +G+ + 
Sbjct: 716 GFGKRTPLDEYRIQTRGGRGIITQRVTDTTGRLVG 750



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 6/156 (3%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D ++L ++ G +      ++         +   I L    ++ +  V      +LV++
Sbjct: 655 KKDELILGTSHGMSIRFSVEDVTPTGRTARGV-KAITLGEGDEVASMDVTSVGSDVLVIT 713

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKV-TGDHVAVVGENRKLLIFS 674
            KG        E    TR G+  +     +   ++  +  V  GD + +   +  ++   
Sbjct: 714 EKGFGKRTPLDEYRIQTRGGRGIITQRVTDTTGRLVGLRVVAEGDDIILCTASGMMIRLE 773

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +  I  MSR  +GV L   ++G     +        
Sbjct: 774 VSGISSMSRNTRGVTLMKLEEGDQVSAVAVIRESED 809



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 2/125 (1%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   EGD +           +L+++  G     P          G  I      +
Sbjct: 684 RGVKAITLGEGDEVASMDVTSVGSDVLVITEKGFGKRTPLDEYRIQTRGGRGIITQRVTD 743

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
               +V   V      +++ ++ G    +E S I + +R   G T +K+   +++  V  
Sbjct: 744 TTGRLVGLRVVAEGDDIILCTASGMMIRLEVSGISSMSRNTRGVTLMKLEEGDQVSAVAV 803

Query: 656 VTGDH 660
           +    
Sbjct: 804 IRESE 808


>gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
 gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
          Length = 879

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 394/792 (49%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+ L +A  NIDE+I +I+N   P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +    + LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ +           T         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDVRRTEITAATHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L        G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
          Length = 823

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 415/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   FNEGKILPVDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VYD+LVRLAQ F  RY L++G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+ ++++ VDF   ++ E+ EP V P++FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKITLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+      LIDNPE++I +L+  I GPDFPT GII+  +  I ++Y  GRG   
Sbjct: 182 PPHNLTEVINGISMLIDNPEVTITELMTEIKGPDFPTAGIIL-GKLGIRDAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   I+VTEIPYQV K++LIE IA+L+  K+I  + DIRDES  +   
Sbjct: 241 VRAKTDIEEEK-GRHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + M+  F + M  L     P+V+ L  IL  +L  ++EV
Sbjct: 300 IVIELKRDANPNVILNQLYKHTKMQDTFGIIMLALV-NNKPEVLNLKQILVHYLEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR+    +      ++ F+L+E Q 
Sbjct: 359 IRRRTKFDLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLMNSFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E   L      +  +L   +     I  E+ E+K  +  
Sbjct: 419 QAILDMRLQRLTGLEREKIENEYKELENTIAYLKDVLAKEELVLKIIKEELTEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+ + D     + +I+++ + V +++ G+I+          K     +
Sbjct: 479 -----DRRT---EIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRIAADTYSAQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A+  KE D ++      T + IL  +  G+ Y L    L       + +    L+ +  
Sbjct: 531 QAMTTKEDDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGRTAKGVNLINLLPIET 590

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I        +D T   ++ + +G     + S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQAVITFKEFDKTNYFIMGTRQGLIKKTQVSQYSSIRKNGLNAINLREDDELIGVRM 650

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            TG+  + V  +N   + F+   +  M R   GV+  + +   I+  +   +CEG   + 
Sbjct: 651 TTGESEILVFTKNGYAIRFNERDVRPMGRTATGVKAITLRKEDIAVAMDI-VCEGQDVLV 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +          +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTPVSEYTPHRRGGKGMITYKITEKTGAIVGA 749



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E +   +A +     +K    ++ + +G I+  +           L+A++ +E D L 
Sbjct: 587 PIETNEKIQAVITFKEFDKTNYFIMGTRQGLIKKTQVSQYSSIRKNGLNAINLREDDELI 646

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     IL+ + +G A      ++         +   I L      V   +     
Sbjct: 647 GVRMTTGESEILVFTKNGYAIRFNERDVRPMGRTATGV-KAITLRKEDIAVAMDIVCEGQ 705

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENR 668
            +LV+S  G       SE   + R GK  +     EK   +     V   D + +V  + 
Sbjct: 706 DVLVISENGFGKRTPVSEYTPHRRGGKGMITYKITEKTGAIVGARVVKDEDEMMLVNSSN 765

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             +  ++  I   SR   GV L    +      I 
Sbjct: 766 VAIRLNVSGISTTSRNAMGVTLMRTDEEQKVVAIA 800


>gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435]
 gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus
           haemolyticus JCSC1435]
          Length = 899

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 403/762 (52%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L L  NP+++I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVT+IPYQV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++  + ++T F +NM  L     P+++ L   L E+L H++
Sbjct: 302 VRVVIDVRKDANANVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKQALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +        +  RF L+E 
Sbjct: 361 TVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++ +L   +     +  E+ ++KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +       +   +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T        D    L+  +  G       S      + GK  +    ++++  
Sbjct: 594 DNDETISTMIAVRNLEDEDSYLVFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G+   ++   +  L+ F+   +  + R   GVR  S ++  +   +     +   
Sbjct: 654 VRLTDGNQDILIGTSHASLIRFAETSLRPLGRTAAGVRGISLREDDVVVGLDVAHADSED 713

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G    K   R+G  +
Sbjct: 714 GVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIV 755



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVV 664
           DS   +LVV+  G       SE   + R GK      +   +   + +      + + +V
Sbjct: 710 DSEDGVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLMIV 769

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRS 718
             +  ++   ++ I +  R  +GVRL    D      ++ VI     E  T        
Sbjct: 770 TNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTENG 828



 Score = 45.1 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA + D +L+++ +G     P          G+ I+       N +IV     +    L+
Sbjct: 708 HADSEDGVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLM 767

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV---TGDHV---AVVGEN 667
           +V++ G    +E  +I  N R   G   +K+  ++ +  V KV   T D     A   EN
Sbjct: 768 IVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTEN 827

Query: 668 R 668
            
Sbjct: 828 G 828


>gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88]
 gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 813

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/760 (31%), Positives = 400/760 (52%), Gaps = 18/760 (2%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + ++N+    E  V  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E
Sbjct: 2   NYMNNN----EGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYE 57

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    +++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DG
Sbjct: 58  LGLSPEKSYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDG 117

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTEA+M ++   +L+ ++++ VDF   ++  + EP V PS+FPNLL NG+SGI
Sbjct: 118 DSAAAMRYTEAKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGI 177

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +    LI++P+ +I +L+  I GPDFPT G I+  +  I  +Y
Sbjct: 178 AVGMATNIPPHNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAG-IIMGKSGIRSAY 236

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+  +EE   G + I+VTE+PYQV K++LIE +AEL+  KRI  + DIRD
Sbjct: 237 ETGRGKVIMRAKAEIEEEK-GRYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRD 295

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R  +P++++  ++  + M+  F + M  L     P+V+ L  IL  
Sbjct: 296 ESDREGMRIVVEIKRDSNPNVVLNQLYKHTKMQDTFGVIMIALVD-NEPKVLNLKEILVN 354

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSR 420
           ++  ++E++ RR+ F +     R  IL+GL IA  +IDE+I++IR+           +++
Sbjct: 355 YIEFQKEIIRRRTKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTK 414

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTE Q  AIL++RL+ L  LE  +I+ E + L+   + +  +LN+       I  E+ 
Sbjct: 415 FSLTEKQAQAILDMRLQRLTGLERDKIEEEYNQLMETIKYLRDILNNEDLVLKIIKEELH 474

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+K  +                        +  +       +   +     S K     +
Sbjct: 475 EIKNKYGDERKTEIELNINEISIEDLIEEEEVVVTLTNSGYIKRISSDAYSSQKRGGKGI 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A+  KE D ++      T   +L  +  GK Y L A  +       +      L+ ++ 
Sbjct: 535 QAMTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYEIPEAGRTAKGTNIVNLLPVDA 594

Query: 599 NQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ +              L++ + +G       ++     + G   + +  E+++  V  
Sbjct: 595 NEHVREVIALKKDLEEGYLIIGTKQGLIKKTSLNQFKNIRKNGIIAINLKDEDELLKVKV 654

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             GD  + +V +N   + FS   +  M R   GV+  S +   ++  +   + E    + 
Sbjct: 655 TRGDAEIIIVTQNGYAIRFSEKDVRPMGRNSTGVKAISLRKDDVAVSMDIVV-EDEYVLT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +        L  R G G +  +   ++GK +S+
Sbjct: 714 VTENGFGKRTLASEYTLQNRNGKGLITHRVTDKTGKIVSA 753



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 7/154 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I++++ +G A      ++     +   +   I L  +   V+  +      +L V+  G 
Sbjct: 661 IIIVTQNGYAIRFSEKDVRPMGRNSTGV-KAISLRKDDVAVSMDIVVEDEYVLTVTENGF 719

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQI 678
                 SE     R GK  +     +K   +         D + ++  +   +   +  +
Sbjct: 720 GKRTLASEYTLQNRNGKGLITHRVTDKTGKIVSARVAKDSDELMLINSSNTAIRICVSDV 779

Query: 679 PEMSR-GKGVRLQS-YKDGGISDVICFKICEGLT 710
              +R   GV L   Y++  I  +      E   
Sbjct: 780 SITNRSAMGVTLMRTYEEEKILAIAKISSDEDSE 813


>gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 399/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   LL E  ++  +L S ++    I  E+  V++ F+ +        +         A
Sbjct: 475 AEYKELLEEIAELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V   TG   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
 gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
          Length = 873

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/803 (30%), Positives = 389/803 (48%), Gaps = 62/803 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D+  VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A L L+ NPE SI++L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNETVDACLHLLKNPEASIDELMEIIPAPDFPTAG-IIYGLNGVREGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V EIPYQV K  L+E++AEL+  K++  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 301 MRVVIELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVD-GQPKLCNLRDLVEVFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NIDE I II+N                    
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIEIIKNSPTPPLAKQGLMDKSWDSSL 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLVRAASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT---FCEV 502
           +I  E   ++A    +  +L+  ++    I  E+  VK+ F ++    RR        E+
Sbjct: 480 KIIGEYKEVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQTKLGARRSVIEHNVQEL 539

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
              D  T    ++       V S         +       A   K+ D ++    A+T D
Sbjct: 540 GTEDLITPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            +L  S  G+ Y L    +        G+ I  +  L  N+ I            + S  
Sbjct: 600 WMLCFSNRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTFPSDH 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + ++ G        E     + G   + +   + +       G H V +  +  K +
Sbjct: 660 YIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDGGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  D +  M R  +GVR  + + G     +     E  + + +    Y +  +      
Sbjct: 720 RFDEDDVRPMGRNARGVRGMALEPGQNVIAMLVAEDESQSVLTATENGYGKRTSITEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+G+ +++
Sbjct: 780 HGRGTKGMIAIQQTERNGRVVAA 802



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 5/212 (2%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 + T    ++   +       I        +               + A+   EG
Sbjct: 635 PLQPNEKITVVLPLTGEFRTFPSDHYIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEG 694

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  A        ++L S  GKA      ++     +   ++ +        I      
Sbjct: 695 DHLIGAALTDGKHDVMLFSDGGKAVRFDEDDVRPMGRNARGVRGMALEPGQNVIAMLVAE 754

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVV 664
           D +  +L  +  G       +E   + R  K  + +   E+   VV  T     D + ++
Sbjct: 755 DESQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQQTERNGRVVAATLVRPEDEIMLI 814

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   L+   + +I E+ R  +GV L S  DG
Sbjct: 815 TDRGVLVRTRVSEIRELGRATQGVTLISLDDG 846



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 61/204 (29%), Gaps = 11/204 (5%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
               +  ++  +  VK+         R+              +  A+ + +   ++ S+ 
Sbjct: 656 PSDHYIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDG 715

Query: 528 GWIRSLKSHSVDLSALH---------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           G         V     +             + + + +    +  +L  + +G        
Sbjct: 716 GKAVRFDEDDVRPMGRNARGVRGMALEPGQNVIAMLVAEDESQSVLTATENGYGKRTSIT 775

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK- 637
                    + +  +     N  +V A +     ++++++ +G       SEI    R  
Sbjct: 776 EYTRHGRGTKGMIAIQQTERNGRVVAATLVRPEDEIMLITDRGVLVRTRVSEIRELGRAT 835

Query: 638 -GKTFLKVSSEEKMKLVVKVTGDH 660
            G T + +    ++  + ++  + 
Sbjct: 836 QGVTLISLDDGSQLGGLQRIVEND 859


>gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
 gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
          Length = 883

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/793 (33%), Positives = 394/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G
Sbjct: 1   MSD----LAREITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVINGCLAYIDDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYLRARAEVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ +
Sbjct: 296 SDKDGMRIVVEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-HQGQPKLLNLKDILQAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVGAMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L +  +    I  E+  VKE+++          T         
Sbjct: 475 LDEYKELLTFIAELIFILENPDRLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +   N K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +  +G     +     EG   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLGEGDGVISLIVPRGEGD-ILTVTQNGYGKRTAVTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G+ + +
Sbjct: 774 IKVSERNGQVVGA 786


>gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586]
 gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586]
          Length = 877

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 397/793 (50%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  IS+E L+ +I GPDFPT   I+  +  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVINGCLAYIDDENISVEGLMAHIPGPDFPTAA-IINGKRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++  + M+  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKDILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA +NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGSVAAMLERAGDDAARPEWLEPEFGIHDGKYRLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  ++E ++ +        +         
Sbjct: 475 LDEYKELLTQIAELLFILRSPERLMEVIREELEAIREQYNDARRTEITHNSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SQENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y L    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWLKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +D      +     +G   +      + +        +  R   G + 
Sbjct: 715 GRTATGVRGINLQDDDRVVSLIVPRGDGD-ILTVTQNGFGKRTAVTEYPVKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV  +   +R++   +  +  ++ ++ D +   +       IL ++ +G
Sbjct: 692 NEVMLFSAEGKVVRFSESAVRTMGRTATGVRGINLQDDDRVVSLIVPRGDGDILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                            + +  +     N  +V A   D+  ++++++  G       SE
Sbjct: 752 FGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDTADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSS---------------EEKMKLVVKVTGD 659
           +    R   G T ++ +                ++++  VV V G+
Sbjct: 812 VSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDSVVPVDGE 857


>gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
 gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
          Length = 853

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/786 (33%), Positives = 409/786 (52%), Gaps = 58/786 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+GL   A +KKS
Sbjct: 7   RIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASAPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR
Sbjct: 67  ARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +L+ +D+D VDF+D ++    EPVV P+  PNL+ NG  GIAVGMAT IP HN
Sbjct: 127 LTRLAEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATKIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A+IDNP+IS+++LL+++  PDFPTGG I+     + E+Y  GRG   +RAR
Sbjct: 187 LGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGG-IIYGYSGVKEAYATGRGRILIRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              EE+  G   +V+TEIPYQV KS LIEKIA L+  +RI  + DIRDES  +   V+  
Sbjct: 246 IHEEEIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLRVVLE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +   P ++   ++  +  +  F +NM  L     P+ + L  +++ +L HR EV+ RR
Sbjct: 306 LRKDAVPLVIQNQLYKYTPCQQTFGVNMVALV-NGRPRTLTLKELMRHYLDHRHEVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + F ++  + R  IL+GL IA  ++D +I IIR    P                      
Sbjct: 365 TRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPEQRE 424

Query: 420 ----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      F+LTE Q +AIL LRL  L  LE  +++ E   LL E E++ S+L S  
Sbjct: 425 RLGLPVEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRSILASEP 484

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            +W  I  E+ E+K+ ++ +     RRT              + +IE E + V +S++G 
Sbjct: 485 LRWQIIREELLELKQKYADA-----RRTEI--DYAGGGDFAIEDLIEDEQVVVTLSHQGL 537

Query: 530 IRSLKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+    H         V + A   +E D ++        D +L  +  G+ Y L   ++ 
Sbjct: 538 IKRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIP 597

Query: 582 SGRGHG--EAIQLLIDLNHNQDIVTAFV----------YDSTCKLLVVSSKGNAFIVEES 629
            G       +I+ LI +  +  +               +  T  +L+ + +G     E  
Sbjct: 598 EGSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELE 657

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   +  +  +++   V   G  HV +     +++ F    +  M R  +GV
Sbjct: 658 AFSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPMGRNTRGV 717

Query: 688 RLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R  + + G  +  ++          +  +   Y +        + +RGG G    K  PR
Sbjct: 718 RGIALETGEQVVGMVAVSPEASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITPR 777

Query: 747 SGKFLS 752
           +G+ ++
Sbjct: 778 TGRLIA 783



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 10/244 (4%)

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               + +  +     +   IR + +I               +    +       ++    
Sbjct: 589 YWLRVYDIPEGSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQ 648

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             V  +        ++    + A+ F EGD L  A+       +LL S+ G+       +
Sbjct: 649 GLVKKTELEAFSRPRAD--GIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESD 706

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRK 637
           +     +   ++  I L   + +V            +L +S+ G        E   + R 
Sbjct: 707 VRPMGRNTRGVRG-IALETGEQVVGMVAVSPEASPCILSISANGYGKRTPLEEYPVHRRG 765

Query: 638 GKTF--LKVSSE-EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           GK    +K++    ++  +  V   D + ++ +N  ++   +  I  M R  +GVRL   
Sbjct: 766 GKGVWTMKITPRTGRLIAIKAVQDTDDLMIITQNGLMIRIHVADISRMGRHTQGVRLIQL 825

Query: 693 KDGG 696
           K G 
Sbjct: 826 KPGD 829


>gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6]
 gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6]
          Length = 885

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/803 (30%), Positives = 390/803 (48%), Gaps = 62/803 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SIE+L+E I  PDFPT G I+     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLMKNPEASIEELMEIIPAPDFPTAG-IIYGINGVREGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKVHFEDIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  +L+ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALID-GQPKLCNLKQLLEIFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           EV+ RR+ F ++    R  +L+GL +A  NIDE I  I+N   P                
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIETIKNSPTPPVAKLALMSKSWDSSV 419

Query: 415 -----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLTRAEGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR---TTFCEV 502
           +I  E  +++A+   +  +L    +    I  E+  V++ F +S    RR        E+
Sbjct: 480 KIVGEYKDVMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQSKIGVRRSVVEHNVQEL 539

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
              D  T    ++       + S         K       A   K+ D +     A+T D
Sbjct: 540 GTEDLITPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            +L  S  G+ Y L    +        G+ I  +  L  ++ I            + +  
Sbjct: 600 WMLCFSNRGRVYWLKVWEVPQGGRNSRGKPIVNMFPLQPDEKINVVLPLTGANRSFPADH 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + +++G        +     + G   + +   + +       G H V +  +  K +
Sbjct: 660 YIFMCTARGTVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  + +  + R  +GVR  +  +G     +     E  + + +    Y +  + L    
Sbjct: 720 RFDEEDVRPLGRQARGVRGMALDEGQSVIAMLVAEDETQSVLTATENGYGKRTSILEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+GK +++
Sbjct: 780 HGRGTKGMIAIQQTERNGKVVAA 802



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 5/178 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 669 TVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRFDEEDVRP 728

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++ +        I      D T  +L  +  G        E   + R  K  +
Sbjct: 729 LGRQARGVRGMALDEGQSVIAMLVAEDETQSVLTATENGYGKRTSILEYTRHGRGTKGMI 788

Query: 643 KVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   E+   VV  T     D + ++ +   L+   + +I E+ R  +GV L +  +G
Sbjct: 789 AIQQTERNGKVVAATLVRPNDEIMLITDRGVLVRTRVAEIRELGRATQGVTLIALDEG 846



 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            T  +L  + +G                 + +  +     N  +V A +     ++++++
Sbjct: 756 ETQSVLTATENGYGKRTSILEYTRHGRGTKGMIAIQQTERNGKVVAATLVRPNDEIMLIT 815

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            +G       +EI    R   G T + +    K+  + ++  + 
Sbjct: 816 DRGVLVRTRVAEIRELGRATQGVTLIALDEGAKLSGLQRIVEND 859


>gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 823

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/752 (32%), Positives = 399/752 (53%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   FDEGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VYD+LVRLAQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+G++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    + +IDNP+I+I +L+  I GPDFPT G I+     I  +Y  GRG   
Sbjct: 182 PPHNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAG-IIIGTSGIRSAYETGRGKIL 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EEV  G   I++TEIPYQV KS+LIE +A+L+  K+I  + DIRDES  D   
Sbjct: 241 VRAKAEIEEVK-GRNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++ +  ++  + M+  F + M  L     P+V+ L  +L  +L  + E+
Sbjct: 300 IVIELKRDANPNVTLNQLYKHTRMQDTFGIIMISLV-NNEPKVLNLKQMLVYYLQFQEEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR+    +      +S FSL+E Q 
Sbjct: 359 VTRRTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSEFSLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E + L+   + +  +L + +     I  E+ E+++ +  
Sbjct: 419 QAILDMRLQRLTGLEREKIENEYNELMETIKHLKEILENKELLLKIIKDELIEIRDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 + +             +  +       +   +     S +     + A+  KE 
Sbjct: 479 ERKTEIQISNDDINIEDLIEEQEVVITLTHSGYIKRISADTYSSQRRGGKGIQAMSTKED 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T + IL  +  GK Y L    +       +      LI L  ++ I    
Sbjct: 539 DFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLIPLQGDEQIQAVI 598

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
            +   D     ++ +  G     + S+  +  + G   + +  E+++  V   TG+  + 
Sbjct: 599 SFKEVDKDNYFIMATRCGLIKKTKISQYASIRKNGLNAINLKDEDELIGVRMTTGESEIL 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +  +N   + FS D +    R   GVR  + + G I+  +   + +    +  +   + +
Sbjct: 659 IFTKNGYAIRFSEDDVRPTGRNTTGVRAITLRTGDIAVAMDI-VDKSQDVLVISENGFGK 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + +RGG G +  K   ++G  + +
Sbjct: 718 RTPVSEYTIHRRGGKGIITYKVTEKTGLIVGA 749



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 6/216 (2%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +   + K   +           +I      +        L+A++ K+ D L        
Sbjct: 594 IQAVISFKEVDKDNYFIMATRCGLIKKTKISQYASIRKNGLNAINLKDEDELIGVRMTTG 653

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              IL+ + +G A      ++     +   ++  I L      V   + D +  +LV+S 
Sbjct: 654 ESEILIFTKNGYAIRFSEDDVRPTGRNTTGVR-AITLRTGDIAVAMDIVDKSQDVLVISE 712

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSI 675
            G       SE   + R GK  +     EK   +     V   D + ++  +   +  ++
Sbjct: 713 NGFGKRTPVSEYTIHRRGGKGIITYKVTEKTGLIVGARVVKDEDEMMLINSSNVAIRLNV 772

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
            +I   +R   GV L    +      I    C   T
Sbjct: 773 SEISVTNRNTMGVTLMRTDEEQRVVAIAKINCSDDT 808


>gi|118587954|ref|ZP_01545364.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
 gi|118439576|gb|EAV46207.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
          Length = 750

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/745 (58%), Positives = 573/745 (76%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     +++++L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + 
Sbjct: 1   MGKETTPPPSGIESINLKNALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD G+ FKK AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPLI GQGNFGN+DGD+
Sbjct: 61  LDPGSGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT  A+ +L G+DE+AVDFR+TY+ ED EP+V P  FPNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTDTAKRLLDGLDENAVDFRETYDGEDKEPIVLPGGFPNLLGNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN  E+CEA   LI NP     +LLEYI GPDFPTGG++V  + SI E+Y  
Sbjct: 181 GMATSIPPHNAFELCEACQHLIKNPNAETGELLEYIKGPDFPTGGLLVSDQGSIREAYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FRVRARW VE++GRG W IVVTEIPYQVQKSRLIEKIAEL+ A+++PLL+D+RDES
Sbjct: 241 GRGSFRVRARWEVEDLGRGQWAIVVTEIPYQVQKSRLIEKIAELLTARKLPLLDDVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+RIVL P++R++D ++LMES+F L+D+E RF LNMNVLSMG+VP VM L  +L+EWL
Sbjct: 301 AEDIRIVLVPRSRNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGLKQVLREWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR+EVL RRS +R+  I+ R+E+L+G L+AYLN+DE+I IIR ED+PK  ++  F L++
Sbjct: 361 DHRKEVLIRRSEYRLGQINHRLEVLEGYLVAYLNLDEVIRIIREEDEPKAELMQTFELSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE +I+ E D L AEK+ +  LL S  +QW +I+ EI ++ ++
Sbjct: 421 VQAEAILNMRLRSLRKLEEMEIRKEHDKLSAEKDDLTKLLGSDARQWTKISKEIADISKV 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +   T++G+RRT   E    D   +QQAMIEKEPITV+IS +GWIR++K H  DLS + F
Sbjct: 481 YGPETEIGKRRTDKSEAPETDLIDIQQAMIEKEPITVIISEKGWIRAMKGHQTDLSGVVF 540

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++LHA TTD+ILL ST GK +TL A  L  GRGHGE I+L+++++  QD+V A
Sbjct: 541 KQGDKLKLSLHAETTDKILLFSTGGKFFTLGADRLPGGRGHGEPIRLMVEMDEAQDVVNA 600

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+     LL+ +++   F+V E +++ANTRKGK  L +S+  +  + V+ +GDHVA++G
Sbjct: 601 FVHKPGRNLLLATTEARGFVVSEDDVVANTRKGKQVLNLSAPAEASICVEASGDHVAIIG 660

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRKLL+F + QIP+M RG+GVRLQ Y+DG ISD+  FK  +GLTW DS+GRS+ RS ++
Sbjct: 661 ENRKLLVFPLVQIPQMGRGRGVRLQRYRDGNISDIRVFKGEDGLTWTDSSGRSFTRSLDE 720

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  W G+RG  G L P GFPRS KF
Sbjct: 721 LADWRGERGQAGRLPPTGFPRSNKF 745


>gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000]
 gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 885

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/796 (30%), Positives = 385/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPDATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVREMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++G     +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 788 MIAIQTSERNGKVVAA 803



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   +GD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 840 TLIAVGEG 847


>gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 884

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTIIGELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO]
 gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
 gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
          Length = 823

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T]
 gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T]
          Length = 883

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/796 (30%), Positives = 385/796 (48%), Gaps = 63/796 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +A L L+  P+  IE L++ +  PDFPT G ++     + E YR GRG  
Sbjct: 182 IPPHNLGEIVDACLKLLAEPDTDIEALIDIVQAPDFPTAG-LIYGLAGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E +       I+V E+PYQV K  L E++AEL+  K+I  + +IRDES +  
Sbjct: 241 IMRARTHFEPIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++  +F  + ++  F +NM  L     P+++ L  +L  +L HRR
Sbjct: 301 MRLVIELKRGEMPEVVLNKLFKHTQLQDSFGMNMVALVD-GKPRLLNLKQMLVCFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+    P                
Sbjct: 360 EVVTRRTIFELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSAL 419

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q  AIL LRL+ L  LE+ +I  E  
Sbjct: 420 VEEMLSRALADSYRPEGLDPQYGLQAQGYRLSEAQAQAILELRLQRLTGLEQDKIVGEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++     +  +L   ++    I  E+  ++  F        RR+   E+         +
Sbjct: 480 EVMDVITDLLDILARPERITAIIVEELGAIRNQFGDP-----RRS---ELVMNTAEINIE 531

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+ +          +       A   K+ D +     A+T D +L
Sbjct: 532 DLITPEDMVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVL 591

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S  G+ Y L    +        G+ I  L  L   + I        +D    + + +S
Sbjct: 592 CFSNRGRCYWLKVYEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFDEEHFVFMATS 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           +G       +      + G   + +   + +  V    G   V +  +  K + F+   +
Sbjct: 652 EGTVKKTALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAVRFAETDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R  +GVR  + +DG     +     E  + + +    Y +           RG  G
Sbjct: 712 RPMGRDARGVRGMTLEDGQAVIAMLVAKDESQSVLTATENGYGKRTPVAEYTRHGRGTKG 771

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+G+ + +
Sbjct: 772 MIAIQTSDRNGRLVGA 787



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 5/192 (2%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++  +        +               + A++  +GD L           ++L S 
Sbjct: 640 FDEEHFVFMATSEGTVKKTALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSD 699

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GKA      ++         ++ +   +    I      D +  +L  +  G       
Sbjct: 700 AGKAVRFAETDVRPMGRDARGVRGMTLEDGQAVIAMLVAKDESQSVLTATENGYGKRTPV 759

Query: 629 SEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR- 683
           +E   + R  K  + + + ++   +   V V   D V ++     L+  S++ I EM R 
Sbjct: 760 AEYTRHGRGTKGMIAIQTSDRNGRLVGAVLVEPSDEVMLISTGGVLIRTSVESIREMGRS 819

Query: 684 GKGVRLQSYKDG 695
            +GV L +  +G
Sbjct: 820 TQGVTLINLDEG 831


>gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8]
 gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8]
          Length = 862

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/788 (31%), Positives = 394/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  +L+ NPE ++E+L+E +  PDFPT G I+     + E YR GRG   +R R   
Sbjct: 190 VLDACFSLLKNPETTVEELIELVPAPDFPTAG-IIYGTVGVKEGYRTGRGRVVMRGRTHF 248

Query: 259 EE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+    G   I++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDMDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEIPDVVLNNLYKQTQLQDTFGMNMVALLD-GQPRLLNLKQMLEAFLRHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-------------------- 417
           F ++    R  +L+GL +A  N+DE+IAII+    P                        
Sbjct: 368 FELRKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVEEMLKRA 427

Query: 418 -----------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                             + + L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 428 AMEAARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L +  +    I  E+ E++  F       +RR+   E ++       + +I  + +
Sbjct: 488 LLDILATAARVTAIITDELTEIRRQFGD-----KRRSEIVENAQD---LSLEDLIAPQDV 539

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+         R+ K       A   KE D +     A+T D IL  S  G+ 
Sbjct: 540 VVTLSHTGYIKSQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRV 599

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVE 627
           Y L    +        G+ I  L  L  N+ I        +D    + + +S G      
Sbjct: 600 YWLKVYEVPQGSRTSRGKPIVNLFPLEENEKINAILSVKSFDENHFIFMATSLGTVKKTA 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-K 685
            +E     R G   + +   + +       G + V +V    K + F  D++ +M R  +
Sbjct: 660 LTEFANPRRSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQMGRATR 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR     +      +     +  T + +    Y +           RG  G        
Sbjct: 720 GVRGMKLAEDQQVLSLLIASNDQQTVMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSE 779

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 780 RNGLVVAA 787



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 5/184 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A++  EGD L  A   + ++ ++L+S  GKA       +  
Sbjct: 654 TVKKTALTEFANPRRSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQ 713

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
                  ++ +      Q +      +    ++V +  G       ++   + R   G  
Sbjct: 714 MGRATRGVRGMKLAEDQQVLSLLIASNDQQTVMVATENGYGKRTVLADFRRSGRGTQGVK 773

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGI 697
            + VS    + +  K+    D + ++     L+   + +I E+ R  +GV L +  +G  
Sbjct: 774 AIAVSERNGLVVAAKLVSDEDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLGEGEK 833

Query: 698 SDVI 701
              I
Sbjct: 834 LSGI 837



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
               +   I S+ +  +  +  +A  +  VK+         RR              +  
Sbjct: 626 EENEKINAILSVKSFDENHFIFMATSLGTVKKTALTEFANPRRSGIIAINLDEGDYLIGA 685

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH---------AHTTDRI 563
            +       V++SN G         V       +    +K+A           ++    +
Sbjct: 686 EITNGSNDVVLVSNGGKAVWFDEDEVRQMGRATRGVRGMKLAEDQQVLSLLIASNDQQTV 745

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           ++ + +G        +        + ++ +     N  +V A +     +++++++ G  
Sbjct: 746 MVATENGYGKRTVLADFRRSGRGTQGVKAIAVSERNGLVVAAKLVSDEDEIMLITTGGVL 805

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV--TGDH 660
                SEI    R   G T + +   EK+  + K+  T D 
Sbjct: 806 IRTRVSEIRELGRATQGVTLINLGEGEKLSGIEKIVETDDE 846


>gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
 gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
          Length = 880

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/800 (33%), Positives = 413/800 (51%), Gaps = 67/800 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LALI+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVVDGCLALINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKADIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------- 411
            HRREV+ RR+ F ++    R  IL+ L +A  NIDEII +IRN                
Sbjct: 355 DHRREVVTRRTIFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGW 414

Query: 412 -----------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL LRL  L  LE  +I 
Sbjct: 415 DLGNVASMLERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V+EI+        RRT   E++ A   
Sbjct: 475 DEYKALLEEIAELMHILASTERLMEVIREELEAVREIYGDE-----RRT---EITAAVHD 526

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E + V +SN G+          + +      SA   K+ D ++  L A+T 
Sbjct: 527 IDMEELIAQEDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTH 586

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D IL  ST GK Y L    L   S    G+ I  ++ L   + I        + +   + 
Sbjct: 587 DNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIF 646

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + +  G        +       G   + +  ++ +  V    GD  + +  ++ K++ F+
Sbjct: 647 MATGDGTVKKTSLDQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFN 706

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            D++  M R   GVR     +      +     EG   +      Y +           R
Sbjct: 707 EDKVRAMGRTASGVRGMKLPEDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGR 765

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
              G +  K   R+G  + +
Sbjct: 766 ATQGVVSIKVSERNGPVVGA 785


>gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC]
 gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601]
 gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC]
 gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601]
          Length = 896

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/808 (30%), Positives = 398/808 (49%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 19  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 78

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 79  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 138

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG++GIAVGMAT+
Sbjct: 139 YTEIRLAKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATN 198

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SI++L+E I  PDFPT G I+   + + + YR GRG  
Sbjct: 199 IPPHNLNEVVDACLHLLRNPESSIDELMEIIPAPDFPTAG-IIYGIQGVKDGYRTGRGKV 257

Query: 251 RVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +  
Sbjct: 258 VMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSG 317

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L     P++  L  +++ +L HRR
Sbjct: 318 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPKLCNLKELIEVFLQHRR 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------ 411
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR                     
Sbjct: 377 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQL 436

Query: 412 ---------------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                      +        + L++ Q   IL +RL+ L  LE+
Sbjct: 437 VREMLTRTREDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQ 496

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++A  E +  +L    +    I  E+  +++ F ++    RR T       
Sbjct: 497 DKIVAEYKDVMAVIENLLDILAKPARVSTIIGEELSALRQEFGQTRLGARRSTIE----H 552

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+         R+ K       A   KE D +     
Sbjct: 553 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFI 612

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 613 ANTHDYILCFSNRGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRS 672

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G+H V +  +
Sbjct: 673 FPADRYVFMATSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSD 732

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           + K + F  + +  M R  +GV+    +DG     +     E  + + +    Y +  + 
Sbjct: 733 SGKAVRFDENDVRPMGRNARGVKGMQLEDGQSVIAMLVAEDENQSVLTATENGYGKRTSI 792

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+G+ +++
Sbjct: 793 TEYTRHGRGTKGMIAIQQSERNGRVVAA 820



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G +   
Sbjct: 612 IANTHDYILCFSNRGRLYWLKVWEVPAGSRNSRGRPIVNMF---------PLQEGEKINV 662

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              ++   ++      +        +               + A+   EGD L  A    
Sbjct: 663 VLPLTGEMRSFPADRYVFMATSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTD 722

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++     +   ++ +   +    I      D    +L  +
Sbjct: 723 GEHDVMLFSDSGKAVRFDENDVRPMGRNARGVKGMQLEDGQSVIAMLVAEDENQSVLTAT 782

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G       +E   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 783 ENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGRVVAATLVHADDEIMLITDTGVLVRTR 842

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I E+ R  +GV L S  +G
Sbjct: 843 VSEIRELGRATQGVTLISLDEG 864



 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +L  + +G                 + +  +     N  +V A +  +  ++++++
Sbjct: 774 ENQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGRVVAATLVHADDEIMLIT 833

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             G       SEI    R   G T + +    K+  + ++  + 
Sbjct: 834 DTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLSGLQRIVEND 877


>gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
 gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
          Length = 823

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTISGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
 gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
          Length = 872

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/807 (29%), Positives = 397/807 (49%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +   ++SL   + + YL YA+S I  RA+PD+RDG KPVHRR++  M EM   +  
Sbjct: 2   DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + K AR+VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG+IDGD+AAA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A+ +L  +D++ +DF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTECRLDKIADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+   +L L+ +P+ +I++L++ I  PDFPTGG ++     + E YR GRG  
Sbjct: 182 IPPHNLAEVIRGSLHLLHHPDCTIDELIDIIPAPDFPTGG-LIYGVTGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   EE GR G   I++ E+PYQV K  L+E+IAE +  K++  + DIRDES +  
Sbjct: 241 VMRARTHFEEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+   ++++ ++F  + ++  F +NM  L     P+++ L  +L+ +LAHRR
Sbjct: 301 MRVVIELKRNEVAEVVLNNLFKQTQLQDTFGMNMVALVD-GQPKLLNLKQMLECFLAHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIR                     
Sbjct: 360 EVVTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIARQELMARSWDSSL 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+E Q   IL +RL+ L  LE+ 
Sbjct: 420 VRSMLERTGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E  +++ +  ++  +L   ++    I  E+  V   +++     RR     E+   
Sbjct: 480 RILNEYGDVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDTRRS----EIELN 535

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G+         R+ K       A   KE D +     A
Sbjct: 536 ASDLETEDLITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L   + I            +
Sbjct: 596 NTHDYILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGEEKITVILPLSGENRNF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S+G       ++     + G   + +   + +       G+H V +  + 
Sbjct: 656 PENHYIFMATSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGNHDVMLFSDA 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GV+  + +D      +     E  + + +    + +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVKGMNLEDEQKVIALLVAGDENQSVLTATENGFGKRTPIA 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGKVVAA 802



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 78/262 (29%), Gaps = 14/262 (5%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       +   +  +    S   +   I                   + T 
Sbjct: 594 IANTHDYILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMF---------PLQGEEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +S  ++   +   I        +               + A+   EGD L  A    
Sbjct: 645 ILPLSGENRNFPENHYIFMATSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               ++L S  GKA      ++         ++ +   +  + I      D    +L  +
Sbjct: 705 GNHDVMLFSDAGKAVRFDENDVRPMGRTARGVKGMNLEDEQKVIALLVAGDENQSVLTAT 764

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
             G       +E   + R  K  + +     + + +   +    D + ++     L+   
Sbjct: 765 ENGFGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAATLVSENDEIMLITTGGVLIRTR 824

Query: 675 IDQIPEMSRG-KGVRLQSYKDG 695
           + +I EM R  +GV L S ++G
Sbjct: 825 VSEIREMGRATQGVTLISIEEG 846


>gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
 gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43]
          Length = 849

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/761 (33%), Positives = 406/761 (53%), Gaps = 30/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL    
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE SI +L+  I GPDFPTG   +     I  +Y  GRG  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGA-TIMGHAGIRSAYETGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+ TEIPYQV K++LIE IAEL+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKSEIEEEN-GRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++++  ++  + ++  F + M  L      +V+ L  +L  ++  ++E
Sbjct: 300 RIVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNET-KVLNLKEVLVHYIDFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q
Sbjct: 359 VITRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  + 
Sbjct: 419 SQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   +          + +I++E + + ++  G+I+          +     
Sbjct: 479 DE-----RRTDIEQ---DMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLN 597
           + A+  KE D +       T   +L  +  G+ Y L A  +       +      LI + 
Sbjct: 531 IQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T            L + + +G       +E     + G   + +   +++  V 
Sbjct: 591 ADEKIQTVLTVTDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD +V  V +N   L F+   +  M R   GV+  + KD  I+  +   + E    +
Sbjct: 651 ITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIAVCMDIAVDEEE-LL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +        +  RGGVG +  K   ++GK + +
Sbjct: 710 VISENGFGKRTPVSEYKIQHRGGVGLITYKISEKTGKLVGA 750



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 61/199 (30%), Gaps = 6/199 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ +E D L      +    ++ ++ +G A      ++  
Sbjct: 618 IVKKTHLNEFRNLRKNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRH 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +    I L  +   V   +     +LLV+S  G       SE     R G   +
Sbjct: 678 MGRTA-SGVKAITLKDDDIAVCMDIAVDEEELLVISENGFGKRTPVSEYKIQHRGGVGLI 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +         D + ++  N   +  ++  I + SR   GV L    +   
Sbjct: 737 TYKISEKTGKLVGATVCKVDDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEK 796

Query: 698 SDVICFKICEGLTWIDSAG 716
              I   +      ++   
Sbjct: 797 IVAIAKILKSDDEDLEENE 815


>gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045]
          Length = 893

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G +V  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D        +  RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT         +    + +I +E I + +S+  +I+               
Sbjct: 481 GDE-----RRTEI--QLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +       +   I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V   TG+   ++   +  L+ FS   +  + R   GV+  S ++G     +     E   
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTF----L 642
           A    I L     +V   V DS    ++LVV+  G       SE   + R GK      +
Sbjct: 688 AGVKGISLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATI 747

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
              +   + +      + + VV     ++   +  I +  R  +GVRL    DG     +
Sbjct: 748 TERNGNIVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTV 807

Query: 702 CFKICEGL 709
                E  
Sbjct: 808 AKVNEEDD 815


>gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 809

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/751 (33%), Positives = 406/751 (54%), Gaps = 23/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   S++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES ++   ++  
Sbjct: 246 ATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  TE Q  AIL
Sbjct: 365 TKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT   +    D    +    +           +        +S K     ++ +  +
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTR 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++      T   IL  +  G+ + L A  +  G    +  AI  LI +  ++ I  
Sbjct: 540 EEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITA 599

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D +
Sbjct: 600 TMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEI 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      + 
Sbjct: 660 VLVSSNGYCVVFNENDVRSMGRTAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KRG  G L  K   ++G+ +
Sbjct: 719 KRSEIEEYRKTKRGAKGVLTYKVTDKTGRIV 749



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL         D I+L+S++G        ++ S     + +   + L  
Sbjct: 635 GKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMGRTAQGV-KGMTLED 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVK 655
              IV          LL V+  G     E  E     R  K  L     +   ++  +  
Sbjct: 694 GDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTGRIVDIKM 753

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           V   D + +       +   + QIP   R  +GV+L    DG    V    
Sbjct: 754 VNDEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRI-DGDNIKVSSIA 803


>gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
 gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
          Length = 830

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/765 (34%), Positives = 421/765 (55%), Gaps = 33/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  +      ++   +   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MAEEDVP---RLRERQIDEEMKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L++G GNFG+IDGDS
Sbjct: 58  MTPDKPYKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE++M++++  +++ +++D VDF D Y+  + EP V PS+FPNLL NGTSGIAV
Sbjct: 118 AAAMRYTESKMSKISMELVRDLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+ISI +L+EYI GPDFPTGG I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLALAKNPDISIPELMEYIPGPDFPTGGEIL-GRSGIRKAYST 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  + E   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + ++RD S
Sbjct: 237 GRGSITVRAKTEIVENK-GKQSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSS 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++++ ++F  + ++T F +NM  L     P+V+ L   L+++L
Sbjct: 296 DRNGMNIVIDVRRDANPNVILNNLFKQTALQTSFGINMLALV-NGRPEVLNLKQTLEQYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
           AH+ EV+ RR+ F +   + R  IL+GL IA  +IDEIIA+IR  D     +  ++ RF 
Sbjct: 355 AHQVEVIRRRTQFDLNKAEARAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIERFE 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+ +Q  AIL++RL+ L  LE  +++ E  ++LA   ++ ++L S ++  + I  EI  +
Sbjct: 415 LSYDQAQAILDMRLQRLTGLERDKLEQEYKDVLARIAELRAILASDEKVIDVIQEEILAI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     S +++    + +I ++ I + I++ G+I+          K
Sbjct: 475 KEKFNDE-----RRTVI---SASEEHLEDEDLIPRQNIVITITHNGYIKRLPISTYRAQK 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   + D ++     +T   +L+ +  GKAY L    +       +      
Sbjct: 527 RGGKGVQGMGTNDDDFVQHLFTTNTHHTVLVFTNKGKAYRLKGYEIPELGRTAKGIPAIN 586

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+  +  + I T      +D    L  V+  G A   + S      + G   + +   + 
Sbjct: 587 LLPFDPGETISTVIPIECFDDDSYLFFVTEHGIAKRTKLSAFANIRKGGLFAINLREGDS 646

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V    G+  V +  +    + F    +  M R   GV+  +  +     V    + E
Sbjct: 647 LHGVRLTDGNREVMIGTKQGMAIRFPETDVRLMGRTAGGVKGITLSENDGV-VGMEVVDE 705

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + +    + Y +        +  RGG G        ++G  +S
Sbjct: 706 NQSVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKNGPLVS 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 6/169 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            L A++ +EGDSL           +++ +  G A   P  ++             I L+ 
Sbjct: 635 GLFAINLREGDSLHGVRLTDGNREVMIGTKQGMAIRFPETDVRLMGRTA-GGVKGITLSE 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
           N  +V   V D    +LVV+ KG        E    +R GK      +   +   + L +
Sbjct: 694 NDGVVGMEVVDENQSVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKNGPLVSLKM 753

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               D + +V  N  ++  ++D I    R  +GV L    +G     + 
Sbjct: 754 VADEDDIMIVTANGIIIRTNVDGISTTGRNTQGVTLIRVNEGEEVATVA 802


>gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
 gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
          Length = 876

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 397/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ + ++    R  IL+GL +A  NIDEII +IRN   P            
Sbjct: 355 DHRREVVTRRTIYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPDWLEEQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V+E F  +        +         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELESVREAFGDARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVSEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    G   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITDGQSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 809

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/751 (33%), Positives = 405/751 (53%), Gaps = 23/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  TE Q  AIL
Sbjct: 365 TRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT   +    D    +    +           +        +S K     ++ +  +
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTR 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++      T   IL  +  G+ + L A  +  G    +  AI  LI +  ++ I  
Sbjct: 540 EEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITA 599

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D +
Sbjct: 600 TMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEI 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      + 
Sbjct: 660 VLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KRG  G L  K   ++GK +
Sbjct: 719 KRSEIEEYRKTKRGAKGVLTYKVTDKTGKIV 749



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 6/176 (3%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL         D I+L+S++G        ++       + +   + L  
Sbjct: 635 GKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRVMGRSAQGV-KGMTLED 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
              IV          LL V+  G     E  E     R  K  L     +K   +V +  
Sbjct: 694 GDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTGKIVDIKM 753

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               D + +       +   + Q+P   R  +GV+L     G I      +I    
Sbjct: 754 VNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDTGNIKVSSIARIKAEE 809


>gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
 gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
          Length = 824

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/765 (33%), Positives = 418/765 (54%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++    E N+  V+L   +   +L YA+S I  RAIPD+RDG KPVHRRI++AM ++G
Sbjct: 1   MADTP---ESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  MTPDKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDP 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ +++D +DF+D Y+  + EP V PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  +P+I+I++L+EYI GPDFPT G ++  R  I  +Y  
Sbjct: 178 GMATNIPPHQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAG-LIVGRSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RAR  +E+   G   I+VTE+PYQV K++LIE+IAEL+  KRI  + D+RDES
Sbjct: 237 GRGSITLRARVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++++ +++  + M+T F +N+  L     P+V+ L   LK +L
Sbjct: 297 DRNGMRMVIEVRRDANANVILNNLYKHTAMQTTFGINLLALV-AGQPKVLNLKQALKFYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            H+ EV+ RR++F ++  + R  IL+GL IA  +ID II +IR+       +  ++ +FS
Sbjct: 356 DHQEEVIRRRTAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSEKQAQAILDMRLQRLTGLEREKIEEEYRGLIQLIAELKAVLADEEKVLEIIREELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     + +      + +I +E I + +++ G+I+          K
Sbjct: 476 KERFNDE-----RRTEII--AASVDQIEDEDLIPQESIAITLTHNGYIKRLPISTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  L   T D IL  +  GK Y      +       +   I  
Sbjct: 529 RGGRGVQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPEYGRTAKGIPIVN 588

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++ ++ I T      +     L   + KG +     +E       G   + +  E++
Sbjct: 589 LLEIDKDEWINTMIRVEDFVEDWFLFFTTKKGISKRTPVTEFANIRTNGLIAIHLKEEDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    +  M R   GV+  +   G    V    + E
Sbjct: 649 LISVKLTDGHKDIIIGTKNGMLIRFPETDVRSMGRSATGVKGITL-SGDDEVVGMEILEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +        +  RGG G        ++G  ++
Sbjct: 708 NDDVLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKNGPLVA 752



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L A+H KE D L           I++ + +G     P  ++ S       +   
Sbjct: 632 NIRTNGLIAIHLKEEDELISVKLTDGHKDIIIGTKNGMLIRFPETDVRSMGRSATGV-KG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEK 649
           I L+ + ++V   + +    +L+V+  G     + SE    +R GK      +   +   
Sbjct: 691 ITLSGDDEVVGMEILEENDDVLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKNGP- 749

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V  VTG+  + ++     L+  ++  I  + R   GV+L    D      +     +
Sbjct: 750 LVAVKTVTGEEDIMLITAGGVLIRMAVGDISVLGRNTMGVKLIRLGDEEYVATVAKVEKD 809

Query: 708 GLT 710
              
Sbjct: 810 EEE 812


>gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
 gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
          Length = 808

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/752 (32%), Positives = 387/752 (51%), Gaps = 13/752 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+    
Sbjct: 2   DFGQGKIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++AEL+LQ +D++ VDF   Y+E   EP V P+KFP LL NGTSGIAVGMAT+
Sbjct: 122 YTEVRMSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L LID+P+ +I+ L++ I GPDFPT G ++  ++ I ++Y  GRG  
Sbjct: 182 IPPHNMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAG-LILGQDGIRQAYTTGRGVI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA   +E +  G   I+VTE+PYQV K+RL+EKIA+L+  K+I  +  + DES     
Sbjct: 241 KMRANARIETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  + ++++  ++  + ++  F + M  L     P+++ L  +L  ++AH+ +
Sbjct: 301 RIVIDLRRDANANVILNQLYKHTQLQDSFGVIMLALVD-GKPKILNLKEVLHYYIAHQED 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + ++  + R  IL+GL IA  ++D +I  IR        +  ++S F L+E Q
Sbjct: 360 VITRRTRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISGFKLSEKQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL+ L  LE  +I+ E   +L   E+  ++L    +    I  E++ VK  F 
Sbjct: 420 AQAILDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILADEGRILAIIKDELKAVKAKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
            +        T         A     +       +        R        +  +  KE
Sbjct: 480 DARRTRLTVDTSEIDVEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTA 605
            D ++  L   T   IL  +  G+ Y L A  +       +  AI  L+ L  ++ I   
Sbjct: 540 KDFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAV 599

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                ++    L + + KG        E     + G   + +  ++++  V    G+   
Sbjct: 600 IQVKGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTDGERDM 659

Query: 663 VVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           ++G      ++F  D +  M R  +GV+  S  DG    +    +      +      Y 
Sbjct: 660 ILGTKWGMAIVFGEDDVRAMGRAARGVKGISLNDGDEV-IGMDTLSPNAEVLTVTAEGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +           RGG G +  K   ++G  + 
Sbjct: 719 KRTETSEYRAQNRGGKGLINLKVTEKTGDVIG 750



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 71/191 (37%), Gaps = 6/191 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++     +     H   L+A++  + D L           ++L +  G A      ++ +
Sbjct: 619 IVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRA 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I LN   +++         ++L V+++G     E SE  A  R GK  +
Sbjct: 679 MGRAARGV-KGISLNDGDEVIGMDTLSPNAEVLTVTAEGYGKRTETSEYRAQNRGGKGLI 737

Query: 643 KVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +     + + + L V      + ++     ++  +I  I  +SR  +GV+L S  +  I
Sbjct: 738 NLKVTEKTGDVIGLRVVHPDQELMLITTEGIVIRTNISDISVISRNTQGVKLMSTGENDI 797

Query: 698 SDVICFKICEG 708
              +     + 
Sbjct: 798 VASMAVMDQKN 808


>gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
 gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
          Length = 835

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/754 (33%), Positives = 402/754 (53%), Gaps = 14/754 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++  +GL   
Sbjct: 2   DIFNEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA 
Sbjct: 62  KGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT
Sbjct: 122 RYTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  + LIDNPE+++  L+  I GPDFPTG   +  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGA-TIMGKAGIRAAYETGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA   +EE   G   IVVTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D 
Sbjct: 241 IVVRADAEIEEEN-GRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +P++++  ++  + ++  F + M  L     P+V+ +  IL  ++ +++
Sbjct: 300 MRIVVELKRDANPNVVLNLLYKHTKLQDSFGVIMLALV-NNEPRVLNIKEILSNYIDYQK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F +   + R  IL+GL IA  NIDE+I+IIR+       K  ++ +F+L++ 
Sbjct: 359 EVITRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDK 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I+ E   L+ + E + S+L S ++    I  E+ ++K  +
Sbjct: 419 QATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           S        +                 +       +   +     + +     + A+  K
Sbjct: 479 SDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQAMTTK 538

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVT 604
           E D ++  +   T   +L  +  G+ Y L A  +       +      LI +  ++ I T
Sbjct: 539 EDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPDEKIQT 598

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                   K   L + +  G       SE     + G   L +   +++  V    GD +
Sbjct: 599 VLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDAN 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   + F+   +  M R   GV+  + KD  ++  +   + +G   +  +   +
Sbjct: 659 IMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVAVCMDIAV-DGEELLVISENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        +  RGGVG +  K   ++GK   +
Sbjct: 718 GKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGA 751



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L AL  K+ D L    + +    I++++ +G A      N+ +
Sbjct: 619 IVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRA 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +    I+L  +   V   +     +LLV+S  G       SE     R G   +
Sbjct: 679 MGRTA-SGVKAINLKDDDVAVCMDIAVDGEELLVISENGFGKRTPVSEYKVQNRGGVGLI 737

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
                EK   +         D + ++  +   +  ++  I   +R   GV L    +   
Sbjct: 738 TYKISEKTGKLTGATICKVDDELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEK 797

Query: 698 SDVIC 702
              I 
Sbjct: 798 VVAIA 802


>gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2]
 gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2]
          Length = 854

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 417/765 (54%), Gaps = 33/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N      +    +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MADQN---NSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  MSPDKPYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDM 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +L+ ++++ VDF   Y+ E++EPVV P+++PNLL NG  GIAV
Sbjct: 118 AAAMRYTEARLSKIAMEMLRDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +   ALI+NP+I+  +L++YI GPDFPT G I+  R  I ++Y+ 
Sbjct: 178 GMATNIPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE+G  +  I+V E+PYQV K+RL+EKIAEL+  KRI  + D+RDES
Sbjct: 237 GRGSVTMRAKTTIEEIGNKA-RIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R ++P++++ ++F  + M++ F +NM  +     P+++ L  +L  +L
Sbjct: 296 DRTGMRIVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIV-NNEPKILNLKDVLYYYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+ EV+ RR+ F ++  + R  IL+GL IA  ++DE+I++IR+       +  ++ RFS
Sbjct: 355 KHQIEVIRRRTEFDLKKAEARAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIERFS 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT  Q  AIL++RL+ L  LE  +I++E + L+ +  +   +L +     N I+ E+ E+
Sbjct: 415 LTLEQAQAILDMRLQRLTGLEREKIENEYNELIQKIMEYREILANEHLVLNIISEELNEL 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K  F+       RRT   E++  +++ L + +I +E + + +++ G+I+          K
Sbjct: 475 KGRFAD-----DRRT---EITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQK 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +  +  K+ D ++     ++   +L  +  GK Y + A  +        G  I  
Sbjct: 527 RGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIIN 586

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI +   + I        +     L   +  G        +     + G   + +  ++ 
Sbjct: 587 LIQIEQGESINAVIPIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDA 646

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G    ++       + F    +  M R   GV+  S  +      +     +
Sbjct: 647 LIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMGRSATGVKGISLDESDAVIGMDIVNTD 706

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            L  +    + Y +    +   +  RGG G        ++G  + 
Sbjct: 707 -LDILIVTAKGYGKRTPAVDYRIQSRGGKGIKTINVTDKNGPVVG 750



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 104/323 (32%), Gaps = 19/323 (5%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               EI     +      +      +T      I  L + + R  +         +   E
Sbjct: 481 DRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDE 540

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTTFC------EVSRADKATL 510
                  + +          + +  +   +         R T        E   +  A +
Sbjct: 541 DFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVI 600

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
                 ++      +  G I+              L A++ +E D+L           ++
Sbjct: 601 PIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMI 660

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + +  G +   P  ++ S       +   I L+ +  ++   + ++   +L+V++KG   
Sbjct: 661 IGTAQGMSIRFPESDVRSMGRSATGV-KGISLDESDAVIGMDIVNTDLDILIVTAKGYGK 719

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE 680
                +    +R GK    ++  +K   +  +  V   + + ++  +  L+  S+ +I  
Sbjct: 720 RTPAVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKAEEDLMIITASGTLIRTSMGEIST 779

Query: 681 MSR-GKGVRLQSYKDGGISDVIC 702
           M R  +GVRL + +D      +C
Sbjct: 780 MGRNTQGVRLINIRDDDSVATVC 802



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 104/326 (31%), Gaps = 20/326 (6%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
           ++L    +P+   +  +       R  V   RS  R       ++      + +L I   
Sbjct: 492 SILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNS 551

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
              +        V   +     +         + +L ++E+ +  + +  +         
Sbjct: 552 HHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFV----- 606

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
                +  +   A +   +K+         R+        R D A ++  + + +   ++
Sbjct: 607 -----EDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMII 661

Query: 524 ISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + +G         V         +  +   E D++      +T   IL+++  G     
Sbjct: 662 GTAQGMSIRFPESDVRSMGRSATGVKGISLDESDAVIGMDIVNTDLDILIVTAKGYGKRT 721

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           PA +       G+ I+ +   + N  +V   V  +   L+++++ G        EI    
Sbjct: 722 PAVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKAEEDLMIITASGTLIRTSMGEISTMG 781

Query: 636 RK--GKTFLKVSSEEKMKLVVKVTGD 659
           R   G   + +  ++ +  V +   +
Sbjct: 782 RNTQGVRLINIRDDDSVATVCRANKN 807


>gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
 gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
          Length = 821

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 418/764 (54%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +  +++ +++  + ++T F +N+  L     P+V+ L   L  +L
Sbjct: 297 DRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVD-GEPKVLNLKQCLVHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L + ++    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKEILANEEKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+      +RRT     +   +    + +IE+E I V +++ G+I+          K
Sbjct: 476 KERFND-----KRRTEIV--TAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +     D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNGDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEFGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVSEFDEKLYLFFTTKHGISKRTTLSQFANIRNNGLIALGLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  I   +   + +
Sbjct: 649 LMAVRLTDGTKQIIIGTKNGLLIRFPESDVREMGRTAAGVKGITLTDDDIVVGMEI-LED 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +           RGG G    K    +G+ +
Sbjct: 708 DSHVLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENNGRLV 751



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 7/180 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L        T +I++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALGLREDDELMAVRLTDGTKQIIIGTKNGLLIRFPESDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  +V   + +    +L+V+  G        +    +R GK         +  ++
Sbjct: 691 ITLTDDDIVVGMEILEDDSHVLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENNGRL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICE 707
             V    G+  + ++  +  L+   I+ I    R  +GVRL    +   ++ V   +  +
Sbjct: 751 VTVKATKGEEDLMIITASGVLIRMDIEDISITGRVTQGVRLIRMGEQEHVATVALVEKND 810


>gi|260466877|ref|ZP_05813061.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029379|gb|EEW30671.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 750

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/736 (61%), Positives = 582/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI++ +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIEHRDAPVAKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAED+R+VL 
Sbjct: 254 RWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLVR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+ Q +AILN+
Sbjct: 374 RSKHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARWSLTDTQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L  EK++I++LL S  +QW+ I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLTTEKKQIEALLASDAKQWSTIKWEVTSIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D   KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDPKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  V +TGDH+A+VGENRK+L+F+
Sbjct: 614 LLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLTGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LSDIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N]
 gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N]
          Length = 883

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/791 (31%), Positives = 391/791 (49%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + E  L  + NPE +I++LLE I  PDFPTGG I+     + E YR GRG   +RA+   
Sbjct: 190 VVEGCLYCLRNPECTIDELLEIIPAPDFPTGG-IIYGMVGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G+   IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQLISYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARNWDSSLVREMLARA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDVVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           ++     +  +L   ++    I  E++ +K  FS      RR        E+   D  T 
Sbjct: 488 VMDTIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRSEIELNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 MDMVVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + I        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSDDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  ++ K + F  + +  M R
Sbjct: 668 KTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    +D      +     E  + + +    Y +  +        RG  G +  +
Sbjct: 728 AARGVRGMMLEDSQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 788 TSSRNGRVVGA 798



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 5/178 (2%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 665 TVKKTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRP 724

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  ++ ++  +    I      D +  +L  +  G       +E   + R  K  +
Sbjct: 725 MGRAARGVRGMMLEDSQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGMI 784

Query: 643 KV---SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   S   ++   V V   D + ++     L+   + +I EM R  +GV L S  DG
Sbjct: 785 AIQTSSRNGRVVGAVLVNPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDG 842


>gi|319784192|ref|YP_004143668.1| DNA topoisomerase IV subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170080|gb|ADV13618.1| DNA topoisomerase IV, A subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 750

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/736 (61%), Positives = 585/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLSGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI+N +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIENRDAPVAKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAEDVR+VL 
Sbjct: 254 KWFQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDVRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLEHRRDVLVR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+ Q +AILN+
Sbjct: 374 RSKHRLGEIERRLEILAGYLIAYLNIDEVIRIIREEDEPKQVMMARWSLTDTQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L AEK++I++LL S ++QW  I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLSAEKKQIEALLASNEKQWATIKWEVTNIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D+  KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDAKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  + VTGDH+A+VGENRK+L+F+
Sbjct: 614 LLASHDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCIPVTGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + +IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LAEIPEMGRGKGVRLQKYKDGGLLDLKPFTLESGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217]
 gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217]
          Length = 908

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/815 (32%), Positives = 405/815 (49%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALID P +SIE+L+EYI GPDFPT   I   R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASIN-GRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  +E    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRSKAEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I SE + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ EV E +        RRT   E          + 
Sbjct: 480 LLIVIAGLLLILRSPERLMEVIKEELEEVLEQYGD-----VRRTIINENEIDMSL---ED 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+         ++ +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHTGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y     +++ ++ 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYADDKFIIMATAH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    G D + +     K++ F+     
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                             +  M R   GVR    +DG     +     +G   +      
Sbjct: 712 SETGEVKIDAETGEEIIALRPMGRTATGVRGIKLEDGQKVVSLIVPKGDGA-ILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +           RG  G +  K   R+G  + +
Sbjct: 771 YGKRTELNEYPAKSRGTKGVVSIKVTERNGAVVGA 805


>gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 867

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/787 (30%), Positives = 385/787 (48%), Gaps = 54/787 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +++P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+++P+ SI++L+E +  PDFPT G IV   + + + YR GRG   +RA+   
Sbjct: 190 VVDACQHLLNHPQASIDELIEIVPAPDFPTAG-IVYGVQGVRDGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L+HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALID-GQPKLLNLRELLECFLSHRREVVTRRTL 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------- 414
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRRARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQALMTRAWDSALVRDMLSRA 427

Query: 415 ---------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 QGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKITAEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    IA E+  +K  F                +          
Sbjct: 488 VMAQIADLLDILAKPERIRTIIADELVAIKAEFGDPRRSQIELNATELGTEDLITPQDMV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A+  K+ D ++    A+T D IL  S  G+ Y
Sbjct: 548 VTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILCFSNRGRVY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L   + I        + +   + + +S G       
Sbjct: 608 WLKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFLATSLGTVKKTPL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
                  RKG   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 EAFSRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGKAVRFDENDVRPMGREARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    ++G     +     E  + + +    Y +           RG  G +  +   R
Sbjct: 728 VRGMQLEEGQQVIALLVAGGESQSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSER 787

Query: 747 SGKFLSS 753
           +G+ +++
Sbjct: 788 NGRVVAA 794



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             + A+   +GD L  A        ++L S  GKA      ++         ++ +    
Sbjct: 676 KGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQLEE 735

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVV 654
             Q I        +  +L  +  G       +E   + R  KG   ++ S    ++    
Sbjct: 736 GQQVIALLVAGGESQSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAT 795

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            V  D  + ++     L+   + +I EM R  +GV L S  +G
Sbjct: 796 LVEPDSEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 838


>gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
 gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
          Length = 871

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/785 (32%), Positives = 397/785 (50%), Gaps = 48/785 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+DNPE+S+++++E I GPDFPT   I+  R  I++ YR G+G   
Sbjct: 183 PPHNLTEVVNACIALVDNPELSLDEIMEIIPGPDFPTAA-IINGRAGIIQGYRTGKGRVV 241

Query: 252 VRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E         I++ E+PYQV K+RL+E+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R+   D+++ +++  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIEIKRNEVADVILNNLYAHTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------- 417
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMV 420

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + + L+  Q  AIL LRL  L  LE+ +I  E + 
Sbjct: 421 KSMLERAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL   +++  +L S ++    I  E+ E+K  F          +                
Sbjct: 481 LLILIKELLDILASPERLMQVIRDELLEIKTQFGDERRTEITASQEDLTIEDLITEENVV 540

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       V        ++ +      SA + K+ D +   + A T D +L  S  GK Y
Sbjct: 541 VTLSHQGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLY 600

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEE 628
            L A  L   S    G  I  ++ L   ++I              + + +  G    V  
Sbjct: 601 WLKAYQLPLASRISRGRPIINILPLAEGEEINAMLPVREYQEGFYVFMATRNGTVKKVPL 660

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +        G   + +   +++  V    G   + +  +  K++ F   ++    R  +G
Sbjct: 661 NAFSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRPTGRTARG 720

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           VR    ++      +      G T + +    Y +  +     +  RGG G +  +   R
Sbjct: 721 VRGIRIEEDQAVISLIVAHPNG-TILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTER 779

Query: 747 SGKFL 751
           +GK +
Sbjct: 780 NGKVV 784



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 78/237 (32%), Gaps = 14/237 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E +    V          K   
Sbjct: 601 WLKAYQLPLASRISRGRPIINILPLAEGEEINAMLPVREYQEGFYVFMATRNGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+   E D L        T  I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRPTGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++  I +  +Q +++  V      +L  +  G     +  E   + R G+  + +     
Sbjct: 721 VRG-IRIEEDQAVISLIVAHPNGTILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTER 779

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           + + ++ V     D   ++ +   L+ F + ++  + R  +GVRL +   G +   +
Sbjct: 780 NGKVVRSVQVNDSDEAMLITDKGTLVRFRVSELSIIGRNTQGVRLINVSSGELVVGM 836



 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           +  +      +       +K+     S  +    IA ++ E   +       G R     
Sbjct: 638 REYQEGFYVFMATRNGTVKKVPLNAFSRPRSNGIIAVDLDENDRLVGVDITDGTR----- 692

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
                        M+  +   V+  +   +R     +  +  +  +E  ++   + AH  
Sbjct: 693 -----------DIMLFTDAGKVIRFDESKVRPTGRTARGVRGIRIEEDQAVISLIVAHPN 741

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             IL  +  G                G+ +  +     N  +V +   + + + ++++ K
Sbjct: 742 GTILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTERNGKVVRSVQVNDSDEAMLITDK 801

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
           G       SE+    R   G   + VSS E +  + K+  
Sbjct: 802 GTLVRFRVSELSIIGRNTQGVRLINVSSGELVVGMQKIED 841


>gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68]
 gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68]
          Length = 823

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591]
 gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591]
          Length = 877

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/793 (32%), Positives = 398/793 (50%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID+  IS+E L+E+I GPDFPT   I+  +  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVINGCLAYIDDENISVEGLMEHIPGPDFPTAA-IINGKRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++  ++  + M+  F +NM  L     P++M L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKEILAAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+GL IA +NID II +IR+   P           
Sbjct: 355 VRHRREVVTRRTIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQA 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LT+ Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGSVAAMLERAGDDAARPEWLEPEFGIHDGKYHLTDQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L S ++    I  E+  ++E+++ +        +         
Sbjct: 475 LDEYKELLTQIAELLFILRSPERLMEVIREELVAIRELYNDARRTEITHNSADINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +     +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 SEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y L    L        G  I  L+ L  ++ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWLKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ FS   +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  + +D      +     EG   +      + +        +  R   G + 
Sbjct: 715 GRTATGVRGINLQDDDRVVSLIVPRGEGD-ILTVTQNGFGKRTAVTEYPVKSRATKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVSERNGNVVGA 786



 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 17/166 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + M+      VV  +   +R++   +  +  ++ ++ D +   +       IL ++ +G
Sbjct: 692 NEVMLFSAEGKVVRFSESAVRTMGRTATGVRGINLQDDDRVVSLIVPRGEGDILTVTQNG 751

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                            + +  +     N ++V A   DS  ++++++  G       SE
Sbjct: 752 FGKRTAVTEYPVKSRATKGVISIKVSERNGNVVGAVQVDSADQIMMITDAGTLVRTRVSE 811

Query: 631 IIANTRK--GKTFLKVSSE---------------EKMKLVVKVTGD 659
           +    R   G T ++ + +               +++  VV V G+
Sbjct: 812 VSIVGRNTQGVTLIRTAEDERVVGLQRVAEPVEDDELDSVVPVDGE 857


>gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 864

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/792 (33%), Positives = 415/792 (52%), Gaps = 65/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+   +KK
Sbjct: 6   KEVLHVNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF D Y+  + EP VFP++ PNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMAKLAHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +ALID+P I I +L+E++ GPDFPT   ++     I E+Y  GRG   +RA
Sbjct: 186 NMREVVDACVALIDDPSIGIPQLMEHLPGPDFPTAA-VINGATGIHEAYHTGRGRIYLRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE + G G   +VVTE+PYQV K+RL+EKIAEL+  K++  + ++RDES +D   ++
Sbjct: 245 RSHVETDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMRMV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++ +++  + M+  F +NM  L     P+++ L  +L+ +L HRREV+ 
Sbjct: 305 IELKRGEVPEVILNNLYQHTQMQNVFGINMVALVD-GQPRLLDLKQVLEAFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
           RR+ + ++    R  +L+GL +A  NIDE+IA+I+    P                    
Sbjct: 364 RRTIYDLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDEM 423

Query: 416 -------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                              +    + L++ Q  AIL+LRL  L  LE+ ++ SE   LL 
Sbjct: 424 LARAGAATSRPEDLDAAFGIHADGYYLSDAQAQAILDLRLHRLTGLEQEKVVSEYKELLE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + + +  +L S  +    I  E+ E++E F        RRT   E   +      + +I 
Sbjct: 484 KIDDLLDILGSPDRLMRVIRDELLEMREQFGDE-----RRTEIIE---SRLDLTLEDLIT 535

Query: 517 KEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+         R+ K      SA  FK+ D +   +   T D IL  S+
Sbjct: 536 EEDVVVTLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNA 623
            GKAY L    L        G+ I  L+ L   + I              + + +S G  
Sbjct: 596 RGKAYWLKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVREYLEDLYVFMSTSSGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +   +++  V    G   V ++    K + FS +Q+  M 
Sbjct: 656 KKTPLVDFSRPRSNGIIAVDLRDGDQLVDVAITDGSRDVMLLTSAGKAIRFSEEQVRPMG 715

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +     VI   I +  T + +    Y +        +  RGG G +  
Sbjct: 716 RTACGVRGVRLAEDQR--VISLIIVDEGTVLIATENGYGKRTPPDDFPVHGRGGQGVIAI 773

Query: 742 KGFPRSGKFLSS 753
           +   R+G  + +
Sbjct: 774 QTGGRNGAVVGA 785


>gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
 gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
          Length = 888

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 391/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++          T         
Sbjct: 475 LDEYKELLTIIGELIFILENPERLMEVIREELMAIKEQYNDPRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDKVVSLIIPRGDGD-ILTVTENGYGKRTEVTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032]
 gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus
           SAFR-032]
          Length = 839

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 413/765 (53%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  +T    NV+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQHTP---NVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     FKKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 58  MTSDKPFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  IL+ + +D +D++D Y+  + EP+V P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NPE++ ++L++ I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   IV+ EIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKSNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +  +L+ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRNGMRIVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVD-GQPKVLSLKQCLEYYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ ++ RR+++ ++  + R  IL+GL IA  ++DE+IA+IR        +  ++  +S
Sbjct: 356 EHQKVIIRRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +I  E I + +++ G+I+          K
Sbjct: 476 KERFND-----TRRTEIV--TAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   +  G +     S+       G   L +  E++
Sbjct: 589 LLEVEKGEWINAIIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDE 648

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G+  + +  +   L+ F    + EM R   GV+  +  +  I   +     +
Sbjct: 649 LMAVRLTNGEKQIIIGTKKGMLIRFDETDVREMGRTAAGVKGITLSEDDIVVGMEILEPD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    + Y +   +    +  RGG G    K    +G  ++
Sbjct: 709 -ANVLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPLVA 752



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 8/178 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  ++ D L      +   +I++ +  G        ++        A    
Sbjct: 632 NIRNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---M 650
           I L+ +  +V   + +    +L+V+ KG   +  E E    +R GK        +    +
Sbjct: 691 ITLSEDDIVVGMEILEPDANVLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPL 750

Query: 651 KLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V        + + ++  +  ++  ++  I    R  +GVRL    D      +   
Sbjct: 751 VAVKATNAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALV 808


>gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105]
 gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105]
          Length = 870

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/788 (30%), Positives = 383/788 (48%), Gaps = 55/788 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+ +L  +D++ VDF   Y+  + EP V P++ PNLL NG+SGIAVGMAT++P HN++E
Sbjct: 130 IAQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATNMPPHNLKE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L  ID PE +++ L+E I  PDFPT G I+   + + E YR GRG   +RA+   
Sbjct: 190 VVAACLYAIDAPECTVDDLIELIPAPDFPTAG-IIYGIQGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+    G   I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +D   V+    
Sbjct: 249 EDMDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGIRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKNTQLQDTFGINMVALVD-GQPRLLNLRDLIFYFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------- 415
           F ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 FELRKARDRGHVLEGLAVALANIDEFIAIIKAAPTPPVAKADLVAKSWDSSIVREMLSRT 427

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I +E   
Sbjct: 428 ELGDSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKILNEYKE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++ +   +  +L+  ++    I  E+  +   F+               +          
Sbjct: 488 VIDQIADLLDILSKPERINQIIKDELTSIGNEFADERRSMIEFNATELGTEDLITPQDMV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDTILYFSNAGRVY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVE 627
            L    +        G  I  +  L   + I          D    + + +S G     +
Sbjct: 608 WLKVYEVPQGSRTSRGRPIINMFPLAEGEKITAVLPVKSFEDEDKYVFMATSLGTVKKSK 667

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     ++G   + +   + +       G + V +  ++ K + F  + +  M R  +
Sbjct: 668 LSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDVRAMGRNAR 727

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR  + ++G     +     E  + + +    + +           RG  G +  +   
Sbjct: 728 GVRGMNLEEGQRVIAMLVAESEQQSVLTATENGFGKRTPVSEYTRHGRGTKGMIAIQTSE 787

Query: 746 RSGKFLSS 753
           R+GK +S+
Sbjct: 788 RNGKVVSA 795



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 79/203 (38%), Gaps = 8/203 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +         +     + A++  EGD L  A   + T+ ++L S  GKA      ++ +
Sbjct: 662 TVKKSKLSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDVRA 721

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTR--KGK 639
              +   ++ + +L   Q ++   V +S  + +L  +  G       SE   + R  KG 
Sbjct: 722 MGRNARGVRGM-NLEEGQRVIAMLVAESEQQSVLTATENGFGKRTPVSEYTRHGRGTKGM 780

Query: 640 TFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
             ++ S    K+   V V   D + ++     L+   + +I EM R  +GV L S  +G 
Sbjct: 781 IAIQTSERNGKVVSAVLVNPTDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDEGT 840

Query: 697 -ISDVICFKICEGLTWIDSAGRS 718
            +S +      +     ++    
Sbjct: 841 WLSGLQRIVESDAEDLGETDENG 863


>gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54]
          Length = 889

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/791 (31%), Positives = 386/791 (48%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP  S+++L+E I  PDFPTGG ++     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPACSVDELMEIIPAPDFPTGG-VIYGMSGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQMIDYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F+++    R  +L+GL +A  NID+ IAII+    P        +               
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           +++    +  +L   ++    I  E++ +K  FS      RR        E+   D  T 
Sbjct: 488 IMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 TDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + I        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  +  K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    +D      +     E  + + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEDTQNVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 788 TSSRNGKVVGA 798



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEK 649
           +  +    I      D T  +L  +  G       +E   + R  K  + +     + + 
Sbjct: 736 MLEDTQNVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKV 795

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           +  V+ +  D + ++     L+   + +I EM R  +GV L +  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDG 842



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
              T  +L  + +G     P           + +  +   + N  +V A +   + ++++
Sbjct: 750 GDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKVVGAVLVMPSDEIML 809

Query: 617 VSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++ G       +EI    R   G T + V     +  V +V
Sbjct: 810 ITTGGVLVRTRVAEIREMGRATQGVTLINVDDGSSLSGVRRV 851


>gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica]
          Length = 879

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/798 (32%), Positives = 395/798 (49%), Gaps = 54/798 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG  ++S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MG--SMSD----IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 54

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 55  MSVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 114

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+
Sbjct: 115 VDGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGS 174

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +  LA ID+  ISIE L+++I GPDFPT   I+  R  I 
Sbjct: 175 SGIAVGMATNIPPHNLSEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAA-IINGRRGIQ 233

Query: 241 ESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           E+YR GRG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  + 
Sbjct: 234 EAYRTGRGKIYIRARAEIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGIS 293

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +RDES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  
Sbjct: 294 ALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKD 352

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---- 415
           I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P      
Sbjct: 353 IISAFVCHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAA 412

Query: 416 ---------------------------------VMVSRFSLTENQVDAILNLRLRSLRKL 442
                                            V   ++ LTE Q  AIL+LRL+ L  L
Sbjct: 413 LVAQPWELGNVASMLERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGL 472

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++  E   LL    ++  +L S ++    I  E+  +K  ++ +        T    
Sbjct: 473 EHEKLLDEYRELLTLIGELLFILESPERLMEVIREELLAIKAQYNDARRTELTENTADIN 532

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      +       V         + +      SA   KE D ++  L A+T D 
Sbjct: 533 IEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTHDT 592

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+    + + 
Sbjct: 593 ILCFSSRGRLYWMKVYQLPEASRSARGRPIINLLPLEQDERITAILPVREYEDGLYVFMA 652

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ G        +       G   + ++  +++  V    G + V +     K++ F  D
Sbjct: 653 TASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFEED 712

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +  M R   GVR            +     EG   +      Y +   +    +  R  
Sbjct: 713 AVRAMGRTATGVRGIKLNGKDKVVSLIIPRGEGE-ILTVTENGYGKRTAENEYPIKSRAT 771

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +  K   R+G  + +
Sbjct: 772 QGVISIKVSERNGNVVGA 789


>gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
 gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
          Length = 881

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/804 (32%), Positives = 411/804 (51%), Gaps = 67/804 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA +DN +I+IE+L+E+I GPDFPT   I+  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEHITGPDFPTAA-IINGRRGILDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +R
Sbjct: 240 RTGRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++  +F  + M+  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVAL-HQGQPKLLNLKEIIS 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++ HRREV+ RR+ + ++    R  IL+ L +A  NID +I +IR    P         
Sbjct: 359 AFIRHRREVVTRRTIYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIA 418

Query: 416 -------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                          V   ++ LTE Q  AIL+LRL+ L  LE 
Sbjct: 419 QPWDLGSVSTMLERAGDSNVARPEWLEPQYGVHDGKYYLTEQQAQAILDLRLQKLTGLEH 478

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++  E  +LL +  ++  +L S ++    I  E+  +K+ ++       RRT   E + 
Sbjct: 479 EKLLDEYRDLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDP-----RRTEITENTA 533

Query: 505 ADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALH 556
                  + +I +E + V +S++G+          + +      SA   KE D +   L 
Sbjct: 534 D---INIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLV 590

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDST 611
           A+T D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+  
Sbjct: 591 ANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEG 650

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
             + + ++ G        +       G   + ++  +++  V      + V +   + K+
Sbjct: 651 KFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDLTDSTNEVMLFSADGKV 710

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           + F+ D +  M R   GVR     D      +     +G   +      Y +        
Sbjct: 711 VRFAEDCVRPMGRTATGVRGMKLSDDDKVVSLIIPRGDGD-ILTVTENGYGKRTAQSEYP 769

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              R   G +  K   R+GK + +
Sbjct: 770 TKNRATQGVISIKVSERNGKVVGA 793



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 6/171 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  + A++  EGD L       +T+ ++L S DGK        +         ++ +
Sbjct: 672 RPRSAGIIAVNLNEGDELIGVDLTDSTNEVMLFSADGKVVRFAEDCVRPMGRTATGVRGM 731

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKM 650
             L+ +  +V+  +      +L V+  G      +SE     R   G   +KVS    K+
Sbjct: 732 -KLSDDDKVVSLIIPRGDGDILTVTENGYGKRTAQSEYPTKNRATQGVISIKVSERNGKV 790

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
              ++V   D + ++     L+   + ++  + R  +GV L    +G +  
Sbjct: 791 VGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEGELVV 841


>gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
          Length = 888

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 393/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  I+IE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYVRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVASMLERAGDDAARPEWLEEEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE+++ +        T         
Sbjct: 475 LDEYKELLTVIGELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
 gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
          Length = 873

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/803 (33%), Positives = 415/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT   I+  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAA-IINGRRGIIDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RAR  VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 240 RTGRGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILNLKDIIA 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------- 415
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P         
Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIA 418

Query: 416 ------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                         V   ++ LTE Q  AIL+LRL+ L  LE  
Sbjct: 419 RPWDLGNVAAMLERAGDDAARPEWLEEQYGVHDGQYYLTEQQAQAILDLRLQKLTGLEHE 478

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E  +LL + E++  +L S ++    I  E+  ++E+++ +     RRT   E +  
Sbjct: 479 KLLEEYRDLLKQIEELLYILRSPERLMEVIREELEAIRELYNDA-----RRTEITENTAD 533

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+          + +      SA   KE D ++  L A
Sbjct: 534 ---INIEDLISQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVA 590

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+   
Sbjct: 591 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY 650

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        +       G   + ++  +++  V    G + V +     K++
Sbjct: 651 YVFMATASGTVKKTALQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVV 710

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ D +  M R   GVR     D      +     EG   +      Y +   +     
Sbjct: 711 RFAEDAVRPMGRTATGVRGIRLADEDKVVSLIIPRGEG-HILTVTENGYGKRTAEQEYPT 769

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 770 KSRATQGVISIKVSERNGNVVGA 792


>gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 835

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 423/764 (55%), Gaps = 31/764 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             NT   + +K  ++   +++ +++YA+S I  RA+PD+RDG KPVHRRI++AM+++G+ 
Sbjct: 2   EDNTQSYDKIKQRNISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEVIGK HPHGD +VYDS+VR+AQ F  RY LI G GNFG+IDGD AA
Sbjct: 62  SDKPYKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  +++ ++++ VDF D Y+ E+ EPVV PS+FPN+L NG +GIAVGM
Sbjct: 122 AMRYTEARMSKISMELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           AT+IP HN+ E+ +A +ALIDNP+I+I++ + +YI GPDFPTG  ++  R  I  ++  G
Sbjct: 182 ATNIPPHNLGEVIDATIALIDNPDITIKELMEDYIFGPDFPTGA-LLLGRSGIKSAFETG 240

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA+  +EE+  G   I+++EIPYQV K+ L+EKIA L+  K I  + D+RDES 
Sbjct: 241 RGSVVMRAKVDIEEMKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESN 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R +  ++++  ++ L+ +++ F +NM  L     P+++ L  +L  +  
Sbjct: 301 REGIRIVVELRREVQAEVVLNQLYRLTALQSSFGVNMLALV-NGRPELLNLLQVLSHYRD 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSL 423
           H+ E++ RR+ F ++  + R  IL+GL+IA  +IDE+I+IIR+          +   F L
Sbjct: 360 HQIEIVTRRTQFELKKAEDRAHILQGLMIALDHIDEVISIIRSSKDDPEAITRLNEAFDL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q  A+L+++LR L  L+  ++++E + L      +  +L +  +    I  E+ E+K
Sbjct: 420 TEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILIVDLKDILANHDRLLTIIKDELIEIK 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
             F        RR+   E   AD   L + +I  E I V ++  G+I+            
Sbjct: 480 TKFGD-----DRRSEIVE---ADIDMLDEDLIPVEDIVVTMTMNGYIKRTTVDSFNTQNR 531

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLL 593
               +  +   + D++   +   T D +LL +  GK Y +   N+ S     +   +  L
Sbjct: 532 GGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGFNVPSSSRTSKGIPVVNL 591

Query: 594 IDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           ++L   + + T       D +     V+ +G    VE  E  +  + GK  + +  ++++
Sbjct: 592 LNLTEGETVKTLVKVAKDDESKYAFFVTKQGIVKRVEVQEFESIRQNGKIAITLREDDEL 651

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V    GD  + + G N K + F  +++  M R   GV   +  +G +  +      EG
Sbjct: 652 VGVRMTNGDNEIIIGGSNGKAVRFDENEVRSMGRTASGVIGFNVDEGEVVGIAT--DREG 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    + Y +  +       KRG  G        ++G  +S
Sbjct: 710 QYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKNGNLVS 753



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT 657
           ++V          +L V+ KG     + +E     R  K    V+       +  +  V 
Sbjct: 699 EVVGIATDREGQYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKNGNLVSLRAVN 758

Query: 658 GDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           GD  A++      ++   I  I    R   GVRL +  +      +  
Sbjct: 759 GDEEALIISNEGTVIRTEISNIGIYGRSTIGVRLINVGETDSVSQVAI 806


>gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
 gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
          Length = 866

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/793 (33%), Positives = 417/793 (52%), Gaps = 64/793 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            + + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+   
Sbjct: 3   YLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM++VA  +L  ++++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVRMSKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A +AL+D+PEI ++++++ I GPDFPT   I+  R  I++ YR G+G   
Sbjct: 183 PPHNLTEVINACIALVDDPEIGLDEIMQIIPGPDFPTAA-IINGRAGIIQGYRTGKGRAI 241

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   G   I++TE+PYQV K+RL+E+IAEL+  K+I  +  +RDES +   
Sbjct: 242 IRARTEIETDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    D+++ +++  + M+  F +NM  L     P+ + L  IL+ ++ HRRE
Sbjct: 302 RVVIELKRQEIADVILNNLYTQTQMQNVFGINMVALVD-GQPRTLNLKQILEYFIKHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------ 418
           V+ RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                
Sbjct: 361 VVTRRTLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLV 420

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q  AIL LRL  L  LE+ +I  E + 
Sbjct: 421 KTMLERAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++  +L S ++    I  E  E+K  F        RRT   E   + +    + 
Sbjct: 481 LLKLIRELLEILASPERLMQVIRDEFVEIKTQFGDE-----RRTEIIE---SQEDLTIED 532

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S++G+         ++ +      SA + K+ D +   + A T D +L 
Sbjct: 533 LITEENVVVTLSHQGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLC 592

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSK 620
            S  GK Y L A  L   S    G  I  ++ L   ++I              + + + K
Sbjct: 593 FSNHGKLYWLKAYELPLASRISRGRPIINILPLAEGEEINAMLPVREYLDGYYVFMATKK 652

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
           G    V  +        G   + +  ++ +  V    G   + +  +  K++ F  +++ 
Sbjct: 653 GTVKKVPLNAFSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVR 712

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR    ++      +     +G T + +    Y +  +     +  RGG G 
Sbjct: 713 PMGRTARGVRGIRIEEEQAVISLVVAHPDG-TILTATENGYGKRTSIDEYRVSGRGGQGV 771

Query: 739 LVPKGFPRSGKFL 751
           +  +   R+GK +
Sbjct: 772 ISIQVNERNGKVV 784



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 76/237 (32%), Gaps = 14/237 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--- 534
            ++  +   +     GR       ++  ++      + E      V          K   
Sbjct: 601 WLKAYELPLASRISRGRPIINILPLAEGEEINAMLPVREYLDGYYVFMATKKGTVKKVPL 660

Query: 535 -----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S  + A+   + DSL        +  I+L +  GK        +         
Sbjct: 661 NAFSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVRPMGRTARG 720

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           ++  I +   Q +++  V      +L  +  G        E   + R G+  + +     
Sbjct: 721 VRG-IRIEEEQAVISLVVAHPDGTILTATENGYGKRTSIDEYRVSGRGGQGVISIQVNER 779

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           + + ++ V     D   ++ +   L+ F ++++  + R  +GVRL +   G     +
Sbjct: 780 NGKVVRSVQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEKVVGM 836



 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 2/139 (1%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV  +   +R +   +  +  +  +E  ++   + AH    IL  + +G           
Sbjct: 703 VVRFDENKVRPMGRTARGVRGIRIEEEQAVISLVVAHPDGTILTATENGYGKRTSIDEYR 762

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GK 639
                G+ +  +     N  +V +       + ++++ KG     + +E+    R   G 
Sbjct: 763 VSGRGGQGVISIQVNERNGKVVRSVQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQGV 822

Query: 640 TFLKVSSEEKMKLVVKVTG 658
             + VSS EK+  + K+  
Sbjct: 823 RLINVSSGEKVVGMQKIED 841


>gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
          Length = 819

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/748 (31%), Positives = 402/748 (53%), Gaps = 13/748 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+G+      KKS
Sbjct: 7   NIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKPHKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VYD++VRLAQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 67  ARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +++ +++D VD+R  ++E   EP V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 127 LSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LIDN E  +E L+E+I GPDFPT    +   E I E+Y  GRG  +VRA+
Sbjct: 187 LGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAA-TIMGTEGIKEAYTTGRGRIKVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EEV +G   I++TEIPYQV K+RLIEKIAEL+  K++  + D+RDES  +   ++  
Sbjct: 246 ASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++  ++  + +E  F + M  +     P+V+ L  +L  +L H+++++ RR
Sbjct: 306 LKRDANANVVLNKLYKHTQLEDTFGVIMLAIV-NGEPKVLNLKEVLTHYLDHQKDIITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  N+DE+I +IR  +  +     ++  F+L+E Q  AIL
Sbjct: 365 TQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLMETFTLSEKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +++ E ++L+        +L + +   N I  E+ E+KE +      
Sbjct: 425 DMRLQKLTGLEIEKVEEEYEDLIKLINHFKEILANERLMLNIIKDELIEIKEKYGDERRT 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
              R              +  +       +        +S K     ++AL  +E D ++
Sbjct: 485 EITRAIGEINIEDMITEEEVVITLTHFGYIKRLPADTYKSQKRGGKGIAALTTREEDFVE 544

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVY-- 608
             + + + D +L  +  G+ Y L    +   R   +  AI  LI L+ N+ +        
Sbjct: 545 NLITSSSHDYLLFFTNFGRVYKLNVYEIPEARRQAKGTAIVNLIPLSPNETVAATIPVGR 604

Query: 609 -DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666
              +  L++ +  G     + S+  +  + G   + +  ++++  V     D  + ++  
Sbjct: 605 QFDSKYLVLATKNGIIKKTQLSQFESTRKSGLIAISIREDDELIKVKLTDEDSEIILITA 664

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + F    + +M R   GV+  +         +   + E    +  + + + +  + 
Sbjct: 665 QGMSIRFKEQDVRDMGRSAMGVKGINLSPKDHVVSMEI-VEENKDLLVISEKGFGKRTDT 723

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               L  RGG G        ++G  + +
Sbjct: 724 SEYRLQTRGGKGIKTYNVTGKTGPLVGA 751



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 6/186 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +I      +   +    L A+  +E D L           I+L++  G +      ++  
Sbjct: 619 IIKKTQLSQFESTRKSGLIAISIREDDELIKVKLTDEDSEIILITAQGMSIRFKEQDVRD 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                  +   I+L+    +V+  + +    LLV+S KG     + SE    TR GK   
Sbjct: 679 MGRSAMGV-KGINLSPKDHVVSMEIVEENKDLLVISEKGFGKRTDTSEYRLQTRGGKGIK 737

Query: 643 KV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
                  +   +   +    D V ++     ++  ++  I ++ R  KGV L   ++   
Sbjct: 738 TYNVTGKTGPLVGAKIVTDEDEVLLINNYGTVIRLNVSNISKLGRNTKGVTLMRMEEDQS 797

Query: 698 SDVICF 703
              I  
Sbjct: 798 IITIAL 803


>gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980]
 gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980]
          Length = 823

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDVRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKEDQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGNEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 801 VVTMAAVEPE 810


>gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
 gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
          Length = 816

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/758 (32%), Positives = 410/758 (54%), Gaps = 28/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E VK VS+   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +
Sbjct: 1   MSERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYT
Sbjct: 61  KKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM++++  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG+SGIAVGMAT+IP
Sbjct: 121 EARMSKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L L+ +P+++I +L+EY+ GPDFPTG  I+  R  I ++Y  GRG   +
Sbjct: 181 PHQLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQII-GRGGIRKAYETGRGSITL 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + D+RDES      +
Sbjct: 240 RAKAEIEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++  + ++T F +NM  L     P+V+ L   L+ +L H++ V+
Sbjct: 300 VIEVRRDVSAHVVLNNLYKQTALQTGFGINMLALVD-GQPKVLNLKQCLQHYLDHQKIVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA  ++DE+I +IR           ++++F L+E Q  
Sbjct: 359 RRRTQFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTKFQLSEKQAQ 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I+ E + L+     + ++L   ++    I  E+ E+KE F+  
Sbjct: 419 AILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQKVLQIIRDELLEIKEKFNDY 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT     +   +    + +I +E I V +++RG+I+          +     + 
Sbjct: 479 -----RRTEIV--NGGLETIDDEDLITRENIVVTLTHRGYIKRLPVSTYRSQRRGGRGIQ 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            ++  E D ++  +   T D +L  +  GK Y      +       +   I  L+++  +
Sbjct: 532 GMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRTAKGIPIVNLLNIEKD 591

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I T      +     L   + +G A     S        G   + +   +++  V   
Sbjct: 592 EVINTVIAIEQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLIAIHLHEGDELISVKLT 651

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G  H+ V  +N  L+ F    +  M R   GV+  +   G    V    +      +  
Sbjct: 652 DGHKHIIVGTKNGMLIRFPETDVRSMGRTAAGVKAITLCSGDEV-VGMESLNGDEEILIV 710

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +        +  RGG G        ++G  ++
Sbjct: 711 TRNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGDVVA 748



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 118/396 (29%), Gaps = 20/396 (5%)

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           + +        +    + +  L+     ++      L + +AH + +L           D
Sbjct: 407 MTKFQLSEKQAQAILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQKVLQIIRD 466

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             +EI +     Y   + +   +   D    +      +T      I  L + + R    
Sbjct: 467 ELLEIKEKFN-DYRRTEIVNGGLETIDDEDLITRENIVVTLTHRGYIKRLPVSTYRSQRR 525

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTTFC--- 500
                +  N   +      ++ S          + +  K   +         +       
Sbjct: 526 GGRGIQGMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRTAKGIPIVNL 585

Query: 501 ---EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E        +      ++      + +G  +     S        L A+H  EGD L
Sbjct: 586 LNIEKDEVINTVIAIEQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLIAIHLHEGDEL 645

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ + +G     P  ++ S      A    I L    ++V     +  
Sbjct: 646 ISVKLTDGHKHIIVGTKNGMLIRFPETDVRSMGRTA-AGVKAITLCSGDEVVGMESLNGD 704

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
            ++L+V+  G       SE    +R GK      +   + + + +      + + ++  +
Sbjct: 705 EEILIVTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGDVVAVKTVTGEEDLMLMTAS 764

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  ++  I  M R  +GV+L    +    + + 
Sbjct: 765 GVMIRMAVSDISIMGRNTQGVKLIRLDEENEQEYVA 800


>gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
 gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
          Length = 823

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKEDQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 801 VVTMAAVEPE 810


>gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 849

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/761 (33%), Positives = 406/761 (53%), Gaps = 30/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL    
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE SI +L+  I GPDFPTG   +     I  +Y  GRG  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGA-TIMGHAGIRSAYETGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+ TEIPYQV K++LIE IAEL+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKSEIEEEN-GRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++++  ++  + ++  F + M  L      +V+ L  +L  ++  ++E
Sbjct: 300 RIVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNET-KVLNLKEVLVHYIDFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q
Sbjct: 359 VITRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  + 
Sbjct: 419 SQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   +          + +I++E + + ++  G+I+          +     
Sbjct: 479 DE-----RRTDIEQ---DMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLN 597
           + A+  KE D +       T   +L  +  G+ Y L A  +       +      LI + 
Sbjct: 531 IQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T            L + + +G       +E     + G   + +   +++  V 
Sbjct: 591 ADEKIQTVLTITDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD +V  V +N   L F+   +  M R   GV+  + KD  I+  +   + E    +
Sbjct: 651 ITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIAVCMDIAVDEEE-LL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +        +  RGGVG +  K   ++GK + +
Sbjct: 710 VISENGFGKRTPVSEYKIQHRGGVGLITYKISEKTGKLVGA 750



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L A++ +E D L      +    ++ ++ +G A      ++  
Sbjct: 618 IVKKTHLNEFRNLRKNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRH 677

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +    I L  +   V   +     +LLV+S  G       SE     R G   +
Sbjct: 678 MGRTA-SGVKAITLKDDDIAVCMDIAVDEEELLVISENGFGKRTPVSEYKIQHRGGVGLI 736

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
                EK   +         D + ++  N   +  ++  I + SR   GV L    +   
Sbjct: 737 TYKISEKTGKLVGATVCKVDDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEK 796

Query: 698 SDVIC 702
              I 
Sbjct: 797 IVAIA 801


>gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
 gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
          Length = 883

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/793 (32%), Positives = 395/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA I++  ISIE L+E+I GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLTEVINGCLAYIEDENISIEGLMEHIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++T F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKILGLKEILSAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARS 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WDLGNVSAMLASAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +  ++  +L++  +    I  E+  +++ ++          T         
Sbjct: 475 LDEYKELLVQIAELLFILSNPDRLMEVIREELEAIRDQYNDPRRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL+ S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 ++       G   + ++  +++  V    G D V +     K++ FS + +  M
Sbjct: 655 VKKTALTDFSRPRSAGIIAINLNEGDELIGVDLTDGKDEVMLFSAAGKVVRFSEEAVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +G     +     +G   +      + +           R   G + 
Sbjct: 715 GRTATGVRGIRLGEGDSVVSLIIPRGDGC-ILTVTQNGFGKRTESTEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVSERNGPVIGA 786


>gi|13476904|ref|NP_108473.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
 gi|14027665|dbj|BAB53934.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
          Length = 750

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/736 (61%), Positives = 584/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI++ +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIEHRDAPVSKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAED+R+VL 
Sbjct: 254 KWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLIR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+NQ +AILN+
Sbjct: 374 RSRHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARWSLTDNQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L AEK++I++LL S  +QW+ I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLSAEKKQIEALLASDAKQWSTIKWEVTNIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D   KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDPKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  V + GDH+A+VGENRK+L+F+
Sbjct: 614 LLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLIGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + +IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LSEIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus]
          Length = 878

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/792 (32%), Positives = 398/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFP    ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLGEVIDGCLAYINNEEITIDELMDYIPGPDFPAAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYAQTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   LL E  ++  +L S ++    I  E+  V++ F+ +        +         A
Sbjct: 475 AEYKELLEEIAELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V   TG   + +  +  K++ FS D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4]
          Length = 846

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/796 (32%), Positives = 413/796 (51%), Gaps = 65/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
             + + V  V++   +++ YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+  
Sbjct: 2   EEIAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD  AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  A +ALID+P + I  ++ +I GPDFPT GI+  SR  I E+Y  GRG  
Sbjct: 182 IPPHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSR-GIQEAYLTGRGRI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  VE +   G   I+VTE+PY V K+RL+EKI EL+  K+I  +  +RDES ++ 
Sbjct: 241 FLRARTHVETDEASGRQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R+  P++++  +++ + ++T F +NM  L     PQV+ L   L+ +L HR+
Sbjct: 301 MRMVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVD-GQPQVLNLKLALEAFLRHRQ 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  +L+GL IA  NID +IA+I+    P                
Sbjct: 360 EVVTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGV 419

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  Q  AIL++RL  L  LE+ +I  E  
Sbjct: 420 VIDMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQ 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++    ++  +L + ++    I  E+ E+++ + +      RRT   E+         +
Sbjct: 480 QVIELISELLEILANPERLMAVIREELVEMRQQYGE-----LRRT---EIQYNHVDLRLE 531

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L
Sbjct: 532 DLIQEENVVVTLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLL 591

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ GK Y      L        G+ I  L+ L   + I T      ++    + +V++
Sbjct: 592 CFSSRGKVYWKKVYELPQGTRTARGKPIVNLLPLEEGERINTVLPIREFEEGKYVFMVTA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
            G       +        G   L++   +++       G+  + +     K++ FS  ++
Sbjct: 652 SGVVKKTSLAVFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVIRFSEQKV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R  +GV+           VI   I    T + +    Y +        L  RGG G
Sbjct: 712 RPMGRTARGVKGMELPPEHR--VIALIIARNGTILTATELGYGKRTAIAEYRLQGRGGQG 769

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +  PR+G+ + +
Sbjct: 770 IISIQTTPRNGQVVGA 785



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 7/154 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S+ GK        +         +   ++L     ++   +      +L  +  
Sbjct: 692 QEIMLFSSGGKVIRFSEQKVRPMGRTARGV-KGMELPPEHRVIALIIAR-NGTILTATEL 749

Query: 621 GNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G       +E     R G+  + +     + + +  V     D + ++     L+   + 
Sbjct: 750 GYGKRTAIAEYRLQGRGGQGIISIQTTPRNGQVVGAVQVEEEDEIVLITNRGTLIRTPVC 809

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            I  M R  +GV+L +  +G     +   + +G 
Sbjct: 810 DISLMGRNTQGVKLINLLEGERLVGVERIVEDGE 843



 Score = 44.8 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           Q+ M+      V+  +   +R +   +  +  +       +   + A     IL  +  G
Sbjct: 692 QEIMLFSSGGKVIRFSEQKVRPMGRTARGVKGMELPPEHRVIALIIA-RNGTILTATELG 750

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                           G+ I  +     N  +V A   +   ++++++++G        +
Sbjct: 751 YGKRTAIAEYRLQGRGGQGIISIQTTPRNGQVVGAVQVEEEDEIVLITNRGTLIRTPVCD 810

Query: 631 --IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
             ++    +G   + +   E++  V ++  D  A +
Sbjct: 811 ISLMGRNTQGVKLINLLEGERLVGVERIVEDGEAAI 846


>gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 878

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/801 (32%), Positives = 406/801 (50%), Gaps = 68/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G
Sbjct: 1   MSD----IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +VA  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEVRMAKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L++YI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAA-IINGRRGIQEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDE
Sbjct: 236 GRGKIYIRARAEIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+  +
Sbjct: 296 SDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKDIISAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P           
Sbjct: 355 VCHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       V   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGSVATMLERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +K  +S +     RRT   E +    
Sbjct: 475 LDEYRELLTLIGELLFILENPERLMEVIREELLAIKAQYSDA-----RRTEITENTAD-- 527

Query: 508 ATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+          + +      SA   KE D +   L A+T
Sbjct: 528 -INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANT 586

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 587 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITAILPVREYEEGLYV 646

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G        +       G   + ++  +++  V    G + V +     K++ F
Sbjct: 647 FMATASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRF 706

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           + + +  M R   GVR            +     EG   +      Y +   +    +  
Sbjct: 707 AEEAVRSMGRTATGVRGIKLNGEDKVVSLIIPRGEGE-ILTVTENGYGKRTAENEYPIKS 765

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 766 RATQGVISIKVSERNGNVIGA 786


>gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 835

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/754 (33%), Positives = 402/754 (53%), Gaps = 14/754 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++  +GL   
Sbjct: 2   DIFNEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA 
Sbjct: 62  KGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT
Sbjct: 122 RYTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  + LIDNPE+++  L+  I GPDFPTG   +  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGA-TIMGKAGIRAAYETGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA   +EE   G   IVVTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D 
Sbjct: 241 IVVRADAEIEEEN-GRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +P++++  ++  + ++  F + M  L     P+V+ +  IL  ++ +++
Sbjct: 300 MRIVVELKRDANPNVVLNLLYKHTKLQDSFGVIMLALV-NNEPRVLNIKEILSNYIDYQK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F +   + R  IL+GL IA  NIDE+I+IIR+       K  ++ +F+L++ 
Sbjct: 359 EVITRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDK 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I+ E   L+ + E + S+L S ++    I  E+ ++K  +
Sbjct: 419 QATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           S        +                 +       +   +     + +     + A+  K
Sbjct: 479 SDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQAMTTK 538

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVT 604
           E D ++  +   T   +L  +  G+ Y L A  +       +      LI +  ++ I T
Sbjct: 539 EDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPDEKIQT 598

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
                   K   L + +  G       SE     + G   L +   +++  V    GD +
Sbjct: 599 VLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDAN 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   + F+   +  M R   GV+  + KD  ++  +   + +G   +  +   +
Sbjct: 659 IMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVAVCMDIAV-DGEELLVISENGF 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        +  RGGVG +  K   ++GK   +
Sbjct: 718 GKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGA 751



 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 6/185 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++               L AL  K+ D L    + +    I++++ +G A      N+ +
Sbjct: 619 IVKKTHISEFKNLRKNGLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRA 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                 +    I+L  +   V   +     +LLV+S  G       SE     R G   +
Sbjct: 679 MGRTA-SGVKAINLKDDDVAVCMDIAVDGEELLVISENGFGKRTPVSEYKVQNRGGVGLI 737

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
                EK   +         D + ++  +   +  ++  I   +R   GV L    +   
Sbjct: 738 TYKISEKTGKLTGATICKVDDELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEK 797

Query: 698 SDVIC 702
              I 
Sbjct: 798 VVAIA 802


>gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 871

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/792 (32%), Positives = 399/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMSKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    L  IDN +I+I++L+E+I GPDFPT   ++  R+ I+++Y+ 
Sbjct: 177 GMATNIPPHNLTEVINGCLEYIDNEDITIDELMEFIPGPDFPTAA-LISGRKGIIDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   IVV+EIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKVYMRSKADIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALN-NGQPQLFNLKEMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL+ L  LE  +I 
Sbjct: 415 NLGNVAAMLERAGTDAARPEWLEAQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F           +         A
Sbjct: 475 DEYKTLLDEIAELMIILASTERLMEVIREELIAVRDGFGDERRTEITAASHDIDLEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   KE D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRNARGKPIVNILPLEEGERITAILPVDQFCEDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V   TGD  + +  +  K++ FS D++  M 
Sbjct: 655 KKTPLTQFANVRANGLIAVNLRDDDSLIGVDITTGDSDIMLFSKAGKVVRFSEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     +G   +      Y +        +  R   G +  
Sbjct: 715 RTAAGVRGMKLNDDDQVVSLIVPANDGD-VLTVTQNGYGKRTQLSEYPVKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSDRNGPVVGA 785



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 115/352 (32%), Gaps = 22/352 (6%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
              E     ++         +   + +++   +   +   I ++ + +       S T+ 
Sbjct: 512 FGDERRTEITAASHDIDLEELIAREDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKM 571

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           + +  +   L  +    +  +           +     L S   +   I   +       
Sbjct: 572 KEEDYIERLL--VANTHDNILCFSTRGKTYRLKVYQLPLASRNARGKPIVNIL------- 622

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               + G R T    V +  +       +     TV  +      +++++   L A++ +
Sbjct: 623 --PLEEGERITAILPVDQFCEDKFI--FMATGDGTVKKTPLTQFANVRAN--GLIAVNLR 676

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + DSL           I+L S  GK       + +   G   A    + LN +  +V+  
Sbjct: 677 DDDSLIGVDITTGDSDIMLFSKAGKVVRFS-EDKVRAMGRTAAGVRGMKLNDDDQVVSLI 735

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVA 662
           V  +   +L V+  G     + SE     R   G   +KVS      +  V  V GD + 
Sbjct: 736 VPANDGDVLTVTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRNGPVVGAVQVVEGDEMM 795

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWI 712
           ++ +   L+   + ++ ++ R  +GV L    +   +  +      +    +
Sbjct: 796 MITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDELDETDLV 847


>gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 418/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G ++  +  I  +Y  GRG  
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAG-LILGKSGIRRAYETGRGSV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 IMRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     PQ++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV-NGRPQLINLKQALYHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + ++    R  IL+GL IA  +IDEII IIR  +        + SRF+L+E 
Sbjct: 361 EVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT              + +I +E I + +S+  +I+ L + +         
Sbjct: 481 GD-----DRRTEI--QLGGIDQLEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDL 596
            +  ++  + D +   +   T D++L  +  G+ Y L    +       +   I  +I+L
Sbjct: 534 GVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIEL 593

Query: 597 NHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + ++ I T             L+ V+ KG       S      R GK  +K   ++++  
Sbjct: 594 DQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G+ H+ +      L+ F    +  MSR   GV+    +DG     +     +   
Sbjct: 654 VRLTDGEKHILIGTAQASLIRFKEADVRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQD 713

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 KILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + +  +E   V ++ +G I+        + +     A+ F++ D L          
Sbjct: 602 MIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEK 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSS 619
            IL+ +           ++ +      A    I L    +++   V D     K+LVV+ 
Sbjct: 662 HILIGTAQASLIRFKEADVRAMSRIA-AGVKGIRLRDGDEVIGLDVADDDNQDKILVVTE 720

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG        +   + R G         E+   +  +  V GD  + VV     ++   +
Sbjct: 721 KGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEV 780

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             I    R  +GVRL    +      +     E    
Sbjct: 781 SNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDI 817


>gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
 gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
          Length = 918

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/812 (30%), Positives = 390/812 (48%), Gaps = 72/812 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I        Y     +++ +S G       
Sbjct: 600 WLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ---------- 677
           +        G   + +   +++  V    GD  + +     K++ F   +          
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGN 719

Query: 678 ---------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M RG  GVR    ++G     +     +G   +      Y +
Sbjct: 720 AVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKGDGA-ILTVTENGYGK 778

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+G  + +
Sbjct: 779 RTELSEYPSKSRATKGVVSIKVSERNGAVVGA 810


>gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4]
 gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4]
          Length = 946

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/812 (30%), Positives = 390/812 (48%), Gaps = 72/812 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 28  TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 88  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 266

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 327 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 386 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 445

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 446 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 505

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 506 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVV 565

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 566 VTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 625

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I        Y     +++ +S G       
Sbjct: 626 WLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVKKTAL 685

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ---------- 677
           +        G   + +   +++  V    GD  + +     K++ F   +          
Sbjct: 686 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVSVLDENGN 745

Query: 678 ---------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M RG  GVR    ++G     +     +G   +      Y +
Sbjct: 746 PVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGA-ILTVTENGYGK 804

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+G  + +
Sbjct: 805 RTELSEYPSKSRATKGVVSIKVSERNGAVVGA 836


>gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
 gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
          Length = 885

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/796 (30%), Positives = 384/796 (48%), Gaps = 63/796 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT G I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPDATVDELIELIPAPDFPTAG-IIYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVD-GQPRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  NIDE IAII+    P                        
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVREMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++ +   +  +L   ++    I  E+  ++  F                +          
Sbjct: 488 VMEQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLV 547

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +       +        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 548 VTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLY 607

Query: 574 TLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    +        G  I  +  L+  + I        +D    + + +SKG       
Sbjct: 608 WLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTAL 667

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E     + G   + +   + +       G H V +  +  K + F  + +  M R  +G
Sbjct: 668 TEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG 727

Query: 687 VRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           VR  + ++G     +     E           + + +    Y +           RG  G
Sbjct: 728 VRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKG 787

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 788 MIAIQTSERNGKVVAA 803



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +               + A+   EGD L  A        ++L S  GKA      ++  
Sbjct: 661 TVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVSSKGNAFIVEESEII 632
                  ++ + +L   Q ++   V  +             +L  +  G       SE  
Sbjct: 721 MGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 633 ANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + R  K  + +     + + +   +    D + ++     L+   +D+I EM R  +GV
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGV 839

Query: 688 RLQSYKDG 695
            L +  +G
Sbjct: 840 TLIAVGEG 847


>gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7]
 gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7]
          Length = 944

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/812 (30%), Positives = 390/812 (48%), Gaps = 72/812 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 28  TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 88  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 266

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 327 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 386 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 445

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 446 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 505

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 506 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVV 565

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 566 VTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 625

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I        Y     +++ +S G       
Sbjct: 626 WLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVKKTAL 685

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ---------- 677
           +        G   + +   +++  V    GD  + +     K++ F   +          
Sbjct: 686 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGN 745

Query: 678 ---------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M RG  GVR    ++G     +     +G   +      Y +
Sbjct: 746 PVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGA-ILTVTENGYGK 804

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+G  + +
Sbjct: 805 RTELSEYPSKSRATKGVVSIKVSERNGAVVGA 836


>gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As]
          Length = 868

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/782 (29%), Positives = 382/782 (48%), Gaps = 49/782 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NP  +IE+L+E +  PDFPT G I+     + ++YR GRG   +RAR   
Sbjct: 190 VLDACLHLLRNPGATIEELMERVPAPDFPTAG-IIYGTSGVRDAYRTGRGRVVMRARCHF 248

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    
Sbjct: 249 EDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L     P+++ L  ++  +L+HRRE++ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKQTQLQDTFGVNMVALVD-GQPRLLNLQQMIAAFLSHRREIITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------------- 416
           F ++    R  +L+GL +A  N+D +I +I+    P                        
Sbjct: 368 FDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLSRV 427

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q   IL +RL+ L  LE+ +I  E  +++ + 
Sbjct: 428 EGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVMEQI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  ++  F  +         +              +    
Sbjct: 488 ADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVTISH 547

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
              V        R+ +       A   KE D ++    A+T D +L  S  G+ Y +   
Sbjct: 548 SGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWMKVY 607

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
                     G+ +  L  L   + I T      +D    + + +++G       +  + 
Sbjct: 608 ESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQHYVFMATARGTVKKTPLTAFVN 667

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + +  ++ +       G H V +  +  K + F    +  M R  +GVR   
Sbjct: 668 RRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMGREARGVRGMQ 727

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +       +     E  + + +    Y +  +        RG  G +  +   R+GK +
Sbjct: 728 LEADQSVIALLVAEDETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQTSERNGKVV 787

Query: 752 SS 753
           ++
Sbjct: 788 AA 789



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 8/185 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  + A+   E D L  A        ++L S  GKA      ++         ++ +
Sbjct: 667 NRRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMGREARGVRGM 726

Query: 594 IDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEE 648
             L  +Q ++   V  D T  +L  +  G       +E   + R  K  + +     + +
Sbjct: 727 -QLEADQSVIALLVAEDETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQTSERNGK 785

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKIC 706
            +   +  T D + ++ +   L+   +++I EM R  +GV L +      +  V      
Sbjct: 786 VVAACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEA 845

Query: 707 EGLTW 711
           +    
Sbjct: 846 DDDEL 850


>gi|150396031|ref|YP_001326498.1| DNA topoisomerase IV subunit A [Sinorhizobium medicae WSM419]
 gi|150027546|gb|ABR59663.1| DNA topoisomerase IV, A subunit [Sinorhizobium medicae WSM419]
          Length = 758

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/745 (65%), Positives = 608/745 (81%), Gaps = 8/745 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISI--------EKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+  +              I GPDFPTGG+IVESR S++ESYR 
Sbjct: 192 HNAHELCDAALYLIRHPDAPLEALLFDPANPQRGGIEGPDFPTGGVIVESRTSMMESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWTVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D L  EK +I++LL S  +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D ++L F
Sbjct: 492 FAKATELGKRRSTFADAPEADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTTSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD+LK++  A TTD+IL+ +T GK YTL +  L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDALKVSFPAQTTDKILIFTTGGKVYTLGSDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + VS  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLVVSSTAGNGFVVTESDIVANTRKGKQVMNVSMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGGISD+ CF I EGLTW DSAGR + +++++
Sbjct: 672 ENRKMLVFPLAQVPEMARGKGVRLQRYKDGGISDIRCFSIAEGLTWEDSAGRVFTKTKDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           LL W+G R G G +VPKGFPRSGKF
Sbjct: 732 LLEWMGDRAGAGRVVPKGFPRSGKF 756


>gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
 gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
          Length = 823

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKEDQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTSNITEKNGPLAG 753



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TSNITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICE 707
              +     E
Sbjct: 801 VVTMAAVEPE 810


>gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555]
 gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555]
          Length = 806

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 412/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+     
Sbjct: 2   FDEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+G++++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    + +I+NPE++I +L+  I GPDFPT GIIV     I  +Y  GRG   
Sbjct: 182 PPHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIV-GTSGIKSAYETGRGKII 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  ++E   G   IV+TEIPYQV KS+LIE +A+L+  KRI  + DIRDES  D   
Sbjct: 241 VRAKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++ +  ++  + M+  F + M  L     P+V+ L  +L  +L  + E+
Sbjct: 300 IVVELKRDANANITLNQLYKHTRMQDTFGVIMLTLVD-NEPKVLNLKQMLVHYLKFQEEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           L RR+ F +   + R  IL+GL IA   IDE+I +IR+       +  ++ +F+L+E Q 
Sbjct: 359 LTRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E + L+   + +  +L +     N I  E+ E+++ +  
Sbjct: 419 QAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+  ++     + +IE+E + + +++ G+I+          +     +
Sbjct: 479 E-----RRT---EIQISNDDINIEDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNH 598
            A+  KE D ++      T   IL  +  GK Y L    +       +      L+ L+ 
Sbjct: 531 QAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDG 590

Query: 599 NQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I     +   D     ++ + +G     E ++  +  + G   + +   +++  V  
Sbjct: 591 DEQIQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKM 650

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            TGD  V +  +N   + FS   +    R   GV+  + +   I+  +     +    + 
Sbjct: 651 TTGDSEVLIFTKNGYAIRFSEKDVRPTGRNTTGVKAITLRKKDIAVAMDIASNKED-ILV 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +        + KRGG G +  K   ++G  + +
Sbjct: 710 VSENGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGA 749



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 6/208 (2%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +   + K               ++      +        L+A++ ++GD L        
Sbjct: 594 IQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKMTTG 653

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              +L+ + +G A      ++     +   +   I L      V   +  +   +LVVS 
Sbjct: 654 DSEVLIFTKNGYAIRFSEKDVRPTGRNTTGV-KAITLRKKDIAVAMDIASNKEDILVVSE 712

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSI 675
            G       +E   + R GK  +   S EK   +     V   D + ++  +   +  ++
Sbjct: 713 NGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGARVVKDEDEMMLINSSNVAIRLNV 772

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             I   SR   GV L   ++      I 
Sbjct: 773 SDISTTSRNAMGVTLMRTEEEQRVVAIA 800


>gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
 gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
          Length = 870

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 397/759 (52%), Gaps = 23/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   +I +E L++YI  PDFPTG  I      + +++  GRG   +
Sbjct: 184 HNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  + EV      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEI-EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L     P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALV-NGRPRLLNLKDLIKAFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++     +    ++ RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         A  +  +       +  +     R+     V       ++ D
Sbjct: 481 RKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDED 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            ++    A     +L  +  GK Y L    +  G  + +  AIQ L+++  +  +     
Sbjct: 541 FVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIR 600

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  LL  + KG              + G   + +  ++ +  V    G
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNG 660

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISDVICFKICEGLTWID 713
            + V +   N + + F    +  M R   GV+  +  +     +  +IC K  E  T + 
Sbjct: 661 NNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +     +  RGG G        ++GK ++
Sbjct: 721 VSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/458 (10%), Positives = 125/458 (27%), Gaps = 31/458 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K       +R  +LE +   S     ++   K+     + +   I   S  E +    + 
Sbjct: 365 KYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVE 424

Query: 345 VLSMGRVP----QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +           ++      +++ +A+  E+L           D  +EI           
Sbjct: 425 MRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDERKTD 484

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +   N +          +++         +   R +    +     ++  ++ +  
Sbjct: 485 IVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDEDFVEY 544

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK-ATLQQAMIE 516
                                ++  +         GR       +   DK     +    
Sbjct: 545 IYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIRVKKL 604

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR--ILLLSTDGKAYT 574
                 + S+     + K          +       +       D   I +  T+G    
Sbjct: 605 TTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNGNNEV 664

Query: 575 LPAGNLLSGRGHGEA------------IQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSK 620
           + A          E+              + +D ++  ++V         K  +LVVS +
Sbjct: 665 IIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLVVSEQ 724

Query: 621 GNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVV-KVTGDHVAVVGENRKLLIFSID 676
           G        +     R GK    + ++ +  K+  +      + + ++ ++   +   + 
Sbjct: 725 GYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVA 784

Query: 677 QIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTW 711
            +  + R  +GVRL +   ++  I+ V           
Sbjct: 785 DLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEI 822


>gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1]
 gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1]
          Length = 919

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/812 (30%), Positives = 388/812 (47%), Gaps = 72/812 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L++YI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALAEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +    + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +       A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L   + I        Y     +++ +S G       
Sbjct: 600 WLKVYQLPLASRTSRGRPIVNLLPLADGERITAILPVREYAEDKYIIMATSNGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ---------- 677
           +        G   + +   +++  V    GD  + +     K++ F   +          
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGN 719

Query: 678 ---------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  M RG  GVR    ++G     +     +G   +      Y +
Sbjct: 720 PVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKDDGA-ILTVTENGYGK 778

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+G  + +
Sbjct: 779 RTELSEYPSKSRATKGVVSIKVSERNGAVVGA 810


>gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
 gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
          Length = 877

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 397/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I+N EI+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L+    PQ+  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALN-NGQPQLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 DLGNVAAMLERAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E+  V++ F  +        +         A
Sbjct: 475 DEYKALLDEIAELMHILASTERLMEVIREELETVRDAFGDARRTEITAASHDIDMEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G  
Sbjct: 595 RGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M 
Sbjct: 655 KKTSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D      +     EG   +      Y +           R   G +  
Sbjct: 715 RTAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGPVVGA 785


>gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 821

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 420/764 (54%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MNEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L     P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD-GQPKVLNLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT     +   +    + +IE+E I V +++ G+I+          K
Sbjct: 476 KERFNDE-----RRTEIV--TAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +       +   I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +++   L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  +   +   + E
Sbjct: 649 LMGVRLTDGTKQMIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEI-LEE 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +    + Y +           RGG G    K    +G+ +
Sbjct: 708 ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLV 751



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 6/176 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  L AL  +E D L        T ++++ + +G     P  ++        A    
Sbjct: 632 NIRNNGLIALSLREDDELMGVRLTDGTKQMIIGTKNGLLIRFPETDVREMGRTA-AGVKG 690

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           I L  +  +V   + +    +L+V+ KG        E    +R GK         +  ++
Sbjct: 691 ITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQL 750

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             V    G+  + ++  +  L+   I+ I    R  +GVRL    +      +   
Sbjct: 751 VTVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
 gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
          Length = 892

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 392/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARGEVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVAAMLERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE ++ +        T         
Sbjct: 475 LDEYKELLTAIAELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1]
 gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1]
          Length = 839

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 413/760 (54%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                NVK +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    
Sbjct: 3   ETPRSNVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  I++ +++D +D+RD Y+  + EP+V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 123 YTEARMSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H + E+ +  LAL  +PEI+I++L++YI GPDFPT G+IV  R  I  +Y  G+G  
Sbjct: 183 IPPHQLGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIV-GRSGIRRAYESGKGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +E    G   I+V EIPYQV K++LIEKIA+L+  K+I  + D+RDES  +  
Sbjct: 242 TMRAKVRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  + ++L+ +++  + ++T F +N+  L     P+V+ L   L  +L H++ 
Sbjct: 302 RIVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVD-GQPKVLNLKQCLYYYLEHQKV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  +IDEIIA+IR        +  ++  FSL+E Q
Sbjct: 361 VIRRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLMENFSLSEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   L+    ++ ++L   ++    I  E+ E+KE F+
Sbjct: 421 AQAILDMRLQRLTGLERDKIENEYQELVKLIAELKAILADEEKVLEIIREELNEIKERFN 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     +   +    + +I +E I + +++ G+I+          K     
Sbjct: 481 DE-----RRTEIV--AGGIEQIEDEDLIPRENIILTLTHNGYIKRLPVSTYRSQKRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  L   T D IL  +  GKA+      +       +   I  ++ ++
Sbjct: 534 IQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKAFKAKGYEIPEFSRTAKGIPIINMLGVD 593

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +     L   + +G +     S+       G   + +   +++  V 
Sbjct: 594 KGEWVNAMIRIEEFVDDWYLFFTTKQGISKRTPVSDFANIRTNGLIAINLRENDELISVK 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +   L+ F    +  M R   GV+  +     I   +   + E    +
Sbjct: 654 LTDGSKDIIIGTQKGMLIRFPETDVRSMGRTATGVKGINLDSEDIVVGMEI-LEEKDDVL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +        +  RGG G        R+G+ +S
Sbjct: 713 VVTEKGFGKRTPAEEYRIQTRGGKGLKTCNITDRNGELIS 752



 Score = 84.1 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 21/269 (7%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
               +  +         + +  +    S   +   I   +           +        
Sbjct: 551 TSTHDTILFFTNKGKAFKAKGYEIPEFSRTAKGIPIINMLGV------DKGEWVNAMIRI 604

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            E                +   V              +  L A++ +E D L        
Sbjct: 605 EEFVDDWYLFFTTKQGISKRTPVSDFAN-------IRTNGLIAINLRENDELISVKLTDG 657

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           +  I++ +  G     P  ++ S       +   I+L+    +V   + +    +LVV+ 
Sbjct: 658 SKDIIIGTQKGMLIRFPETDVRSMGRTATGV-KGINLDSEDIVVGMEILEEKDDVLVVTE 716

Query: 620 KGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           KG        E    TR GK      +   +  ++  V  VTG+  + ++  +  L+   
Sbjct: 717 KGFGKRTPAEEYRIQTRGGKGLKTCNITDRNG-ELISVKAVTGEEDLMLITAHGVLIRMD 775

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++ I    R  +GV+L    +      + 
Sbjct: 776 VNDISITGRNTQGVKLIRLDENSSVATVA 804


>gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
 gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
          Length = 823

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    +      + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKGNQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKGNQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503]
 gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7]
 gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
 gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503]
 gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
          Length = 870

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 397/759 (52%), Gaps = 23/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   +I +E L++YI  PDFPTG  I      + +++  GRG   +
Sbjct: 184 HNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  + EV      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEI-EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L     P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALV-NGRPRLLNLKDLIKAFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++     +    ++ RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         A  +  +       +  +     R+     V       ++ D
Sbjct: 481 RKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDED 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            ++    A     +L  +  GK Y L    +  G  + +  AIQ L+++  +  +     
Sbjct: 541 FVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIR 600

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  LL  + KG              + G   + +  ++ +  V    G
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNG 660

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISDVICFKICEGLTWID 713
            + V +   N + + F    +  M R   GV+  +  +     +  +IC K  E  T + 
Sbjct: 661 NNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +     +  RGG G        ++GK ++
Sbjct: 721 VSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/458 (10%), Positives = 125/458 (27%), Gaps = 31/458 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K       +R  +LE +   S     ++   K+     + +   I   S  E +    + 
Sbjct: 365 KYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVE 424

Query: 345 VLSMGRVP----QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +           ++      +++ +A+  E+L           D  +EI           
Sbjct: 425 MRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDERKTD 484

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +   N +          +++         +   R +    +     ++  ++ +  
Sbjct: 485 IVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDEDFVEY 544

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK-ATLQQAMIE 516
                                ++  +         GR       +   DK     +    
Sbjct: 545 IYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIRVKKL 604

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR--ILLLSTDGKAYT 574
                 + S+     + K          +       +       D   I +  T+G    
Sbjct: 605 TTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNGNNEV 664

Query: 575 LPAGNLLSGRGHGEA------------IQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSK 620
           + A          E+              + +D ++  ++V         K  +LVVS +
Sbjct: 665 IIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLVVSEQ 724

Query: 621 GNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVV-KVTGDHVAVVGENRKLLIFSID 676
           G        +     R GK    + ++ +  K+  +      + + ++ ++   +   + 
Sbjct: 725 GYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVA 784

Query: 677 QIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTW 711
            +  + R  +GVRL +   ++  I+ V           
Sbjct: 785 DLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEI 822


>gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
 gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
          Length = 834

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/770 (33%), Positives = 416/770 (54%), Gaps = 38/770 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +N S         +K   +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAEENFS--------QIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYA 52

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+G+      KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 53  MSELGMAPDKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGS 112

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG 
Sbjct: 113 IDGDMAAAMRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGV 172

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I 
Sbjct: 173 SGIAVGMATNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIR 231

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA+  +EE    +  IVV EIPYQV K+RL+EKIAEL+  KRI  + D
Sbjct: 232 QAYRTGRGSVTMRAKATIEENNNKA-RIVVHEIPYQVNKARLVEKIAELVREKRIDGITD 290

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R ++P++++ +++  + M++ F +NM  +     P+++ L  +
Sbjct: 291 LRDESDRNGMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIV-NNEPKILNLRDV 349

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +L H+  V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR        +  +
Sbjct: 350 LFHYLEHQVTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGL 409

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L+  Q  AIL++RL+ L  LE  +I++E   LLA   ++  +L +       I  
Sbjct: 410 MERFGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIIND 469

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++E+KE F+       RRT   E++  + + L + +I +E + + I++ G+I+      
Sbjct: 470 ELQEIKERFADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANT 521

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +  +  K  D ++     ++   ++  +  GKAY L A  +        G
Sbjct: 522 YRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARG 581

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  LI +   + I        +DS   L   + +G        + +   + G   + +
Sbjct: 582 TPIINLIQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINL 641

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V    G   + +       + F    +  M R   GV+  +  D     +  
Sbjct: 642 REDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGVKGITLDDNDEV-IGM 700

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + L  +    + Y +           RGG G        ++G  ++
Sbjct: 701 DVVDQELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVA 750



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +     + +      + +G ++              L A++ +E DSL
Sbjct: 588 IQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       +   I L+ N +++   V D  
Sbjct: 648 IEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGV-KGITLDDNDEVIGMDVVDQE 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGEN 667
             +L+V++KG       S+  + TR GK    + ++ +    + +KV  + + + ++  +
Sbjct: 707 LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVC 802



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 110/386 (28%), Gaps = 7/386 (1%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRI---VLFPKNRSLDPDLLMESIFMLSDME 336
              ++++  L   K     +++    AE   I            D    ++  F      
Sbjct: 425 DMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKERFADERRT 484

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
                  ++L    +P+   +  I       R      RS  R       ++      + 
Sbjct: 485 EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSEDFVE 544

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +L +      +            +               + +L ++E+ +  + +  +  
Sbjct: 545 HLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVIPVEN 604

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                     + +    +   E               R   +  EV   D    Q+ ++ 
Sbjct: 605 FDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQ--QEIIMG 662

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      +RS+   +  +  +   + D +           IL+++T G     P
Sbjct: 663 TAQGMSIRFKESDVRSMGRSATGVKGITLDDNDEVIGMDVVDQELDILIVTTKGYGKRTP 722

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A +  S    G+ I+ +     N  +V   V  S   L+++++ G         I    R
Sbjct: 723 ASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITASGTIIRTSMEGISTMGR 782

Query: 637 --KGKTFLKVSSEEKMKLVVKVTGDH 660
             +G   + +  ++ +  V +     
Sbjct: 783 YAQGVKLINIREDDAVGTVCRADKSD 808


>gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10]
 gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10]
          Length = 834

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/770 (33%), Positives = 416/770 (54%), Gaps = 38/770 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +N S         +K   +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAEENFS--------QIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYA 52

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+G+      KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 53  MSELGMAPDKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGS 112

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG 
Sbjct: 113 IDGDMAAAMRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGV 172

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I 
Sbjct: 173 SGIAVGMATNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIR 231

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA+  +EE    +  IVV EIPYQV K+RL+EKIAEL+  KRI  + D
Sbjct: 232 QAYRTGRGSVTMRAKATIEENNNKA-RIVVHEIPYQVNKARLVEKIAELVREKRIDGITD 290

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R ++P++++ +++  + M++ F +NM  +     P+++ L  +
Sbjct: 291 LRDESDRNGMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIV-NNEPKILNLRDV 349

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +L H+  V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR        +  +
Sbjct: 350 LFHYLEHQVTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGL 409

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L+  Q  AIL++RL+ L  LE  +I++E   LLA   ++  +L +       I  
Sbjct: 410 MERFGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIIND 469

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++E+KE F+       RRT   E++  + + L + +I +E + + I++ G+I+      
Sbjct: 470 ELQEIKERFADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANT 521

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +  +  K  D ++     ++   ++  +  GKAY L A  +        G
Sbjct: 522 YRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARG 581

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  LI +   + I        +DS   L   + +G        + +   + G   + +
Sbjct: 582 TPIINLIQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINL 641

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V    G   + +       + F    +  M R   GV+  +  D     +  
Sbjct: 642 REDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGVKGITLDDNDEV-IGM 700

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + L  +    + Y +           RGG G        ++G  ++
Sbjct: 701 DVVDQELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVA 750



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +     + +      + +G ++              L A++ +E DSL
Sbjct: 588 IQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       +   I L+ N +++   V D  
Sbjct: 648 IEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGV-KGITLDDNDEVIGMDVVDQE 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGEN 667
             +L+V++KG       S+  + TR GK    + ++ +    + +KV  + + + ++  +
Sbjct: 707 LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVC 802



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 110/386 (28%), Gaps = 7/386 (1%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRI---VLFPKNRSLDPDLLMESIFMLSDME 336
              ++++  L   K     +++    AE   I            D    ++  F      
Sbjct: 425 DMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKERFADERRT 484

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
                  ++L    +P+   +  I       R      RS  R       ++      + 
Sbjct: 485 EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSEDFVE 544

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +L +      +            +               + +L ++E+ +  + +  +  
Sbjct: 545 HLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVIPVEN 604

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                     + +    +   E               R   +  EV   D    Q+ ++ 
Sbjct: 605 FDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQ--QEIIMG 662

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      +RS+   +  +  +   + D +           IL+++T G     P
Sbjct: 663 TAQGMSIRFKESDVRSMGRSATGVKGITLDDNDEVIGMDVVDQELDILIVTTKGYGKRTP 722

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A +  S    G+ I+ +     N  +V   V  S   L+++++ G         I    R
Sbjct: 723 ASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITASGTIIRTSMEGISTMGR 782

Query: 637 --KGKTFLKVSSEEKMKLVVKVTGDH 660
             +G   + +  ++ +  V +     
Sbjct: 783 YAQGVKLINIREDDAVGTVCRADKSD 808


>gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
 gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
          Length = 832

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/770 (33%), Positives = 417/770 (54%), Gaps = 38/770 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +N S         +K   +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAEENFS--------QIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYA 52

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+G+      KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 53  MSELGMAPDKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGS 112

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG 
Sbjct: 113 IDGDMAAAMRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGV 172

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I 
Sbjct: 173 SGIAVGMATNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFIL-GREGIR 231

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA+  +EE    +  IVV EIPYQV K+RL+EKIAEL+  KRI  + D
Sbjct: 232 QAYRTGRGSVTMRAKATIEENNNKA-RIVVHEIPYQVNKARLVEKIAELVRDKRIDGITD 290

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R ++P++++ +++  + M++ F +NM  +     P+++ L  +
Sbjct: 291 LRDESDRNGMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIV-NNEPKILNLRDV 349

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  +L H+  V+ RR+ F ++  + R  IL+GL IA  ++DE+IA+IR        +  +
Sbjct: 350 LFYYLEHQVIVIRRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGL 409

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L++ Q  AIL++RL+ L  LE  +I++E   LLA+  ++  +L +       I  
Sbjct: 410 IERFGLSQEQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELREILANEHLVLQIIND 469

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++E+KE FS       RRT   E++  + + L + +I +E + + I++ G+I+      
Sbjct: 470 ELQEIKERFSDE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANT 521

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHG 587
               K     +  +  K  D ++     ++   ++  +  GKAY L A  +        G
Sbjct: 522 YRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARG 581

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  LI +   + I        +DS   L   + +G        + +   + G   + +
Sbjct: 582 TPIINLIQIEQGESINAVIPVENFDSDNFLFFATRQGVVKKTPLEDYVNIRKGGLIAINL 641

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V    G   + +       + F    +  M R   GV+  +  D      + 
Sbjct: 642 REDDSLIEVKLTDGQQEIIIGTAQGMSIRFKESDVRSMGRSATGVKGITLDDDDEVIGMD 701

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               E L  +    + Y +           RGG G        ++G  ++
Sbjct: 702 VVDRE-LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVA 750



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +     + +      + +G ++              L A++ +E DSL
Sbjct: 588 IQIEQGESINAVIPVENFDSDNFLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       +   I L+ + +++   V D  
Sbjct: 648 IEVKLTDGQQEIIIGTAQGMSIRFKESDVRSMGRSATGV-KGITLDDDDEVIGMDVVDRE 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGEN 667
             +L+V++KG       S+  + TR GK    + ++ +    + +KV  + + + ++  +
Sbjct: 707 LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITSS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTIIRTSMEGISTMGRYAQGVKLINIREDDSVGTVC 802



 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 47/383 (12%), Positives = 111/383 (28%), Gaps = 7/383 (1%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRI---VLFPKNRSLDPDLLMESIFMLSDME 336
              ++++  L   K     +++  + AE   I            D    ++  F      
Sbjct: 425 DMRLQRLTGLEREKIENEYQELLAKIAELREILANEHLVLQIINDELQEIKERFSDERRT 484

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
                  ++L    +P+   +  I       R      RS  R       ++      + 
Sbjct: 485 EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSEDFVE 544

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +L +      +            +               + +L ++E+ +  + +  +  
Sbjct: 545 HLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVIPVEN 604

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                     + +    +   E               R   +  EV   D    Q+ +I 
Sbjct: 605 FDSDNFLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQ--QEIIIG 662

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      +RS+   +  +  +   + D +           IL+++T G     P
Sbjct: 663 TAQGMSIRFKESDVRSMGRSATGVKGITLDDDDEVIGMDVVDRELDILIVTTKGYGKRTP 722

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A +  S    G+ I+ +     N  +V   V  S   L++++S G         I    R
Sbjct: 723 ASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITSSGTIIRTSMEGISTMGR 782

Query: 637 --KGKTFLKVSSEEKMKLVVKVT 657
             +G   + +  ++ +  V +  
Sbjct: 783 YAQGVKLINIREDDSVGTVCRAD 805


>gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL]
 gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL]
          Length = 809

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/751 (32%), Positives = 406/751 (54%), Gaps = 23/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + ++DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TSIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L     P+V+ L  +L  ++ H++E++ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVD-NQPKVLTLMDMLNLYIEHQKEIIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+             RF  T+ Q  AIL
Sbjct: 365 TRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQRFQFTDIQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIE------KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             RRT   +    D    +    +           +        +S K     ++ +  +
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQEQETVITLTHFGYIKRLPLDTYKSQKRGGRGITGISTR 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVT 604
           E D ++      T   IL  +  G+ + L A  +  G    +  AI  LI +  ++ I  
Sbjct: 540 EDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKITA 599

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                      L++ +  G    V  SE    TR GK  + ++ ++ +  V   +G D V
Sbjct: 600 TMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTRAGKKAITLADDDSLVDVKLTSGSDEV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      + 
Sbjct: 660 VLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENGFG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +          KRG  G L  +   ++GK +
Sbjct: 719 KRSEIEEYRKTKRGAKGVLTYRVTDKTGKIV 749



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              A+   + DSL        +D ++L+S++G        ++       + +   + L  
Sbjct: 635 GKKAITLADDDSLVDVKLTSGSDEVVLVSSNGYCVVFNENDVRVMGRSAQGV-KGMTLED 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVK 655
              IV          LL V+  G     E  E     R  K  L     +K   +  +  
Sbjct: 694 GDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYRVTDKTGKIVDIKM 753

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           V   D + +       +   + Q+P   R  +GV+L    DG    V    
Sbjct: 754 VNDEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRI-DGEDIKVSSIA 803


>gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8]
 gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8]
          Length = 889

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/791 (31%), Positives = 387/791 (48%), Gaps = 58/791 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP  S+++L+E I  PDFPTGG I+     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPGCSVDELMELIPAPDFPTGG-IIYGMSGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++       IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L     P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVD-GQPRLLNLKQMIDYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATL 510
           +++    +  +L   ++    I+ E++ +K  FS      RR        E+   D  T 
Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDTEDLITP 547

Query: 511 QQAMIEKEPITVVISNRGWIRS-LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
              ++       + S         K       A   KE D +     A+T D +L  S  
Sbjct: 548 TDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNR 607

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    +        G+ I  +  L   + I        +     + + +S+G   
Sbjct: 608 GRVYWLKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKEFSEDHYVFMATSRGTVK 667

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               S+     + G   + +   + +       G H V +  +  K + F  + +  M R
Sbjct: 668 KTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGR 727

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    +D      +     E  + + +    Y +           RG  G +  +
Sbjct: 728 NARGVRGMMLEDTQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 787

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 788 TSSRNGKVVGA 798



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   +GD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 676 NPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM 735

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEK 649
           +  +    I      D T  +L  +  G       +E   + R  K  + +     + + 
Sbjct: 736 MLEDTQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKV 795

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           +  V+ +  D + ++     L+   + +I EM R  +GV L +  DG
Sbjct: 796 VGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDDG 842



 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
              T  +L  + +G     P           + +  +   + N  +V A +   + ++++
Sbjct: 750 GDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKVVGAVLVMPSDEIML 809

Query: 617 VSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++ G       SEI    R   G T + V     +  V +V
Sbjct: 810 ITTGGVLVRTRVSEIREMGRATQGVTLINVDDGSSLSGVRRV 851


>gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
 gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
          Length = 870

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 397/759 (52%), Gaps = 23/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   +I +E L++YI  PDFPTG  I      + +++  GRG   +
Sbjct: 184 HNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  + EV      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEI-EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L     P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALV-NGRPRLLNLKDLIKAFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++     +    ++ RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +         A  +  +       +  +     R+     V       ++ D
Sbjct: 481 RKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDED 540

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAF- 606
            ++    A     +L  +  GK Y L    +  G  + +  AIQ L+++  +  +     
Sbjct: 541 FVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIR 600

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                    + ++  LL  + KG              + G   + +  ++ +  V    G
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNG 660

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD---GGISDVICFKICEGLTWID 713
            + V +   N + + F    +  M R   GV+  +  +     +  +IC K  E  T + 
Sbjct: 661 NNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +  +     +  RGG G        ++GK ++
Sbjct: 721 VSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/458 (10%), Positives = 125/458 (27%), Gaps = 31/458 (6%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K       +R  +LE +   S     ++   K+     + +   I   S  E +    + 
Sbjct: 365 KYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVE 424

Query: 345 VLSMGRVP----QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +           ++      +++ +A+  E+L           D  +EI           
Sbjct: 425 MRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDERKTD 484

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +   N +          +++         +   R +    +     ++  ++ +  
Sbjct: 485 IVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETRDEDFVEY 544

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK-ATLQQAMIE 516
                                ++  +         GR       +   DK     +    
Sbjct: 545 IYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPDDKVQAFIRVKKL 604

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR--ILLLSTDGKAYT 574
                 + S+     + K          +       +       D   I +  T+G    
Sbjct: 605 TTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNGNNEV 664

Query: 575 LPAGNLLSGRGHGEA------------IQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSK 620
           + A          E+              + +D ++  ++V         K  +LVVS +
Sbjct: 665 IIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLVVSEQ 724

Query: 621 GNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVV-KVTGDHVAVVGENRKLLIFSID 676
           G        +     R GK    + ++ +  K+  +      + + ++ ++   +   + 
Sbjct: 725 GYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVA 784

Query: 677 QIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTW 711
            +  + R  +GVRL +   ++  I+ V           
Sbjct: 785 DLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEI 822


>gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218]
          Length = 877

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 401/792 (50%), Gaps = 51/792 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    + + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 57  NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAV
Sbjct: 117 AAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT   ++  R+ IV++Y+ 
Sbjct: 177 GMATNIPPHNLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAA-LISGRKGIVDAYKT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R++  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES
Sbjct: 236 GRGKIYMRSKAEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++
Sbjct: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKDMLKCFV 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------- 415
            HRREV+ RR+ F ++    R  IL+GL +A  NID+II +IR    P            
Sbjct: 355 DHRREVVTRRTIFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGW 414

Query: 416 ---------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                      +   ++ LTE Q  AIL+LRL  L  LE  +I 
Sbjct: 415 ALGNVAAMLERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKIL 474

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   LL E  ++  +L S ++    I  E++ V++ +  +        +         A
Sbjct: 475 DEYKQLLEEIAELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIA 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                +       V         + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 535 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFST 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 595 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDDKFIFMATGDGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++ +  V    GD  + +  ++ K++ F+ DQ+  M 
Sbjct: 655 KKTSLDQFSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAMG 714

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +G     +     +G   +      Y +           R   G +  
Sbjct: 715 RTASGVRGMKLMEGDQVVSLIVPKTDGD-ILTVTENGYGKRTVLAEYPAKSRATQGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G+ + +
Sbjct: 774 KVSERNGRVVGA 785


>gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
 gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
          Length = 823

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 398/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
 gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
          Length = 823

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
 gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
          Length = 823

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 872

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/781 (30%), Positives = 378/781 (48%), Gaps = 48/781 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PVSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +A LAL++N E++I++L++ + GPDFPT G I+     + E YR GRG   +R R   
Sbjct: 190 IIDACLALLNNAEVTIDELIDLVPGPDFPTAG-IIYGVAGVREGYRTGRGRVVMRGRTHF 248

Query: 259 EEVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           E++ +G+    I++ E+PYQV K  L+EKI EL+  KRI  + D+RDES +    V+   
Sbjct: 249 EDMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSGMRVVIEL 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++  ++  + ++  F +NM  L     P+++ L  +L+ +L HRREVL RR+
Sbjct: 309 KRGEVAEVVLNCLYKQTQLQDTFGMNMVALVD-GQPRLLNLKQMLECFLRHRREVLTRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------------- 422
            F ++    R  I +GL +A  N+DEIIA+I+    P        S              
Sbjct: 368 VFELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTVAEMLQR 427

Query: 423 -----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E Q  AIL LRL+ L  LE  +I ++   LLA   
Sbjct: 428 AALDATRPQGLGLEYGLSASGYLLSEAQAQAILELRLQRLTGLERDKIVADYGELLARIA 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L   ++    I  E+  ++  F          +T           +   +     
Sbjct: 488 DLMDILARPERITEMIVEELTAIRAQFGDKRRSEIVISTQDLGIEDFITPVDMVVTLSHT 547

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             +        R+ +       A   K  D +     A+T D IL  +  G+ Y L    
Sbjct: 548 GYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRVYWLKVYE 607

Query: 580 LLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +        G+ I  L      + I        +     + + +++G       S+    
Sbjct: 608 VPQGTRTSRGKPIVNLFPFEEGEKISAILPVKEFTDDRYIFMCTAQGTVKKTPLSDFSNP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
            + G   + +  E+ +       G   V +V +  K + F  + +  M R  +GVR    
Sbjct: 668 RKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPMGRTARGVRGMRL 727

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            D      +     +  T + +    + +           RG  G +   G  R+G+ ++
Sbjct: 728 ADQQQVLSLLVADNDQQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERNGRVVA 787

Query: 753 S 753
           +
Sbjct: 788 A 788



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 7/169 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   + D L  A   + T  ++L+S  GKA      ++         ++ +
Sbjct: 666 NPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPMGRTARGVRGM 725

Query: 594 IDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEK 649
             L   Q +++  V D+  + +LV +  G       ++   + R   G   +  S    +
Sbjct: 726 R-LADQQQVLSLLVADNDQQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERNGR 784

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
           +     V   D + ++     L+   + +I E+ R  +GV L +   G 
Sbjct: 785 VVAARLVRDEDEIMLITTGGVLIRTRVREIRELGRATQGVTLIALDAGE 833


>gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
 gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
          Length = 807

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/752 (31%), Positives = 397/752 (52%), Gaps = 14/752 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+     
Sbjct: 3   FDEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKG 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 63  YRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+G++++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 123 TEAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    + +I+NPE++I +L+  I GPDFPT GIIV     I  +Y  GRG   
Sbjct: 183 PPHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIV-GTSGIKSAYETGRGKII 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  ++E   G   IV+TEIPYQV KS+LIE +A+L+  KRI  + DIRDES  D   
Sbjct: 242 VRAKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++ +  ++  + M+  F + M  L     P+V+ L  +L  +L  + E+
Sbjct: 301 IVVELKRDANANITLNQLYKHTRMQDTFGVIMLTLVD-NEPKVLNLKQMLVHYLKFQEEI 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           L RR+ F +   + R  IL+GL IA   IDE+I +IR+       +  ++ +F+L+E Q 
Sbjct: 360 LTRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E + L+   + +  +L +     N I  E+ E+++ +  
Sbjct: 420 QAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 + +             +  +       +   +     S +     + A+  KE 
Sbjct: 480 ERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGIQAMTTKED 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAF 606
           D ++      T   IL  +  GK Y L    +       +      L+ L+ ++ I    
Sbjct: 540 DFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDGDEQIQAVI 599

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
            +   D     ++ + +G     E ++  +  + G   + +   +++  V   TGD  V 
Sbjct: 600 SFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKMTTGDSEVL 659

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +  +N   + FS   +    R   GV+  + +   I+  +     +    +  +   + +
Sbjct: 660 IFTKNGYAIRFSEKDVRPTGRNTTGVKAITLRKKDIAVAMDIASNKED-ILVVSENGFGK 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   + KRGG G +  K   ++G  + +
Sbjct: 719 RTPVTEYTIHKRGGKGIITYKSTEKTGLIVGA 750



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 6/208 (2%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +   + K               ++      +        L+A++ ++GD L        
Sbjct: 595 IQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKMTTG 654

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              +L+ + +G A      ++     +   +   I L      V   +  +   +LVVS 
Sbjct: 655 DSEVLIFTKNGYAIRFSEKDVRPTGRNTTGV-KAITLRKKDIAVAMDIASNKEDILVVSE 713

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSI 675
            G       +E   + R GK  +   S EK   +     V   D + ++  +   +  ++
Sbjct: 714 NGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGARVVKDEDEMMLINSSNVAIRLNV 773

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             I   SR   GV L   ++      I 
Sbjct: 774 SDISTTSRNAMGVTLMRTEEEQRVVAIA 801


>gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
 gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
          Length = 823

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 399/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD+++Y+S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
 gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/807 (29%), Positives = 391/807 (48%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM EM   +  
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F K AR+VGEV+GK HPHGD S+YD+LVR+AQ F  RY L+ GQGNFG+IDGD AAA R
Sbjct: 62  PFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ +++  +L  ++++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+   AL L+ N + +I++L+E +  PDFPTGG I+     + + YR GRG  
Sbjct: 182 IPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGG-IIYGVSGVRDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   EE GR G   I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +  
Sbjct: 241 VMRAKTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L+HRR
Sbjct: 301 MRVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPRLLNLKQLLECFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIR                     
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSM 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L++ Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E  +++A+   +  +L    +    I  E+   K  F       RR T        
Sbjct: 480 KIVNEYKDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIE----HN 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G+++S         K       A+  K+ D +     A
Sbjct: 536 ATDLATEDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L   + I            +
Sbjct: 596 NTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S G       S+     + G   + +   + +       G H V +  + 
Sbjct: 656 PDDRYVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDG 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GVR  + ++      +     E  + + +    + +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVRGMNLEETQQVIALLVAENEQQSVLTATENGFGKRTPIT 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGKVVAA 802



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 86/263 (32%), Gaps = 16/263 (6%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G + T 
Sbjct: 594 IANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMF---------PLQDGEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              VS A+++      +        +               + A+   EGD L  A    
Sbjct: 645 ILPVSGANRSFPDDRYVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVV 617
               ++L S  GKA      ++         ++ + +L   Q ++   V ++  + +L  
Sbjct: 705 GQHDVMLFSDGGKAVRFDENDVRPMGRTARGVRGM-NLEETQQVIALLVAENEQQSVLTA 763

Query: 618 SSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  G       +E   + R  KG   ++ S    K+     V   D + ++     L+  
Sbjct: 764 TENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDSTDEIMLITTGGVLIRT 823

Query: 674 SIDQIPEMSRG-KGVRLQSYKDG 695
            + +I EM R  +GV L + +DG
Sbjct: 824 RVSEIREMGRATQGVTLIAVEDG 846


>gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301]
 gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301]
          Length = 882

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/780 (30%), Positives = 379/780 (48%), Gaps = 47/780 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNINE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  AL+ +PE+ IE+L+E +  PDFPT G I+     + E YR GRG   +R R  V
Sbjct: 190 VLDACFALLKDPEMGIEELIELVPAPDFPTAG-IIYGTVGVKEGYRTGRGRVVMRGRTHV 248

Query: 259 EEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++   G   ++V E+PYQV K   +EKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDLERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ +++  + ++  F +NM  L     P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEIAEVVLNNLYKQTQLQDTFGMNMVALLD-GQPRLLNLKQMLEAFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-------------------- 417
           F ++    R  IL+GL +A  N+DE+IAII+    P                        
Sbjct: 368 FELKKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVEEMLKRA 427

Query: 418 -----------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                             + + L++ Q   IL +RL+ L  LE+ ++ SE   ++     
Sbjct: 428 AMEASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEVMDIIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L +  +    I  E+ E+++ F                           +      
Sbjct: 488 LLDILATPARVTAIINDELTEIRKQFGDKRRSEIVANAQDLSLEDFITPQDVVVTLSHTG 547

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            V        R+ +       A   KE D +     A+T D IL  S+ G+ Y L    +
Sbjct: 548 YVKSQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVYWLKVYEV 607

Query: 581 LS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                 G G+ I  L  L   + I        +D    + + +S G       S+     
Sbjct: 608 PQGSRTGRGKPIVNLFPLEEGEKINAILSVKEFDENHFIFMATSLGTVKKTPLSDFANPR 667

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
           + G   + +   + +       G + V +V    K + F+ D +  M R  +GVR     
Sbjct: 668 KSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSMGRATRGVRGMKLA 727

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           D      +     +  + + +    Y +           RG  G        R+G  +++
Sbjct: 728 DNQQVLSLLIADNDQQSVLVATENGYGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAA 787



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKG 621
           ++L+S  GKA      ++ S       ++ +  L  NQ +++  + D+  + +LV +  G
Sbjct: 694 VILVSNGGKAVWFTEDDVRSMGRATRGVRGM-KLADNQQVLSLLIADNDQQSVLVATENG 752

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQ 677
                  ++   + R   G   + +S    + +  K+    D + ++     L+   + +
Sbjct: 753 YGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAAKLVNEDDEIMLITTGGVLIRTRVKE 812

Query: 678 IPEMSRG-KGVRLQSYKDGG 696
           I E+ R  +GV L +  +G 
Sbjct: 813 IRELGRATQGVTLINLGEGE 832



 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 68/220 (30%), Gaps = 12/220 (5%)

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
               +   I S+    +  +  +A  +  VK+         R+              +  
Sbjct: 626 EEGEKINAILSVKEFDENHFIFMATSLGTVKKTPLSDFANPRKSGIIAINLDEGDFLIGA 685

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH---------AHTTDRI 563
            +       +++SN G         V       +    +K+A +          +    +
Sbjct: 686 EITNGANDVILVSNGGKAVWFTEDDVRSMGRATRGVRGMKLADNQQVLSLLIADNDQQSV 745

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L+ + +G        +        + ++ +     N  +V A + +   +++++++ G  
Sbjct: 746 LVATENGYGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAAKLVNEDDEIMLITTGGVL 805

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLV-VKVTGDH 660
                 EI    R   G T + +   EK+  +   V  D 
Sbjct: 806 IRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKIVESDD 845


>gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
          Length = 853

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/747 (31%), Positives = 386/747 (51%), Gaps = 14/747 (1%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            +V +   ++  YL YA+S I  RA+PD RDG KPVHRRI+ AM ++G  F   FKKSAR
Sbjct: 9   VSVLIEDEMKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDKPFKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD+LVR+AQP+  R+ L+ GQGNFG++DGDS AA RYTEARM+
Sbjct: 69  VVGDVIGKYHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMRYTEARMS 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  +D+D VDF   Y+E   EP V P+++PNLL NG+ GIAVGMAT+IP HN+ 
Sbjct: 129 RLAGELLADIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATNIPPHNLA 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E   A +AL++NPEI  ++L++ + GPDFPTGG  +  R  I  ++  GRG   +RAR  
Sbjct: 189 ETINATIALVNNPEIDDDELMQIMPGPDFPTGG-FIYGRSGIRSAFMTGRGSVTMRARAI 247

Query: 258 VE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           VE         +++TE+PYQV K+ LIE IA  +  K++  + D+RDES  D   +    
Sbjct: 248 VEVNPRTHRQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGMRIAIEL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            ++  P++++ +++  + ++  F  N+  L     P++  +  +L  +L HRR+V+ RR 
Sbjct: 308 KKNEIPEVVLNNLYKHTQLQCNFGCNLLALLD-GQPKLCGVRELLLHFLDHRRQVVTRRC 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILN 433
            F +   + R  IL+GLLIA   IDE+I +IR            +  F L++ Q  AIL+
Sbjct: 367 LFDLAKAEARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLMEHFGLSDLQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +IK+E + +      + ++L   K   N I  E+  V++ ++      
Sbjct: 427 MRLQRLTGLERDKIKAEYEEIQRLITHLKAILADEKLLMNVIVEEMEAVRDRYADPRRSE 486

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
               T               +       +  +     R+ +      +A+  K+ D +  
Sbjct: 487 IMDETAELSVEDLITEEDMVVTISNEGYIKRNATSLYRAQRRGGQGKTAMTTKDEDFVAQ 546

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---Y 608
            + A T D +L  S  G+ +      +        G+A+  L+ +  ++ I        +
Sbjct: 547 LMVASTHDYLLFFSDQGRVFRKKVYEVPQAGSTARGKALVNLLPVEKDERISATLAIREF 606

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGEN 667
           D    +++ +  G       SE       G   +K+  ++ +  V+   GD  V +    
Sbjct: 607 DENRFIIMATKNGVVKKTRLSEYQNIRANGIIAIKLDDDDGLISVLVSNGDEDVMLATSG 666

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F+   +  M R  +GV       G  + +    + +  T +  +   + +  +  
Sbjct: 667 GKAIRFAESDVRPMGRSTRGVTGMRLP-GDCNVISMTLVSDEATLLAVSENGFGKRTSVS 725

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + KRGG G    K   R+G  +++
Sbjct: 726 EYNVQKRGGQGVFTLKTGGRNGDMVAA 752



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 76/190 (40%), Gaps = 7/190 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+            +  + A+   + D L   L ++  + ++L ++ GKA    A + + 
Sbjct: 620 VVKKTRLSEYQNIRANGIIAIKLDDDDGLISVLVSNGDEDVMLATSGGKAIRF-AESDVR 678

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             G        + L  + ++++  +      LL VS  G       SE     R G+   
Sbjct: 679 PMGRSTRGVTGMRLPGDCNVISMTLVSDEATLLAVSENGFGKRTSVSEYNVQKRGGQGVF 738

Query: 643 KVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +     + + +  ++    D V ++ ++ +L+   ++ +  + R  +GV+L + K+G  
Sbjct: 739 TLKTGGRNGDMVAALLVHDDDQVMMMTDSGRLVRIRLNGVSVIGRNTQGVKLIACKEGER 798

Query: 698 SDVICFKICE 707
             +   ++ E
Sbjct: 799 V-IGAVRVAE 807


>gi|240850737|ref|YP_002972137.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
 gi|240267860|gb|ACS51448.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
          Length = 749

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/748 (62%), Positives = 602/748 (80%), Gaps = 2/748 (0%)

Query: 6   ISNSNTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+   L   +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  
Sbjct: 1   MSDKMNLPFDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRL 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+ G ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGI
Sbjct: 121 DNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HNV E+C+AAL LI +P+++ E+L ++++GPDFPTGGI+VE ++SI ESY
Sbjct: 181 AVGMATSIPPHNVAELCDAALHLIAHPDVNDEELNQFVLGPDFPTGGILVEPKKSIEESY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R+GRG FR+R+RW  E   RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI+D
Sbjct: 241 RVGRGFFRLRSRWHQESGSRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIQD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+RIVL PKNR++DP+LLMES+F L+D E RFPLN+NVLS+G++P V+ L   L++
Sbjct: 301 ESAEDIRIVLVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQ 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR+EVL RRS +R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  ++SRF L
Sbjct: 361 WLEHRQEVLIRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKKQLISRFEL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TENQ +AILN+RLRSLRKLEE++I+ E ++L AEKEK+ +LL S  +QW  I+ EI++V+
Sbjct: 421 TENQAEAILNMRLRSLRKLEEFEIRKEFESLKAEKEKLQNLLASPIKQWKIISEEIKKVR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             F   T LG+RRTTF E  R D   +QQAMIEKEPIT+VIS +GW+R+LK H  D  AL
Sbjct: 481 NTFGPETPLGKRRTTFEEAPRHDLDDIQQAMIEKEPITIVISEKGWMRALKGHLNDYKAL 540

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGDSLK+A  A TTD+I+L+ST GK + + A +L  GRGHGE I+LL+D++   D++
Sbjct: 541 SFKEGDSLKLAFPAFTTDKIVLISTGGKFFAIGANSLPGGRGHGEPIRLLVDMDDEHDVL 600

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           TAFV+ +  KLL+VSS GN FIV  +E+IANTRKGK  + V + +K+KL V+V GDHVAV
Sbjct: 601 TAFVHHAEEKLLLVSSHGNGFIVSSAEVIANTRKGKQVMNVKAPDKVKLCVQVNGDHVAV 660

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRK+LIFSI+QIPEM+RGKGVRLQ YK+GG+ D   F + EGL+W D+A R +NR  
Sbjct: 661 VGENRKMLIFSIEQIPEMNRGKGVRLQRYKEGGVVDAKTFNLSEGLSWQDTAERIFNRQA 720

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +DL  W+G R GVG LVP+GFP+SGKF+
Sbjct: 721 DDLFEWMGMRAGVGRLVPRGFPKSGKFI 748


>gi|15888496|ref|NP_354177.1| DNA topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
 gi|15156198|gb|AAK86962.1| topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
          Length = 750

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 495/750 (66%), Positives = 612/750 (81%), Gaps = 2/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D +  S    ++N+  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHA
Sbjct: 1   MGKDLVPPSG--GDDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMG+   +AFKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGN
Sbjct: 59  MSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAAYRYTEARMT VA L+L+G+ EDAVDFR TYNEED EPVV P  FPNLLANG 
Sbjct: 119 IDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+C+AAL LI +P+ ++EKL+E+I GPD PTGG+I+ESRE+I+
Sbjct: 179 SGIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENIL 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRGGFRVRA+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 239 DAYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLED 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAEDVRIVL PKNR++D  LLMES+F LSD+E+R PLNMNVLS+G+VP+VM L+ +
Sbjct: 299 VRDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGKVPKVMALNEV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWLAHR++VL RRS  R+ AIDRR+EIL GLLIAYLN+DE+I IIR ED+PK VM++R
Sbjct: 359 LSEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEPKQVMMAR 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +SLT+NQ +AILN+RLR+LRKLEE++I+ E D+L  EK +I+ LL S  +QW  +A EI 
Sbjct: 419 WSLTDNQAEAILNMRLRNLRKLEEFEIRKEHDDLSKEKSEIEGLLASDDKQWQTVAWEIG 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ ++K+T++GRRRT F +   AD   +QQAMIEKEP+T+VIS +GWIR+LK H  D 
Sbjct: 479 EVKKKYAKATEIGRRRTQFADAPDADIEAIQQAMIEKEPVTIVISQKGWIRALKGHMSDT 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SAL FKEGD  K+A  A TTD++LLL+T GKAYTL A  L  GRGHGE I++++D+ ++Q
Sbjct: 539 SALTFKEGDGPKLAFPAQTTDKLLLLTTGGKAYTLGADKLPGGRGHGEPIRIMVDMENDQ 598

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DI+TAFV+D + KLL+VS+ GN FIV ESE+IANTRKGK  + VS  ++ KL V VTGDH
Sbjct: 599 DILTAFVHDPSRKLLLVSTGGNGFIVAESEMIANTRKGKQIMNVSMPDEAKLAVPVTGDH 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL F + Q+PEMSRGKGVRLQ YKDGG+ DV CF + +GL+W D+AGR++ 
Sbjct: 659 VAVVGENRKLLAFPLSQVPEMSRGKGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRAFT 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +   +L  WL  R  VG  VPKGFPRSGKF
Sbjct: 719 KVGEELREWLADRATVGRTVPKGFPRSGKF 748


>gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
 gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
          Length = 823

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/759 (31%), Positives = 397/759 (52%), Gaps = 18/759 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G
Sbjct: 1   MSEE---IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD 
Sbjct: 58  VTPDKAHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAV
Sbjct: 118 AAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG +V  +  I  +Y  
Sbjct: 178 GMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGG-LVMGKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES
Sbjct: 237 GKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   ++    R     +++ +++ L+ ++  F  NM  +    VP+V+ L  IL+ ++
Sbjct: 297 SREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEK-GVPKVLSLKQILENYI 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FS 422
            H+REV+ RR+ F  +  + R  IL+GL IA  +IDEIIAIIR          +    F 
Sbjct: 356 EHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++
Sbjct: 416 LSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADL 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
            + F               +   D    ++ +I       +        R+ +     + 
Sbjct: 476 NQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHN 599
            +     D +K  +   T D +L  + +GK Y      +       +   I  L+ ++ +
Sbjct: 536 GMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSS 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          +    L   + +G       +        G   + +  ++++  V+ 
Sbjct: 596 ESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLL 655

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  ++ +   N   + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKEDQEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 7/201 (3%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            +            S  L A+  KE D L   L       I++ + +G + T      + 
Sbjct: 622 TVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFK-EEAVR 680

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF- 641
             G   +    I L     +V A +     ++LV++ KG     + SE     R GK   
Sbjct: 681 DMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIK 740

Query: 642 ---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
              +   +     L      + + ++ +   ++ F++  + +  R   GVRL   +    
Sbjct: 741 TANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTK 800

Query: 698 SDVICFKICEGLTWIDSAGRS 718
              +     E         + 
Sbjct: 801 VVTMAAVEPEAAE-QTVEEQG 820


>gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
 gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
          Length = 892

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/793 (32%), Positives = 392/793 (49%), Gaps = 52/793 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G
Sbjct: 1   MSD----LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS
Sbjct: 57  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +++D VD+   Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 117 AAAMRYTEIRMSKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA I++  ISIE L+EYI GPDFPT   I+  R  I E+YR 
Sbjct: 177 GMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAA-IINGRRGIEEAYRT 235

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RAR  VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDE
Sbjct: 236 GRGKVYIRARGEVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  +
Sbjct: 296 SDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-SQGQPKLLNLKDILVAF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------- 415
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P           
Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASP 414

Query: 416 ----------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                       +   ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 415 WELGNVSAMLERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKL 474

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL    ++  +L + ++    I  E+  +KE +S +        T         
Sbjct: 475 LDEYKELLTAIAELIFILENPERLMEVIREELVAIKEQYSDARRTEITANTSDINIEDLI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                 +       V         + +      SA   KE D +   L A+T D IL  S
Sbjct: 535 NQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFS 594

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + G+ Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V    G + V +     K++ F   Q+  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR  +         +     +G   +      Y +           R   G + 
Sbjct: 715 GRTATGVRGINLNGDDRVISLIIPRGDGE-ILTVTENGYGKRTAVEEYPTKSRATQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+GK + +
Sbjct: 774 IKVSERNGKVVGA 786


>gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200]
          Length = 917

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/807 (30%), Positives = 388/807 (48%), Gaps = 67/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT   I+  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAA-IINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+    P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALT-NGQPKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--------------- 415
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHV 419

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                 +   ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +                        
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVV 539

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +                ++ +      +A   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 540 VTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMY 599

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+  + I              +++ +S G       
Sbjct: 600 WLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSNGTVKKTAL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID----------- 676
           +        G   + +   +++  V    GD  + +     K++ F              
Sbjct: 660 TAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKT 719

Query: 677 ---------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
                     +  M R   GVR    ++G     +     +G   +      Y +     
Sbjct: 720 DPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGA-ILTVTENGYGKRTQLS 778

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 R   G +  K   R+G  + +
Sbjct: 779 EYPAKSRATKGVVSIKVSERNGAVVGA 805


>gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
 gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
          Length = 844

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/760 (31%), Positives = 413/760 (54%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 V  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+    
Sbjct: 3   ETPSSRVTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD+AAA R
Sbjct: 63  PYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+RM++++  +L+ +++D +D++D Y+ E+ EPVV P++FPNLL NGT+GIAVGMAT+
Sbjct: 123 YTESRMSKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H + EI +  LA+   P+I+I++L+E I GPDFPT G+I+  R  I ++Y  GRG  
Sbjct: 183 IPPHQLGEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMIL-GRSGIRKAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  + D+RDES  +  
Sbjct: 242 TLRAKVDIETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +  +++ +++ L+ ++T F +NM  L     P+V+ L   LK +L H++ 
Sbjct: 302 RIVIEVRKDANASVILNNLYKLTALQTSFGINMLALVD-GQPKVLNLKQCLKYYLDHQQV 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  ++DE+I++IR+       +  ++++F L++ Q
Sbjct: 361 VIRRRTEFELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQFELSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E  +L+    +++++L   ++    I  E+ E+KE F+
Sbjct: 421 AQAILDMRLQRLTGLEREKIEDEYQSLVKLIAELEAILADEEKVLEIIREELTEIKERFN 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     S   +    + +I +E I + +++ G+++          K     
Sbjct: 481 DE-----RRTEIV--SGGIEQIEDEDLIPRENIVITLTHNGYVKRLPVSTYRAQKRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE--AIQLLIDLN 597
           +  +   E D ++  +   T + +L  +  GK Y      +       +   I  L+ +N
Sbjct: 534 IQGMGTNEDDFVEHLITTSTHNTLLFFTNKGKVYRAKGYEIPEFSRTAKGIPIINLLGIN 593

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ +      +       L   + +G +     +        G   L +   +++  V 
Sbjct: 594 KDEWVNAVIPVEEFVDEWFLFFTTKEGISKRSPLTSFGNIRNNGLIALNLREGDELISVR 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   + +  +N +L+ F    +  M R   GV+  +        V    + E    +
Sbjct: 654 LTDGSKEIIIGTKNGQLIRFPETDVRSMGRTATGVKGITLDSDDEV-VGMEVLEENSEIL 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +   ++   +  RGG G        ++G  ++
Sbjct: 713 MVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKNGTIVA 752



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G+    P  ++ S       +   I L+ + ++V   V +   ++L+V+ KG     
Sbjct: 665 TKNGQLIRFPETDVRSMGRTATGV-KGITLDSDDEVVGMEVLEENSEILMVTKKGYGKRT 723

Query: 627 EESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
            E E     R GK      +   +   +  V  VTG+  + ++     L+  ++  I  M
Sbjct: 724 PEMEYRVQGRGGKGIKTGNITDKNG-TIVAVKVVTGEEDIMLITTGGVLIRMAVGDISTM 782

Query: 682 SR-GKGVRLQSYKDGGISDVIC 702
            R  +GVRL    D     V  
Sbjct: 783 GRNTQGVRLIRINDSEGEYVAT 804


>gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
 gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
          Length = 873

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/807 (29%), Positives = 392/807 (48%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +  
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F K AR+VGE +GK HPHGD S+YD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA R
Sbjct: 62  PFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ + AL ++ N + ++++L+E I  PDFPTGG I+     + + YR GRG  
Sbjct: 182 IPPHNITEVIDGALHVLRNADATVDELIEIIPAPDFPTGG-IIYGVSGVRDGYRTGRGRV 240

Query: 251 RVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   EE        I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +  
Sbjct: 241 VMRAKTHFEEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ +++  + ++  F +NM  L     P+++ L  +L+ +L+HRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPKLLNLKQMLECFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAII+                     
Sbjct: 360 EVVTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSV 419

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLARTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E   ++ +   +  +L   ++    I  E+   K  +       RR T        
Sbjct: 480 KIVNEYKEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSTIEL----N 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  + + V +S+ G++        R+ K       A+  K+ D +     A
Sbjct: 536 ATDLGTEDLITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D IL  S  G+ Y L    +        G+ I  +  L   + I            +
Sbjct: 596 NTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPISGENRTF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                + + +S G       S+     + G   + +   + +       G H V +  ++
Sbjct: 656 PEDHYIFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDS 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  M R  +GVR  + ++G     +     E  + + +    + +     
Sbjct: 716 GKAVRFDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGFGKRTPIT 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQTSERNGKVVAA 802



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 16/263 (6%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +    +Y +       L   +  +    S   +   I                 G + T 
Sbjct: 594 IANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMF---------PLQDGEKITV 644

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +S  ++   +   I        +               + A+   +GD L  A    
Sbjct: 645 ILPISGENRTFPEDHYIFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTD 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVV 617
               ++L S  GKA      ++         ++ + +L   Q ++   V ++  + +L  
Sbjct: 705 GKHDVMLFSDSGKAVRFDENDVRPMGRTARGVRGM-NLEEGQQVIALLVAENEQQSVLTA 763

Query: 618 SSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G       +E   + R  KG   ++ S    K+     V   D + ++     L+  
Sbjct: 764 TENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDASDEIMLITTGGVLIRT 823

Query: 674 SIDQIPEMSRG-KGVRLQSYKDG 695
            + +I EM R  +GV L + +DG
Sbjct: 824 RVAEIREMGRATQGVTLIAVEDG 846


>gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42]
 gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42]
          Length = 888

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/814 (29%), Positives = 397/814 (48%), Gaps = 71/814 (8%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + S   T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+
Sbjct: 7   HPSVDMTQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
             D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD
Sbjct: 67  NNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGD 126

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE R++++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIA
Sbjct: 127 SAAAMRYTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIA 186

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +A L L+  P+ ++++L+E I  PDFPT G I+     + E YR
Sbjct: 187 VGMATNIPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAG-IIYGINGVKEGYR 245

Query: 245 LGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            GRG   +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K++  +  I+D
Sbjct: 246 TGRGKVVMRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQD 305

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES +    ++    R   P++++ +++  + ++  F +NM  L     P++  L  +++ 
Sbjct: 306 ESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVD-GQPKLCNLKDLIEV 364

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------ 411
           +L HRREV+ RR+ F ++    R  +L+GL +A  NIDE I IIR               
Sbjct: 365 FLQHRREVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMAR 424

Query: 412 ---------