RPSBLAST alignment for GI: 254780353 and conserved domain: smart00434
>gnl|CDD|128711 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC. Length = 445
Score = 513 bits (1323), Expect = e-146
Identities = 208/462 (45%), Positives = 292/462 (63%), Gaps = 26/462 (5%)
Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
+ + + + YL Y++S I RAIPD+RDG KPV RRI++AM + GL KSAR V
Sbjct: 1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGV 60
Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
G+V+GK HPHGD S+YD++VR+AQ F YPL+ GQGNFG+ DGD AAA RYTE R++
Sbjct: 61 GDVMGKYHPHGDSSLYDAIVRMAQDFSNNYPLLDGQGNFGSRLDGDDAAAMRYTETRLSP 120
Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
+A +L +D+D VDF Y+ ++ EP V P PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 121 LARELLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVNGSSGIAVGMATNIPPHNLRE 180
Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
+ +A LIDNPE SI++L+ GPDFPTGG I+ G G + VR + +
Sbjct: 181 VIDAVRRLIDNPEASIDELMMIPWGPDFPTGGEII------------GPGSYVVRGKIEI 228
Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
E+ G IV+TE+PYQV K++LIEKIAEL+ K+I + D+RDES VRIV+ K
Sbjct: 229 ED---GRNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELK 285
Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
R ++++ ++ L+ +++ F +NM L P+ L ILKE+L HR EV RR
Sbjct: 286 -RGAMAEVVLNGLYKLTKLQSTFSINMLALFDNGKPKKYNLKEILKEFLDHRLEVYTRRK 344
Query: 377 SFRMQAIDR-RVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRFSLTENQVDAI 431
+ + ++ R+ IL+GL IA IDEII +IR+ K +++ RF L+E Q DAI
Sbjct: 345 EYLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKEAKELLMERFELSEEQADAI 404
Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
L++RLR L KLE +++ EL L E E ++ +L + W
Sbjct: 405 LDMRLRRLTKLEVEKLEKELKELEKEIEDLEKIL--ASELWL 444