RPSBLAST alignment for GI: 254780353 and conserved domain: TIGR01061
>gnl|CDD|162182 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. Length = 738
Score = 424 bits (1092), Expect = e-119
Identities = 237/719 (32%), Positives = 398/719 (55%), Gaps = 30/719 (4%)
Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
E + YA I++RA+PD+RDG KPV RRI++AM + G F +KKSAR VGE++GK H
Sbjct: 12 ESFGKYAKYIIQDRALPDIRDGLKPVQRRILYAMFQDGNTFDKPYKKSARTVGEIMGKYH 71
Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
PHGD S+YD++VR++Q + + L+ GN G+IDGD+AAA RYTEAR++ +A +L+ +
Sbjct: 72 PHGDSSIYDAMVRMSQDWKNNWTLVEMHGNNGSIDGDNAAAMRYTEARLSLIASELLKDI 131
Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
D+ V F +++ + EP V P+ FPNLL NG +GIA G AT+IP HN+ E+ +A + I
Sbjct: 132 DKKTVSFIPNFDDSEKEPTVLPALFPNLLINGATGIAAGYATNIPPHNLNEVIDALIYRI 191
Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
D+P S++KL+E + GPDFPTGGII + + I ++Y G+G F +RA+ +E G
Sbjct: 192 DHPNCSVDKLMEIVKGPDFPTGGII-QGEDGISKAYETGKGKFIIRAKIEIEVNKNGLNQ 250
Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
IV+TEIPY+ K+ +++KI E+I ++ +E++RDES + +RI++ K + + + ++
Sbjct: 251 IVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELK-KDANAEKIL 309
Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
+F +D++ + NM ++ R P + L L ++ H EV+ RS + ++ +R
Sbjct: 310 NFLFKHTDLQINYNFNMVAIA-NRTPIQVGLLSYLDAYIKHCHEVIINRSKYELEKASKR 368
Query: 387 VEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
+EI++GL+ A IDEII +IR +EDK K ++ F TENQ +AI++LRL L +
Sbjct: 369 LEIVEGLIKAISIIDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRLYRLTNTD 428
Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
+++K E + L + ++ ++ S K + + ++ E K+ F++ RR+ +
Sbjct: 429 IFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQ-----RRSQIEDFI 483
Query: 504 RADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKEGDSLKIALHAH 558
K + +IE E V+I+ G+I RS S K+ D L A+
Sbjct: 484 NQIKINESE-LIENEDYYVLITKAGYIKRTSNRSFASSKYT--DFGSKDDDILFAQTIAN 540
Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDS----TC 612
TTD+IL+ ++ G +P L R GE + I + N+ IV +
Sbjct: 541 TTDQILIFTSLGNIINIPVHKLADIRWKDLGEHLSNKITFDENETIVFVGTMNEFDVDQP 600
Query: 613 KLLVVSSKGNAFIVEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKL 670
L++ S G +E +E+ K +K+ ++ + D + +V +
Sbjct: 601 ILVLASKLGMVKRIELTELNIKRNSKATLCIKLKDKDHLISAFLQQKDKLICLVSDLGYA 660
Query: 671 LIFSIDQIPEM-SRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
L+F ++IP + ++ GV+ K D + + F+ E L + G S ++L+
Sbjct: 661 LVFHTNEIPVVGAKAAGVKGMKLKEDDQVKSGVIFEANESLVLLTQRGSVKRLSISELV 719