RPSBLAST alignment for GI: 254780353 and conserved domain: TIGR01061

>gnl|CDD|162182 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. Length = 738
 Score =  424 bits (1092), Expect = e-119
 Identities = 237/719 (32%), Positives = 398/719 (55%), Gaps = 30/719 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E +  YA   I++RA+PD+RDG KPV RRI++AM + G  F   +KKSAR VGE++GK H
Sbjct: 12  ESFGKYAKYIIQDRALPDIRDGLKPVQRRILYAMFQDGNTFDKPYKKSARTVGEIMGKYH 71

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +   + L+   GN G+IDGD+AAA RYTEAR++ +A  +L+ +
Sbjct: 72  PHGDSSIYDAMVRMSQDWKNNWTLVEMHGNNGSIDGDNAAAMRYTEARLSLIASELLKDI 131

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+  V F   +++ + EP V P+ FPNLL NG +GIA G AT+IP HN+ E+ +A +  I
Sbjct: 132 DKKTVSFIPNFDDSEKEPTVLPALFPNLLINGATGIAAGYATNIPPHNLNEVIDALIYRI 191

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P  S++KL+E + GPDFPTGGII +  + I ++Y  G+G F +RA+  +E    G   
Sbjct: 192 DHPNCSVDKLMEIVKGPDFPTGGII-QGEDGISKAYETGKGKFIIRAKIEIEVNKNGLNQ 250

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           IV+TEIPY+  K+ +++KI E+I   ++  +E++RDES  + +RI++  K +  + + ++
Sbjct: 251 IVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELK-KDANAEKIL 309

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +F  +D++  +  NM  ++  R P  + L   L  ++ H  EV+  RS + ++   +R
Sbjct: 310 NFLFKHTDLQINYNFNMVAIA-NRTPIQVGLLSYLDAYIKHCHEVIINRSKYELEKASKR 368

Query: 387 VEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           +EI++GL+ A   IDEII +IR +EDK   K  ++  F  TENQ +AI++LRL  L   +
Sbjct: 369 LEIVEGLIKAISIIDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRLYRLTNTD 428

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
            +++K E + L  +   ++ ++ S K +   +  ++ E K+ F++      RR+   +  
Sbjct: 429 IFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQ-----RRSQIEDFI 483

Query: 504 RADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKEGDSLKIALHAH 558
              K    + +IE E   V+I+  G+I     RS  S          K+ D L     A+
Sbjct: 484 NQIKINESE-LIENEDYYVLITKAGYIKRTSNRSFASSKYT--DFGSKDDDILFAQTIAN 540

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDS----TC 612
           TTD+IL+ ++ G    +P   L   R    GE +   I  + N+ IV     +       
Sbjct: 541 TTDQILIFTSLGNIINIPVHKLADIRWKDLGEHLSNKITFDENETIVFVGTMNEFDVDQP 600

Query: 613 KLLVVSSKGNAFIVEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKL 670
            L++ S  G    +E +E+      K    +K+  ++ +        D  + +V +    
Sbjct: 601 ILVLASKLGMVKRIELTELNIKRNSKATLCIKLKDKDHLISAFLQQKDKLICLVSDLGYA 660

Query: 671 LIFSIDQIPEM-SRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           L+F  ++IP + ++  GV+    K D  +   + F+  E L  +   G     S ++L+
Sbjct: 661 LVFHTNEIPVVGAKAAGVKGMKLKEDDQVKSGVIFEANESLVLLTQRGSVKRLSISELV 719