RPSBLAST alignment for GI: 254780353 and conserved domain: cd00187

>gnl|CDD|29149 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.. Length = 445

 Score =  504 bits (1300), Expect = e-143
 Identities = 206/447 (46%), Positives = 294/447 (65%), Gaps = 7/447 (1%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPV RRI++AM + GL      KK AR+VG+V GK HPHGD S+YD++V
Sbjct: 2   GRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIV 61

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F    PL+  QGNFG+ DGD AAA RYTE R++ +A L+L  +D+  VDF   Y+
Sbjct: 62  RMAQDFSNNIPLLDPQGNFGSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYD 121

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
            ++ EP V P  FPNLL NG+SGIAVGMAT+IP HN++E+ +A  ALIDNPE SI++L+E
Sbjct: 122 GQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREVIDALRALIDNPEASIDELME 181

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I GPDFPTGGII E R  I E+Y  GRG + +R ++ +E+   G   I +TE+PYQV K
Sbjct: 182 IIKGPDFPTGGII-EGRAGIREAYETGRGRYIIRGKYEIEDD-EGRNTIEITELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           ++L EKIAEL+  K+I  + D+RDES  E +R V+  K  ++  ++++  ++ ++ ++T 
Sbjct: 240 AKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAM-AEVVLNGLYKVTKLQTT 298

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           F +NM        P+ + L  IL+E+L HR EV  RR  + +   + R+ IL+GLL A L
Sbjct: 299 FGINMVAFDPNGRPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAIL 358

Query: 399 NIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           NIDE+I +IR+ D+ K  ++        +E Q DAIL++RLR L KLE  ++  EL  L 
Sbjct: 359 NIDEVINLIRSSDEAKKALIEELEKLGFSEIQADAILDMRLRRLTKLEREKLLKELKELE 418

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREV 482
           AE E ++ +L S ++  +    E+ E 
Sbjct: 419 AEIEDLEKILASEERPKDLWKEELDEF 445