RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A
[Candidatus Liberibacter asiaticus str. psy62]
(753 letters)
>gnl|CDD|30537 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 726 bits (1876), Expect = 0.0
Identities = 312/746 (41%), Positives = 449/746 (60%), Gaps = 24/746 (3%)
Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
E ++ + + ++ YL YA+S I RA+PD+RDG KPV RRI++AM E+GL +K
Sbjct: 5 SEEIEPIDIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMFELGLTPDKKYK 64
Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
KSARIVG+V+GK HPHGD S+YD+LVR+AQ F RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65 KSARIVGDVMGKYHPHGDSSIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTE 124
Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
AR++++AE +L+ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+IP
Sbjct: 125 ARLSKIAEELLEDIDKDTVDFVPNYDGSEKEPEVLPARFPNLLVNGSSGIAVGMATNIPP 184
Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
HN+ E+ +A +ALIDNP+ +I++L+E I GPDFPTGGII+ R I E+Y GRG RVR
Sbjct: 185 HNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIII-GRSGIREAYETGRGSIRVR 243
Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
A+ +E+ G IV+TEIPYQV K++LIEKIAEL+ K+I + DIRDES + +RIV
Sbjct: 244 AKAEIEDTKNGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIRIV 303
Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
+ K R ++++ ++F L+D++T F +NM L GR P+V+ L IL E+L HR EV+
Sbjct: 304 IELK-RDAVAEVVLNNLFKLTDLQTSFNVNMLALVNGR-PKVLNLKEILSEFLEHRLEVV 361
Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
RR+ + + + R+ IL+GLLIA LNIDE+I IIR K +++RF L+E Q +
Sbjct: 362 TRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPEAKEELMARFGLSEKQAE 421
Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
AIL+LRLR L LEE +I+ EL L E ++ +L S ++ + I E+ E+K+ F
Sbjct: 422 AILDLRLRRLTGLEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGD- 480
Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-LSALHFK 546
RRT E + + +I +E + V +S++G+I+ LK + +S L K
Sbjct: 481 ----ERRTEIVE--EEEDEIEDEDLIAEEDVVVTLSHKGYIKRVPLKGYEAQRVSGLGLK 534
Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
EGD L+ A+T D +L ++ G+ Y L L S R GE I L+ L + I
Sbjct: 535 EGDFLERLFEANTHDTLLFFTSKGRVYKLKVYELPEGSRRSRGEPIVNLLSLEKGEKITA 594
Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVA 662
+ L + + KG SE KGK +K+ +++ V + D +
Sbjct: 595 VLPVNDDQYLFLATKKGYVKKTSLSEFKNIRSKGKIAIKLKEGDELVSVSLTSDGDDDIL 654
Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYN 720
+V N K L F ++ EM RG KGV+ K+G V + + + R Y
Sbjct: 655 LVTSNGKALRFPESEVREMGRGAKGVKGIKLKEGD-KVVSLSVVEDDEAKLLTVTERGYG 713
Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
+ + KRGG G ++ KG R
Sbjct: 714 KRTKISEYPVTKRGGKGVILIKGTKR 739
>gnl|CDD|144201 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 428
Score = 518 bits (1337), Expect = e-147
Identities = 200/436 (45%), Positives = 281/436 (64%), Gaps = 17/436 (3%)
Query: 41 RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
RAIPD+RDG KPV RRI++AM E+GL+ +KK AR+VG+V+GK HPHGD S+YD+LVR
Sbjct: 1 RAIPDVRDGLKPVQRRILYAMFELGLNLDKKYKKVARLVGDVMGKYHPHGDASIYDALVR 60
Query: 101 LAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
+AQ FV PL+ GQGNFG+ DGD AAA RYTEAR++++A + + +D+D VDF Y+
Sbjct: 61 MAQDFVGNIPLLDGQGNFGSRLDGDKAAAMRYTEARLSKIARELFKDIDKDTVDFVPNYD 120
Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
+ EP V P PNLL NG SGIAVGMAT+IP HN+ E+ +A +AL+D PEI++ L
Sbjct: 121 GSEKEPTVLPPIIPNLLVNGASGIAVGMATNIPPHNLGEVIDALIALLDGPEITL---LL 177
Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
I GPDFPTGG I+ I E+Y+ GRG VRA+ +EE IV+TE+PY V
Sbjct: 178 KIPGPDFPTGGGII-GSGGIREAYKTGRGKITVRAKIEIEE----RKTIVITELPYGVWT 232
Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
+LIE I EL+ +I DIRDES VRIV+ K R DP++++ ++ + +++ F
Sbjct: 233 EKLIESIEELVKNGKIK-GSDIRDESDRGVRIVIELK-RGADPEVVLNKLYKKTKLQSSF 290
Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
N VL P+ + L ILKE+L HR EV RR + ++ ++ R+ IL+GLL A
Sbjct: 291 STNNLVL-FDGGPKYLNLKEILKEFLEHRLEVYKRRKEYLLEKLEERLHILEGLLKALNK 349
Query: 400 IDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
ID +I +IR K K ++ L+E Q D +L++RLR L K E +++ E++ L
Sbjct: 350 IDFVIEVIRGSIDLNKAKKELIEE--LSEIQADYLLDMRLRRLTKEEIEKLEKEIEELEK 407
Query: 457 EKEKIDSLLNSGKQQW 472
E +++ +L S K+ W
Sbjct: 408 EIAELEKILASEKKLW 423
>gnl|CDD|29149 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in DNA
topology by catalysing the concerted breakage and
rejoining of DNA strands during normal cellular growth..
Length = 445
Score = 504 bits (1300), Expect = e-143
Identities = 206/447 (46%), Positives = 294/447 (65%), Gaps = 7/447 (1%)
Query: 40 ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
RA+PD+RDG KPV RRI++AM + GL KK AR+VG+V GK HPHGD S+YD++V
Sbjct: 2 GRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIV 61
Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
R+AQ F PL+ QGNFG+ DGD AAA RYTE R++ +A L+L +D+ VDF Y+
Sbjct: 62 RMAQDFSNNIPLLDPQGNFGSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYD 121
Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
++ EP V P FPNLL NG+SGIAVGMAT+IP HN++E+ +A ALIDNPE SI++L+E
Sbjct: 122 GQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREVIDALRALIDNPEASIDELME 181
Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
I GPDFPTGGII E R I E+Y GRG + +R ++ +E+ G I +TE+PYQV K
Sbjct: 182 IIKGPDFPTGGII-EGRAGIREAYETGRGRYIIRGKYEIEDD-EGRNTIEITELPYQVNK 239
Query: 280 SRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
++L EKIAEL+ K+I + D+RDES E +R V+ K ++ ++++ ++ ++ ++T
Sbjct: 240 AKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAM-AEVVLNGLYKVTKLQTT 298
Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
F +NM P+ + L IL+E+L HR EV RR + + + R+ IL+GLL A L
Sbjct: 299 FGINMVAFDPNGRPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAIL 358
Query: 399 NIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
NIDE+I +IR+ D+ K ++ +E Q DAIL++RLR L KLE ++ EL L
Sbjct: 359 NIDEVINLIRSSDEAKKALIEELEKLGFSEIQADAILDMRLRRLTKLEREKLLKELKELE 418
Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREV 482
AE E ++ +L S ++ + E+ E
Sbjct: 419 AEIEDLEKILASEERPKDLWKEELDEF 445
>gnl|CDD|35576 KOG0355, KOG0355, KOG0355, DNA topoisomerase type II [Chromatin
structure and dynamics].
Length = 842
Score = 80.3 bits (198), Expect = 2e-15
Identities = 39/357 (10%), Positives = 80/357 (22%), Gaps = 23/357 (6%)
Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
N V++ E + I + + + S D
Sbjct: 75 NTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDDEKKVTGGR 134
Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
++ D ++A + + D YT+
Sbjct: 135 NGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTDE----DYTKIT 190
Query: 136 MTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
+ E ++ +D+D V + + V K N
Sbjct: 191 FSPDLEKFKMKELDDDIVALMARRAYDLAGSVK-SVKVELNGKNIPVKGFYDYVKMYLE- 248
Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV-- 252
L + ++ + F + S V S +GG V
Sbjct: 249 --VLWLNDDLKPLHEVLNFRWEVALALSDVGFQ--------QVSFVNSIATTKGGTHVDY 298
Query: 253 ---RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
+ + +V + + K+ L + LI R
Sbjct: 299 VVDQIVAKLIDVVKKKKVKKDISVKPFQVKNHLWVFVNCLIENPTFESQTKERLTLRPKR 358
Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
+ + ++ + S + + L+ R GI K A
Sbjct: 359 FGSDCELSEKFTKAIELKGVVE-SILSKSLNKYKDDLAKKRGKLTSRSKGIPKLEDA 414
Score = 62.6 bits (152), Expect = 3e-10
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 38/178 (21%)
Query: 41 RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHGD 91
+IP L DG KP R+++ FK K A++ G V + H HG+
Sbjct: 663 DSIPSLVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSAYH-HGE 711
Query: 92 QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
QS+ ++V LAQ FV G AA+ RY +++ + L+ D+
Sbjct: 712 QSLMSTIVNLAQDFV----------------GKDAASARYIFTKLSPLTRLLFPPADDLL 755
Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
+ + + + EP P P +L NG GI G +T IP++N +EI + LI+
Sbjct: 756 LKYLNEDGQR-VEPEYCPII-PMVLVNGAEGIGTGWSTFIPNYNPREIVKNIRRLING 811
>gnl|CDD|39067 KOG3863, KOG3863, KOG3863, bZIP transcription factor NRF1
[Transcription].
Length = 604
Score = 37.3 bits (86), Expect = 0.016
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL----------RKLEEYQ-I 447
++DEII + ++ M+S++ LTE Q+ I ++R R RKL+ +
Sbjct: 460 SVDEIINLPVDDFN---EMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNL 516
Query: 448 KSELDNLLAEKEKI----DSLLNSGKQQWNQIACEIREV 482
+ E++ L EKE++ D L ++ Q++ +EV
Sbjct: 517 EDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEV 555
>gnl|CDD|146561 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain,
beta-propeller. This repeat is found as 6 tandem copies
at the C-termini of GyrA and ParC DNA gyrases. It is
predicted to form 4 beta strands and to probably form a
beta-propeller structure. This region has been shown to
bind DNA non-specifically and may stabilize the
DNA-topoisomerase complex.
Length = 50
Score = 34.8 bits (81), Expect = 0.086
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
D + ++ + + + PE RG KGV+ + K+G
Sbjct: 1 EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGD 40
Score = 29.8 bits (68), Expect = 3.3
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 613 KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTG 658
LL+++SKG SE R KG + + +K+ V+ V
Sbjct: 3 DLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGDKVVSVLVVNE 50
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 31.8 bits (73), Expect = 0.71
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
+I ++DE I +I + D P + + F+ ++++D IL R RS
Sbjct: 348 IIKVDDLDEAIKVINSRDTPLALYI--FTDDKSEIDHILT-RTRS 389
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 31.0 bits (71), Expect = 1.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 388 EILKGLL--IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
EI +L I Y ++DE+I I KPKP+ + FS + V+ +L
Sbjct: 337 EIFGPVLPIITYEDLDEVIEYIN--AKPKPLALYVFSKDKANVNKVLA 382
>gnl|CDD|35230 KOG0006, KOG0006, KOG0006, E3 ubiquitin-protein ligase (Parkin
protein) [Posttranslational modification, protein
turnover, chaperones].
Length = 446
Score = 30.9 bits (69), Expect = 1.5
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 479 IREVKEIFSKSTDL--GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
I ++KE+ +K + + R F ++ T+Q + ++ T ++ R W + K +
Sbjct: 26 IFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPWRKGQKFN 85
Query: 537 SV-------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
S L+ GDS+ + T R S G++
Sbjct: 86 STGGDENEPSLTNGATLPGDSVGLTAKLTTDSRKDAGSPAGRS 128
>gnl|CDD|37186 KOG1975, KOG1975, KOG1975, mRNA cap methyltransferase [RNA
processing and modification].
Length = 389
Score = 30.3 bits (68), Expect = 1.9
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEG 708
D + ++ GKG L + GI + I I E
Sbjct: 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV 151
>gnl|CDD|34842 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 30.0 bits (67), Expect = 2.2
Identities = 49/287 (17%), Positives = 90/287 (31%), Gaps = 45/287 (15%)
Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
EI + P+ V +L N + A +L L L + ++ + N+ + ++I
Sbjct: 2607 EIPDALEKLVSG-PLFVHEKAL--NALKACGSLFLWVLARYLLAKLMLSISNME-QTDEI 2662
Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT------------------------ 497
LL++ K+ +I E E EI + L
Sbjct: 2663 AVLLHNLKKSRKEIEEEESESMEIEDRIDALKSEYNASVKRLESIRVEIAMFDEKALMYN 2722
Query: 498 -TFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKEGDSL 551
+ CE+S + + I ++ + WI RS H +D+S L + +
Sbjct: 2723 KSICELSSEFEKWRRMKSKYLCAIRYMLMSSEWILDHEDRSGFIHRLDVSFL-LRTKRFV 2781
Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
L ++L + + R + + L N+ T +S
Sbjct: 2782 STLLEDKNYRQVLSSCSLYGNDVISHSC---DRFDRDVYRALKHQMDNRTHSTILTSNSK 2838
Query: 612 CK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
S AF VE+S + +G L L+
Sbjct: 2839 TNPYKEYTYNDSWAEAFEVEDSGDLYKFEEG---LLELIVGHAPLIY 2882
>gnl|CDD|37391 KOG2180, KOG2180, KOG2180, Late Golgi protein sorting complex,
subunit Vps53 [Intracellular trafficking, secretion, and
vesicular transport].
Length = 793
Score = 30.0 bits (67), Expect = 2.7
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE----IFSKSTDLGRR 495
++LEEY+ + A +K+D +++ +R+ +E IF + R
Sbjct: 240 QQLEEYEQIFRENEEAASLDKLD-------RRYAWFKRLLRDFEEKWKPIFPADWHVAYR 292
Query: 496 RTT-FCEVSRADKATLQQAMIEK 517
T FC +R ++ + ++
Sbjct: 293 LTIEFCHQTRKQLESILKRRKKE 315
>gnl|CDD|29362 cd01940, Fructoselysine_kinase_like, Fructoselysine kinase-like.
Fructoselysine is a fructoseamine formed by glycation, a
non-enzymatic reaction of glucose with a primary amine
followed by an Amadori rearrangement, resulting in a
protein that is modified at the amino terminus and at
the lysine side chains. Fructoseamines are typically
metabolized by fructoseamine-3-kinase, especially in
higher eukaryotes. In E. coli, fructoselysine kinase has
been shown in vitro to catalyze the phosphorylation of
fructoselysine. It is proposed that fructoselysine is
released from glycated proteins during human digestion
and is partly metabolized by bacteria in the hind gut
using a protein such as fructoselysine kinase. This
family is found only in bacterial sequences, and its
oligomeric state is currently unknown..
Length = 264
Score = 29.8 bits (67), Expect = 3.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
+LK VD+S KEG++ + DRI LS G
Sbjct: 55 RSTLKRLGVDISHCRVKEGENAVADVELVDGDRIFGLSNKG 95
>gnl|CDD|36470 KOG1256, KOG1256, KOG1256, Long-chain acyl-CoA synthetases
(AMP-forming) [Lipid transport and metabolism].
Length = 691
Score = 29.1 bits (65), Expect = 4.8
Identities = 15/112 (13%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
+ +V +YD+ ++ ++ + V+ ++ + K S +K +
Sbjct: 154 YAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKEN---DSLPSLKAI 210
Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF 703
+++ D + EN + ++S D+ E+ + + + IC+
Sbjct: 211 IQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICY 262
>gnl|CDD|38908 KOG3704, KOG3704, KOG3704, Heparan sulfate D-glucosaminyl
3-O-sulfotransferase [Posttranslational modification,
protein turnover, chaperones].
Length = 360
Score = 28.8 bits (64), Expect = 5.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
R +G+ G+ HPH D V L +PF ++ ++GQ +FG
Sbjct: 317 RCLGKSKGRTHPHIDPEVIRRLREFYRPFNLKFYQMTGQ-DFG 358
>gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the
GT1 family of glycosyltransferases. wbuB in E. coli is
involved in the biosynthesis of the O26 O-antigen. It
has been proposed to function as an
N-acetyl-L-fucosamine (L-FucNAc) transferase..
Length = 394
Score = 28.8 bits (65), Expect = 6.3
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS------------IPSHNVQEICEAAL 204
+ V PSK +A G +A S +P + + + A L
Sbjct: 301 PLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAIL 360
Query: 205 ALIDNPE 211
L+D+PE
Sbjct: 361 ELLDDPE 367
>gnl|CDD|146633 pfam04100, Vps53_N, Vps53-like, N-terminal. Vps53 complexes with
Vps52 and Vps54 to form a multi- subunit complex
involved in regulating membrane trafficking events.
Length = 375
Score = 28.2 bits (63), Expect = 8.8
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE----IFSKSTDLGRR 495
++LEEY+ + A +KID +++ +R+ +E IF + R
Sbjct: 225 QQLEEYEQIFRENEEAAWLDKID-------RRYAWFKRLLRDFEEKYGPIFPADWHVAER 277
Query: 496 RTT-FCEVSRADKATLQQAMIEK 517
T FC V+R A + ++
Sbjct: 278 LTVEFCHVTRKQLAKILVRRDKE 300
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 27.9 bits (63), Expect = 10.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 395 IAYLNIDEIIAIIRNEDKP 413
+ Y +DE I II++ KP
Sbjct: 339 LTYDTLDEAIEIIKSRPKP 357
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.137 0.389
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 8,949,653
Number of extensions: 493176
Number of successful extensions: 1160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1136
Number of HSP's successfully gapped: 32
Length of query: 753
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 652
Effective length of database: 4,081,228
Effective search space: 2660960656
Effective search space used: 2660960656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)