RPSBLAST alignment of GI: 254780353 and protein with PDBid: 1bjt

>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 1bgw_A 2rgr_A* Length = 793

 Score =  230 bits (586), Expect = 1e-60
 Identities = 93/539 (17%), Positives = 193/539 (35%), Gaps = 90/539 (16%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L   
Sbjct: 252 GTVLDPTLKEIPISDFINKELILFSLADN-IRSIPNVLDGFKPGQRKVLYGCFKKNLKSE 310

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR----YPLISGQGNFGNIDGDS 125
               + A  V E     + HG+QS+  +++ LAQ FV        L +G        G  
Sbjct: 311 LKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKD 368

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY    + ++   I    D+    +     +   EP  +    P +L NG  GI  
Sbjct: 369 AAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKT-VEPEWYLPILPMILVNGAEGIGT 427

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G +T IP  N  EI +    L+++ E+         + P F                   
Sbjct: 428 GWSTYIPPFNPLEIIKNIRHLMNDEELE-------QMHPWFRGWT-----------GTIE 469

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR--IPLLEDIRD 303
                R R    +E++G     + +TE+P +   S + E +   +       P ++D+ +
Sbjct: 470 EIEPLRYRMYGRIEQIGD--NVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEE 527

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILK 362
           +  ++++ ++      +     +        +     +NM      G++ +   ++ IL 
Sbjct: 528 QHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILS 587

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKG------------LLIAYLNIDEIIAIIRNE 410
           E+   R E   +R     + +   VE                L +     + II  + N 
Sbjct: 588 EFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENL 647

Query: 411 DKPK----------------------------------------PVMVSRFSLTENQVDA 430
             P+                                          +++         + 
Sbjct: 648 GFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEY 707

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN-SGKQQWNQIACEIREVKEIFSK 488
           +L +R+ SL K    ++  +      E   +++LL  S K  WN    +++  +  + +
Sbjct: 708 LLGMRIWSLTKERYQKLLKQKQEKETE---LENLLKLSAKDIWNT---DLKAFEVGYQE 760