RPSBLAST alignment of GI: 254780353 and protein with PDBid: 2nov

>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* Length = 496
 Score =  429 bits (1104), Expect = e-120
 Identities = 170/493 (34%), Positives = 301/493 (61%), Gaps = 10/493 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II   R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQ-GRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  +   ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPIL-SSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR    +   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA 505
             R ++  + ++A
Sbjct: 478 --RLSSLEDTAKA 488