RPSBLAST alignment of GI: 254780353 and protein with PDBid: 2nov
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* Length = 496
Score = 429 bits (1104), Expect = e-120
Identities = 170/493 (34%), Positives = 301/493 (61%), Gaps = 10/493 (2%)
Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS
Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62
Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR
Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122
Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182
Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
+ E+ +AA+ +ID+P I+KL+E++ GPDFPTG II R+ I ++Y G+G VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQ-GRDEIKKAYETGKGRVVVRSK 241
Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
+E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D +
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301
Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
+ + +L++ +F +D++ + NM + QV + + ++AHRREV+ R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPIL-SSYIAHRREVILAR 360
Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
S F + ++R+ I++GL+ +DE+IA+IR + K + + TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420
Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
L+L L + ++ E L + + +++ + +N + E+REVK+ F+
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477
Query: 493 GRRRTTFCEVSRA 505
R ++ + ++A
Sbjct: 478 --RLSSLEDTAKA 488