RPSBLAST alignment of GI: 254780353 and protein with PDBid: 3l4j

>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757

 Score =  290 bits (744), Expect = 5e-79
 Identities = 96/541 (17%), Positives = 198/541 (36%), Gaps = 90/541 (16%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 238 EPGTVLDPTLKEIPISDFINKELILFSLADN-IRSIPNVLDGFKPGQRKVLYGCFKKNLK 296

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDG 123
                 + A  V E     + HG+QS+  +++ LAQ FV      L+   G FG     G
Sbjct: 297 SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 354

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AAA RY    + ++   I    D+    +     +   EP  +    P +L NG  GI
Sbjct: 355 KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKT-VEPEWYLPILPMILVNGAEGI 413

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +T IP  N  EI +    L+++ E  +E++  +  G       I            
Sbjct: 414 GTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRGWTGTIEEI------------ 459

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR--IPLLEDI 301
                  R R    +E++G     + +TE+P +   S + E +   +       P ++D+
Sbjct: 460 ----EPLRYRMYGRIEQIGD--NVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 513

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGI 360
            ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 514 EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 573

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKG------------LLIAYLNIDEIIAIIR 408
           L E+   R E   +R     + +   VE                L +     + II  + 
Sbjct: 574 LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELE 633

Query: 409 NEDKPK----------------------------------------PVMVSRFSLTENQV 428
           N   P+                                          +++         
Sbjct: 634 NLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY 693

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN-SGKQQWNQIACEIREVKEIFS 487
           + +L +R+ SL K    ++  +      E   +++LL  S K  WN    +++  +  + 
Sbjct: 694 EYLLGMRIWSLTKERYQKLLKQKQEKETE---LENLLKLSAKDIWNT---DLKAFEVGYQ 747

Query: 488 K 488
           +
Sbjct: 748 E 748