Query gi|254780354|ref|YP_003064767.1| hypothetical protein CLIBASIA_01195 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 30 09:13:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780354.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r7g_A PP110, retinoblastoma-a 17.9 55 0.0023 14.2 3.5 19 10-28 101-119 (347)
2 2k59_B Neuronal acetylcholine 7.1 1.3E+02 0.0056 12.4 2.4 18 20-37 8-25 (28)
3 2nnu_B HUNK1 protein, bromodom 4.8 1.9E+02 0.0079 11.6 1.4 12 6-17 11-22 (26)
4 2d48_A Interleukin-4; four hel 2.8 2.9E+02 0.012 10.7 1.6 14 7-20 115-128 (129)
5 1ijx_A Secreted frizzled-relat 2.7 3E+02 0.013 10.6 1.2 7 16-22 56-62 (127)
6 2zko_A NS1, NS1A, non-structur 2.5 3.2E+02 0.013 10.5 1.4 8 25-32 14-21 (73)
7 1oft_A SULA, hypothetical prot 2.2 3.3E+02 0.014 10.4 0.0 12 11-22 14-25 (161)
8 3geb_A EYES absent homolog 2; 2.2 3.6E+02 0.015 10.3 1.4 8 26-33 218-225 (274)
9 2i15_A A05_ORF129, hypothetica 2.2 3.6E+02 0.015 10.2 2.8 16 8-23 60-75 (135)
10 2kr6_A Presenilin-1; protease, 2.1 3.6E+02 0.015 10.2 2.0 14 24-37 116-129 (176)
No 1
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=17.90 E-value=55 Score=14.24 Aligned_cols=19 Identities=37% Similarity=0.724 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q gi|254780354|r 10 VIFQEAFFICSLFVVIACF 28 (38)
Q Consensus 10 vifqeafficslfvviacf 28 (38)
-.|..+.+.|++=+|++++
T Consensus 101 ~~FhrsLlACc~E~Vl~~y 119 (347)
T 2r7g_A 101 NIFHMSLLACALEVVMATY 119 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 5889999999999999981
No 2
>2k59_B Neuronal acetylcholine receptor subunit beta-2; second transmembrane domain, beta 2 subunit, cell junction, disease mutation, epilepsy, glycoprotein; NMR {Synthetic}
Probab=7.10 E-value=1.3e+02 Score=12.37 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999732
Q gi|254780354|r 20 SLFVVIACFVWIISEIVL 37 (38)
Q Consensus 20 slfvviacfvwiiseivl 37 (38)
|.......|...||.||-
T Consensus 8 svllaltvfllliskivp 25 (28)
T 2k59_B 8 SVLLALTVFLLLISKIVP 25 (28)
T ss_dssp HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999960079
No 3
>2nnu_B HUNK1 protein, bromodomain-containing protein 4; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Homo sapiens}
Probab=4.77 E-value=1.9e+02 Score=11.64 Aligned_cols=12 Identities=50% Similarity=0.850 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 889999999999
Q gi|254780354|r 6 CDLRVIFQEAFF 17 (38)
Q Consensus 6 cdlrvifqeaff 17 (38)
.||--||.|..|
T Consensus 11 sdllsifeenlf 22 (26)
T 2nnu_B 11 SDLLSIFEENLF 22 (26)
T ss_pred HHHHHHHHHHHC
T ss_conf 879999998610
No 4
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=2.79 E-value=2.9e+02 Score=10.69 Aligned_cols=14 Identities=36% Similarity=0.729 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999999999
Q gi|254780354|r 7 DLRVIFQEAFFICS 20 (38)
Q Consensus 7 dlrvifqeaffics 20 (38)
+|+.|.||-|.-||
T Consensus 115 rLKtImqekYskc~ 128 (129)
T 2d48_A 115 RLKTIMREKYSKCS 128 (129)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999876016
No 5
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.90A {Mus musculus} SCOP: a.141.1.1
Probab=2.68 E-value=3e+02 Score=10.62 Aligned_cols=7 Identities=43% Similarity=1.772 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780354|r 16 FFICSLF 22 (38)
Q Consensus 16 fficslf 22 (38)
+|+||++
T Consensus 56 ~flCsl~ 62 (127)
T 1ijx_A 56 FFLCAMY 62 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999700
No 6
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=2.52 E-value=3.2e+02 Score=10.52 Aligned_cols=8 Identities=38% Similarity=1.589 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780354|r 25 IACFVWII 32 (38)
Q Consensus 25 iacfvwii 32 (38)
..||.|-+
T Consensus 14 vdcfLWHv 21 (73)
T 2zko_A 14 VDCFLWHV 21 (73)
T ss_dssp HHHHHHHH
T ss_pred EHHHHHHH
T ss_conf 01367889
No 7
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=2.21 E-value=3.3e+02 Score=10.42 Aligned_cols=12 Identities=42% Similarity=0.628 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780354|r 11 IFQEAFFICSLF 22 (38)
Q Consensus 11 ifqeafficslf 22 (38)
.|||+||--+.+
T Consensus 14 ~~~~~~~~~~~~ 25 (161)
T 1oft_A 14 LFQEAFWASNGA 25 (161)
T ss_dssp ------------
T ss_pred HHHHHHHCCCCC
T ss_conf 588988626798
No 8
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=2.17 E-value=3.6e+02 Score=10.25 Aligned_cols=8 Identities=38% Similarity=0.949 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780354|r 26 ACFVWIIS 33 (38)
Q Consensus 26 acfvwiis 33 (38)
.||-||.+
T Consensus 218 sCFerI~~ 225 (274)
T 3geb_A 218 SCFERIMQ 225 (274)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 9
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural genomics, MPN423, hypothetical protien, all alpha structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP: a.291.1.1
Probab=2.16 E-value=3.6e+02 Score=10.25 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780354|r 8 LRVIFQEAFFICSLFV 23 (38)
Q Consensus 8 lrvifqeafficslfv 23 (38)
|+-....||||.|-.|
T Consensus 60 lkpmlsdaffissevv 75 (135)
T 2i15_A 60 LKPMLSDAFFISSEVV 75 (135)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 5166422576369999
No 10
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=2.11 E-value=3.6e+02 Score=10.21 Aligned_cols=14 Identities=50% Similarity=0.850 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999732
Q gi|254780354|r 24 VIACFVWIISEIVL 37 (38)
Q Consensus 24 viacfvwiiseivl 37 (38)
+++||+-|+.-+.+
T Consensus 116 ~~~c~vail~GL~~ 129 (176)
T 2kr6_A 116 TIACFVAILIGLCL 129 (176)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
Done!