BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780354|ref|YP_003064767.1| hypothetical protein CLIBASIA_01195 [Candidatus Liberibacter asiaticus str. psy62] (38 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780354|ref|YP_003064767.1| hypothetical protein CLIBASIA_01195 [Candidatus Liberibacter asiaticus str. psy62] gi|254040031|gb|ACT56827.1| hypothetical protein CLIBASIA_01195 [Candidatus Liberibacter asiaticus str. psy62] Length = 38 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 38/38 (100%), Positives = 38/38 (100%) Query: 1 MPLSFCDLRVIFQEAFFICSLFVVIACFVWIISEIVLN 38 MPLSFCDLRVIFQEAFFICSLFVVIACFVWIISEIVLN Sbjct: 1 MPLSFCDLRVIFQEAFFICSLFVVIACFVWIISEIVLN 38 Searching..................................................done Results from round 2 CONVERGED! >gi|254780354|ref|YP_003064767.1| hypothetical protein CLIBASIA_01195 [Candidatus Liberibacter asiaticus str. psy62] gi|254040031|gb|ACT56827.1| hypothetical protein CLIBASIA_01195 [Candidatus Liberibacter asiaticus str. psy62] Length = 38 Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 38/38 (100%), Positives = 38/38 (100%) Query: 1 MPLSFCDLRVIFQEAFFICSLFVVIACFVWIISEIVLN 38 MPLSFCDLRVIFQEAFFICSLFVVIACFVWIISEIVLN Sbjct: 1 MPLSFCDLRVIFQEAFFICSLFVVIACFVWIISEIVLN 38 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.346 0.152 0.524 Lambda K H 0.267 0.0484 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 927,864,723 Number of Sequences: 14124377 Number of extensions: 25733823 Number of successful extensions: 204669 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 204664 Number of HSP's gapped (non-prelim): 6 length of query: 38 length of database: 4,842,793,630 effective HSP length: 12 effective length of query: 26 effective length of database: 4,673,301,106 effective search space: 121505828756 effective search space used: 121505828756 T: 11 A: 40 X1: 16 ( 8.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.7 bits) S2: 76 (33.6 bits)