HHsearch alignment for GI: 254780355 and conserved domain: cd06109
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=0 Score=869.15 Aligned_cols=347 Identities=31% Similarity=0.516 Sum_probs=329.8
Q ss_pred CCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 88786238787565433447778989931999975089899999998187999899999999886406899899999985
Q gi|254780355|r 44 PAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMG 123 (429)
Q Consensus 44 pG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~~ 123 (429)
T Consensus 1 PGl~gv~v~~s~Is~idg~~G~L~YRG~~i~dLa~~~~fEeva~LL~~G~lPt~~el~~f~~~l~~~~~lp~~~~~~~~~ 80 (349)
T cd06109 1 PGLEGVVAAETVLSDVDGEAGRLIIRGYSVEDLAGSASFEDVAALLWNGFFPDLPELEEFRAALAAARALPDVVAALLPA 80 (349)
T ss_pred CCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99898505577682563899889898911999972499999999996898979899999999999723674999999974
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 12476525789999999875206855767878898889999999999999999972798534888642468877876428
Q gi|254780355|r 124 FPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFS 203 (429)
Q Consensus 124 ~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~ 203 (429)
T Consensus 81 ~-~~~~pm~~l~~~~s~l~~-----------~~~~~~a~~liA~~p~i~a~~~r~~~g~~~~~p~~~~~~a~nfl~ml~g 148 (349)
T cd06109 81 L-AGLDPMDALRALLALLPD-----------SPDLATALRLLAAAPVITAALLRLSRGKQPIAPDPSLSHAADYLRMLTG 148 (349)
T ss_pred C-CCCCHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 6-456869999999885598-----------5428999999989999999999997699988998530489999987238
Q ss_pred CCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCH
Q ss_conf 98410147969999987563501367876301555544205654246776755421002220352899999862155351
Q gi|254780355|r 204 VPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLER 283 (429)
Q Consensus 204 ~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~ 283 (429)
T Consensus 149 ~-----~~~~~~~~~ld~~liL~ADHe~NaSTftarvvAST~ad~ys~v~aai~aL~GPlHGgA~~~v~~~l~ei~~~~~ 223 (349)
T cd06109 149 E-----PPSEAHVRALDAYLVTVADHGMNASTFTARVIASTEADLTSAVLGAIGALKGPLHGGAPGPVLDMLDAIGTPEN 223 (349)
T ss_pred C-----CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHH
T ss_conf 9-----99999999999999998215665057777887515753999999888634788657767999999999588346
Q ss_pred HHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCCCC
Q ss_conf 279999998214786143027743555540346899999998886087765179999999999961--153145798778
Q gi|254780355|r 284 IPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALE--DEYFIERKLYPN 361 (429)
Q Consensus 284 v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~--d~~~~~r~l~pN 361 (429)
T Consensus 224 ~~~~i~~~l~~~~--~i~GfGHrvY~~~DPRa~~l~~~~~~l~~-----~~~~~~~~~~i~~~a~~~l~~~~~~~~l~pN 296 (349)
T cd06109 224 AEAWLREALARGE--RLMGFGHRVYRVRDPRADVLKAAAERLGA-----PDERLEFAEAVEQAALALLREYKPGRPLETN 296 (349)
T ss_pred HHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999983578--75378988789999449999999998737-----8728999999999999999984577898748
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 4478899999849996685899999999899999999970789830045621058
Q gi|254780355|r 362 VDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTG 416 (429)
Q Consensus 362 vDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G 416 (429)
T Consensus 297 VDf~s~~l~~~lG~p~~~~t~lFa~~R~~GW~AH~~Eq~~~--~~liRP~~~YvG 349 (349)
T cd06109 297 VEFYTALLLEALGLPREAFTPTFAAGRTAGWTAHVLEQART--GRLIRPQSRYVG 349 (349)
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC
T ss_conf 27889999998198855667999999999999999999867--997588780679