HHsearch alignment for GI: 254780355 and conserved domain: cd06112
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=0 Score=940.58 Aligned_cols=372 Identities=42% Similarity=0.755 Sum_probs=357.9
Q ss_pred ECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 88887862387875654334477789899319999750898999999981879998999999998864068998999999
Q gi|254780355|r 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFF 121 (429)
Q Consensus 42 ~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i 121 (429)
T Consensus 1 ~~pGL~gv~v~~T~Is~Idg~~G~L~YRGy~i~dLa~~~~fEeva~LL~~G~LP~~~el~~f~~~l~~~~~l~~~v~~~~ 80 (373)
T cd06112 1 YIPGLAGVPAAESSISYIDGKNGILEYRGYDIEELAEYSSFEEVALLLLDGDLPTAAELEEFDKELRQHRRVKYNIRDMM 80 (373)
T ss_pred CCCCCCCCCEEEEECEEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98977898145776817737888798899049998635999999999976989699999999999998456875789998
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8512476525789999999875206855-767878898889999999999999999972798534888642468877876
Q gi|254780355|r 122 MGFPSSAHPMAMLVSAVGALSSFYYSPS-GVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHM 200 (429)
Q Consensus 122 ~~~p~~ahPM~~L~~~vsaL~a~~~~~~-~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~M 200 (429)
T Consensus 81 ~~~p~~~hpm~~l~~~vs~l~~~~~~~~~~~~~~~~~~~~~~rliA~~p~i~A~~~r~~~g~~~i~p~~~l~~a~nfl~m 160 (373)
T cd06112 81 KCFPETGHPMDMLQATVAALGMFYPKPEVLKPNPDYIDAATVKLIAKMPTLVAMWARIRNGDDPIEPRPDLDYAENFLYM 160 (373)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 70875479588999999998732865334689999999999999999999999999997699988899630499999999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 42898410147969999987563501367876301555544205654246776755421002220352899999862155
Q gi|254780355|r 201 CFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 (429)
Q Consensus 201 l~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~ 280 (429)
T Consensus 161 l~g~-----~p~~~~~~~ld~~LiL~ADHe~NaSTfa~RvvaST~ad~ysav~aai~aL~GPLHGGAn~~v~~ml~ei~~ 235 (373)
T cd06112 161 LFGE-----EPDPATAKILDACLILHAEHTMNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANEDVLEMLEEIGS 235 (373)
T ss_pred HHCC-----CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 7078-----99999999999999687116775789999999658888899999999864687555789999999998499
Q ss_pred CCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 35127999999821478614302774355554034689999999888608776517999999999996115314579877
Q gi|254780355|r 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP 360 (429)
Q Consensus 281 ~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~p 360 (429)
T Consensus 236 ~~~~~~~i~~~l~~~~--~i~GFGHrvYk~~DPRa~~L~~~~~~l~~~~~~-~~~~~~~a~~ie~~~--~e~~~~k~l~p 310 (373)
T cd06112 236 PENVKAYLDKKLANKQ--KIWGFGHRVYKTKDPRATILQKLAEDLFAKMGE-LSKLYEIALEVERLC--EELLGHKGVYP 310 (373)
T ss_pred HHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH--HHHHCCCCCCC
T ss_conf 8889999999872688--778888765788994289999999999886177-567999999999999--99741479986
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 84478899999849996685899999999899999999970789830045621058876870685
Q gi|254780355|r 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPL 425 (429)
Q Consensus 361 NvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi 425 (429)
T Consensus 311 NVDfys~~l~~~lGip~~~~t~iFa~sR~~GW~AH~~Eq~~~--~~liRP~~~Y~G~~~~~~~p~ 373 (373)
T cd06112 311 NVDFYSGIVYKELGIPADLFTPIFAVARVAGWLAHWKEQLGD--NRIFRPTQIYIGEIDRKYVPL 373 (373)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCCC
T ss_conf 737799999999297957788999999999999999998647--985177660359998898999