HHsearch alignment for GI: 254780355 and conserved domain: cd06114

>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00  E-value=0  Score=1054.75  Aligned_cols=399  Identities=63%  Similarity=1.080  Sum_probs=390.4

Q ss_pred             EEEECCCCCCCCEEECCCC-CCCEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf             7523077787510100115-586189888878623878756543344777898993199997508989999999818799
Q gi|254780355|r   17 LPIKEGSLGSSVLDISFLH-KNGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELA   95 (429)
Q Consensus        17 lpi~~~~~~~~~~d~~~l~-~~G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLP   95 (429)
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~dPGL~~v~a~eT~Is~iDg~~G~L~YRGy~I~dLa~~~~FEEvayLLl~G~LP   80 (400)
T cd06114           1 LPVLEGTEGEKVIDISSLRKKTGVFTYDPGFMNTASCESAITYIDGEKGILRYRGYPIEQLAEKSSFLEVCYLLLYGELP   80 (400)
T ss_pred             CCCCCCCCCCCEEEHHHHHHHCCCEEECCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             98024788997145165586369687788878722687657015077857988991599986169999999999679798


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98999999998864068998999999851247652578999999987520685576787889888999999999999999
Q gi|254780355|r   96 NVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMI  175 (429)
Q Consensus        96 t~~el~~F~~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~  175 (429)
T Consensus        81 t~~el~~f~~~L~~~~~lp~~v~~~i~~~P~~~hPM~~L~t~vs~L~~~~~~~~~~~~~~~~~~~a~rLiA~~p~i~A~~  160 (400)
T cd06114          81 TAEQLQEFREEITRHTLVHEQMKRFFNGFPRDAHPMAILSAMVNALSAFYPDSLDVNDPEQRELAAIRLIAKVPTIAAMA  160 (400)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998568999999988513888785999999999988518655688999999999999998999999999


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             99727985348886424688778764289841014796999998756350136787630155554420565424677675
Q gi|254780355|r  176 YKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAG  255 (429)
Q Consensus       176 yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~ag  255 (429)
T Consensus       161 ~r~~~g~~~~~p~~~ls~a~NfL~Ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe~NaSTFaarvvaSTlsD~ysai~aa  240 (400)
T cd06114         161 YRYSIGQPFIYPDNDLSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHEQNASTSTVRMVGSSGANLFASISAG  240 (400)
T ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             99875998667998636999999998288764579999999999999988862367623776655424788788999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             54210022203528999998621553512799999982147861430277435555403468999999988860877651
Q gi|254780355|r  256 VACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDP  335 (429)
Q Consensus       256 i~aL~GPlHGGAne~v~~ml~~I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~  335 (429)
T Consensus       241 IgaLkGPLHGGAne~v~~ml~eIg~~~~~~~~i~~~~~~~~~~rimGfGHrVYk~~DPRa~~lk~~~~~l~~~~~~-~~~  319 (400)
T cd06114         241 IAALWGPLHGGANEAVLEMLEEIGSVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEVLAELGK-DDP  319 (400)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCH
T ss_conf             9864788777689999999998578651999999998647986302678776888994389999999999988377-537


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             79999999999961153145798778447889999984999668589999999989999999997078983004562105
Q gi|254780355|r  336 IAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYT  415 (429)
Q Consensus       336 ~~~~a~~le~~a~~d~~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~  415 (429)
T Consensus       320 ~~~ia~~ie~~a~~~~~~~~r~l~pNVDfysg~ly~~lGip~dlfT~iFaisR~~GW~AH~~Eq~~~~~nrliRP~~~Yv  399 (400)
T cd06114         320 LLEIAMELEEIALKDDYFIERKLYPNVDFYSGIILRALGIPTEMFTVLFALGRTPGWIAQWREMHEDPELKIGRPRQLYT  399 (400)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf             99999999999850011367898777035899999981988676369999999999999999998589986548878057


Q ss_pred             C
Q ss_conf             8
Q gi|254780355|r  416 G  416 (429)
Q Consensus       416 G  416 (429)
T Consensus       400 G  400 (400)
T cd06114         400 G  400 (400)
T ss_pred             C
T ss_conf             9