HHsearch alignment for GI: 254780355 and conserved domain: cd06114
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=0 Score=1054.75 Aligned_cols=399 Identities=63% Similarity=1.080 Sum_probs=390.4
Q ss_pred EEEECCCCCCCCEEECCCC-CCCEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 7523077787510100115-586189888878623878756543344777898993199997508989999999818799
Q gi|254780355|r 17 LPIKEGSLGSSVLDISFLH-KNGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELA 95 (429)
Q Consensus 17 lpi~~~~~~~~~~d~~~l~-~~G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLP 95 (429)
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~dPGL~~v~a~eT~Is~iDg~~G~L~YRGy~I~dLa~~~~FEEvayLLl~G~LP 80 (400)
T cd06114 1 LPVLEGTEGEKVIDISSLRKKTGVFTYDPGFMNTASCESAITYIDGEKGILRYRGYPIEQLAEKSSFLEVCYLLLYGELP 80 (400)
T ss_pred CCCCCCCCCCCEEEHHHHHHHCCCEEECCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 98024788997145165586369687788878722687657015077857988991599986169999999999679798
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999998864068998999999851247652578999999987520685576787889888999999999999999
Q gi|254780355|r 96 NVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMI 175 (429)
Q Consensus 96 t~~el~~F~~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~ 175 (429)
T Consensus 81 t~~el~~f~~~L~~~~~lp~~v~~~i~~~P~~~hPM~~L~t~vs~L~~~~~~~~~~~~~~~~~~~a~rLiA~~p~i~A~~ 160 (400)
T cd06114 81 TAEQLQEFREEITRHTLVHEQMKRFFNGFPRDAHPMAILSAMVNALSAFYPDSLDVNDPEQRELAAIRLIAKVPTIAAMA 160 (400)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998568999999988513888785999999999988518655688999999999999998999999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99727985348886424688778764289841014796999998756350136787630155554420565424677675
Q gi|254780355|r 176 YKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAG 255 (429)
Q Consensus 176 yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~ag 255 (429)
T Consensus 161 ~r~~~g~~~~~p~~~ls~a~NfL~Ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe~NaSTFaarvvaSTlsD~ysai~aa 240 (400)
T cd06114 161 YRYSIGQPFIYPDNDLSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHEQNASTSTVRMVGSSGANLFASISAG 240 (400)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99875998667998636999999998288764579999999999999988862367623776655424788788999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 54210022203528999998621553512799999982147861430277435555403468999999988860877651
Q gi|254780355|r 256 VACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDP 335 (429)
Q Consensus 256 i~aL~GPlHGGAne~v~~ml~~I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~ 335 (429)
T Consensus 241 IgaLkGPLHGGAne~v~~ml~eIg~~~~~~~~i~~~~~~~~~~rimGfGHrVYk~~DPRa~~lk~~~~~l~~~~~~-~~~ 319 (400)
T cd06114 241 IAALWGPLHGGANEAVLEMLEEIGSVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEVLAELGK-DDP 319 (400)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCH
T ss_conf 9864788777689999999998578651999999998647986302678776888994389999999999988377-537
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 79999999999961153145798778447889999984999668589999999989999999997078983004562105
Q gi|254780355|r 336 IAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYT 415 (429)
Q Consensus 336 ~~~~a~~le~~a~~d~~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~ 415 (429)
T Consensus 320 ~~~ia~~ie~~a~~~~~~~~r~l~pNVDfysg~ly~~lGip~dlfT~iFaisR~~GW~AH~~Eq~~~~~nrliRP~~~Yv 399 (400)
T cd06114 320 LLEIAMELEEIALKDDYFIERKLYPNVDFYSGIILRALGIPTEMFTVLFALGRTPGWIAQWREMHEDPELKIGRPRQLYT 399 (400)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 99999999999850011367898777035899999981988676369999999999999999998589986548878057
Q ss_pred C
Q ss_conf 8
Q gi|254780355|r 416 G 416 (429)
Q Consensus 416 G 416 (429)
T Consensus 400 G 400 (400)
T cd06114 400 G 400 (400)
T ss_pred C
T ss_conf 9