HHsearch alignment for GI: 254780355 and conserved domain: cd06115

>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00  E-value=0  Score=1048.39  Aligned_cols=398  Identities=47%  Similarity=0.823  Sum_probs=379.3

Q ss_pred             CCCCCCCCEEECCCC----CCCEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf             077787510100115----5861898888786238787565433447778989931999975089899999998187999
Q gi|254780355|r   21 EGSLGSSVLDISFLH----KNGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELAN   96 (429)
Q Consensus        21 ~~~~~~~~~d~~~l~----~~G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt   96 (429)
T Consensus         2 ~~~~--~~~~~~~i~~~~~~~G~~~~dPGl~~v~~~eS~Is~iDg~~G~L~YRGy~I~dLa~~~~FeEvayLLl~G~LPt   79 (410)
T cd06115           2 HGTV--KATDFKKIKAGKDDKGLRLYDPGYLNTAVVRSKISYIDGDKGILRYRGYPIEELAEKSTFLEVAYLLIYGNLPT   79 (410)
T ss_pred             CCCE--EHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEECEEECCCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf             9823--05666653246678892765887687016777680062888489889922999845698999999997697959


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHHH
Q ss_conf             8999999998864068998999999851247652578999999987520685576-------787889888999999999
Q gi|254780355|r   97 VSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGV-------QDLEQCVNVSLRMIAKIS  169 (429)
Q Consensus        97 ~~el~~F~~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~-------~d~~~~~~~a~rLiA~~p  169 (429)
T Consensus        80 ~~el~~f~~~l~~~~~lp~~v~~~l~~~p~~~hPM~~L~~~vsal~~~~p~~~~~~~~~~~~~~~~~~~~~~irLiAk~p  159 (410)
T cd06115          80 KSQLSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEANPALAGQDIYKNKQVRDKQIVRILGKAP  159 (410)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999984579877788875389888957999999999860186545322223334667788899999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHH
Q ss_conf             99999999727985348886424688778764289841014796999998756350136787630155554420565424
Q gi|254780355|r  170 TIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPF  249 (429)
Q Consensus       170 ~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adly  249 (429)
T Consensus       160 ~i~A~~yr~~~g~~~~~P~~~ls~a~NfL~Ml~~~~~~~~~p~~~~~~ald~~LILhADHe~NaSTftarvvaST~sD~y  239 (410)
T cd06115         160 TIAAAAYRRRAGRPPNLPSQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHEMNCSTAAVRHLASSGVDVY  239 (410)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHEEHHCCCCCHH
T ss_conf             99999999965998888997636998999997078866689898999999999999873157741142112004788889


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             67767554210022203528999998621553512799999982147861430277435555403468999999988860
Q gi|254780355|r  250 ACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVT  329 (429)
Q Consensus       250 sai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~  329 (429)
T Consensus       240 saisaaIgaLkGPLHGGAne~v~~ml~ei~s~~~v~~~i~~~l~~~~--rimGfGHrVYk~~DPRa~ilk~~~~~l~~~~  317 (410)
T cd06115         240 TAVAGAVGALYGPLHGGANEAVLRMLAEIGTVENIPAFIEGVKNRKR--KLSGFGHRVYKNYDPRAKIIKKLADEVFEIV  317 (410)
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             99999998657887777889999999996472237999999871678--7677898768888827799999999999874


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             87765179999999999961153145798778447889999984999668589999999989999999997078983004
Q gi|254780355|r  330 GRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGR  409 (429)
Q Consensus       330 ~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~R  409 (429)
T Consensus       318 ~--~~~l~~ia~~ie~~~~~~~~~~~k~l~pNVDfysg~v~~~lGip~~~fT~iFa~sR~~GW~AH~~Eq~~~~~~rliR  395 (410)
T cd06115         318 G--KDPLIEIAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTDFFPVLFAIPRMAGYLAHWRESLDDPDTKIMR  395 (410)
T ss_pred             C--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
T ss_conf             9--86179999999999998763556799878236899999980989366689999999999999999998388985768


Q ss_pred             CCCCCCCCCCCCCCC
Q ss_conf             562105887687068
Q gi|254780355|r  410 PRQLYTGALKRDYVP  424 (429)
Q Consensus       410 P~~~Y~G~~~r~y~p  424 (429)
T Consensus       396 P~~~YvG~~~r~y~P  410 (410)
T cd06115         396 PQQLYTGVWLRHYVP  410 (410)
T ss_pred             CCCEEECCCCCCCCC
T ss_conf             986003899988898