HHsearch alignment for GI: 254780355 and conserved domain: cd06115
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=0 Score=1048.39 Aligned_cols=398 Identities=47% Similarity=0.823 Sum_probs=379.3
Q ss_pred CCCCCCCCEEECCCC----CCCEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 077787510100115----5861898888786238787565433447778989931999975089899999998187999
Q gi|254780355|r 21 EGSLGSSVLDISFLH----KNGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELAN 96 (429)
Q Consensus 21 ~~~~~~~~~d~~~l~----~~G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt 96 (429)
T Consensus 2 ~~~~--~~~~~~~i~~~~~~~G~~~~dPGl~~v~~~eS~Is~iDg~~G~L~YRGy~I~dLa~~~~FeEvayLLl~G~LPt 79 (410)
T cd06115 2 HGTV--KATDFKKIKAGKDDKGLRLYDPGYLNTAVVRSKISYIDGDKGILRYRGYPIEELAEKSTFLEVAYLLIYGNLPT 79 (410)
T ss_pred CCCE--EHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEECEEECCCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf 9823--05666653246678892765887687016777680062888489889922999845698999999997697959
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHHH
Q ss_conf 8999999998864068998999999851247652578999999987520685576-------787889888999999999
Q gi|254780355|r 97 VSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGV-------QDLEQCVNVSLRMIAKIS 169 (429)
Q Consensus 97 ~~el~~F~~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~-------~d~~~~~~~a~rLiA~~p 169 (429)
T Consensus 80 ~~el~~f~~~l~~~~~lp~~v~~~l~~~p~~~hPM~~L~~~vsal~~~~p~~~~~~~~~~~~~~~~~~~~~~irLiAk~p 159 (410)
T cd06115 80 KSQLSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEANPALAGQDIYKNKQVRDKQIVRILGKAP 159 (410)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999984579877788875389888957999999999860186545322223334667788899999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHH
Q ss_conf 99999999727985348886424688778764289841014796999998756350136787630155554420565424
Q gi|254780355|r 170 TIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPF 249 (429)
Q Consensus 170 ~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adly 249 (429)
T Consensus 160 ~i~A~~yr~~~g~~~~~P~~~ls~a~NfL~Ml~~~~~~~~~p~~~~~~ald~~LILhADHe~NaSTftarvvaST~sD~y 239 (410)
T cd06115 160 TIAAAAYRRRAGRPPNLPSQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHEMNCSTAAVRHLASSGVDVY 239 (410)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHEEHHCCCCCHH
T ss_conf 99999999965998888997636998999997078866689898999999999999873157741142112004788889
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 67767554210022203528999998621553512799999982147861430277435555403468999999988860
Q gi|254780355|r 250 ACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVT 329 (429)
Q Consensus 250 sai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~ 329 (429)
T Consensus 240 saisaaIgaLkGPLHGGAne~v~~ml~ei~s~~~v~~~i~~~l~~~~--rimGfGHrVYk~~DPRa~ilk~~~~~l~~~~ 317 (410)
T cd06115 240 TAVAGAVGALYGPLHGGANEAVLRMLAEIGTVENIPAFIEGVKNRKR--KLSGFGHRVYKNYDPRAKIIKKLADEVFEIV 317 (410)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999998657887777889999999996472237999999871678--7677898768888827799999999999874
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 87765179999999999961153145798778447889999984999668589999999989999999997078983004
Q gi|254780355|r 330 GRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGR 409 (429)
Q Consensus 330 ~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~R 409 (429)
T Consensus 318 ~--~~~l~~ia~~ie~~~~~~~~~~~k~l~pNVDfysg~v~~~lGip~~~fT~iFa~sR~~GW~AH~~Eq~~~~~~rliR 395 (410)
T cd06115 318 G--KDPLIEIAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTDFFPVLFAIPRMAGYLAHWRESLDDPDTKIMR 395 (410)
T ss_pred C--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
T ss_conf 9--86179999999999998763556799878236899999980989366689999999999999999998388985768
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 562105887687068
Q gi|254780355|r 410 PRQLYTGALKRDYVP 424 (429)
Q Consensus 410 P~~~Y~G~~~r~y~p 424 (429)
T Consensus 396 P~~~YvG~~~r~y~P 410 (410)
T cd06115 396 PQQLYTGVWLRHYVP 410 (410)
T ss_pred CCCEEECCCCCCCCC
T ss_conf 986003899988898