HHsearch alignment for GI: 254780355 and conserved domain: cd06118
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=0 Score=876.48 Aligned_cols=358 Identities=46% Similarity=0.743 Sum_probs=344.8
Q ss_pred CCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 88786238787565433447778989931999975089899999998187999899999999886406899899999985
Q gi|254780355|r 44 PAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMG 123 (429)
Q Consensus 44 pG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~~ 123 (429)
T Consensus 1 pGl~gv~~~~t~is~id~~~G~L~YRG~~i~dLa~~~~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~lp~~v~~~l~~ 80 (358)
T cd06118 1 PGLEGVKAKETSISYIDGDEGILRYRGYDIEELAEKSSFEEVAYLLLYGKLPTKEELAEFKKKLASHRALPEHVVEILDL 80 (358)
T ss_pred CCCCCCCEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99898733467570686898879888904999860599999999997898979999999999999844675999999996
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 12476525789999999875206855767878898889999999999999999972798534888642468877876428
Q gi|254780355|r 124 FPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFS 203 (429)
Q Consensus 124 ~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~ 203 (429)
T Consensus 81 ~p~~~~pm~~l~~~v~~l~~~~~~~~~-~~~~~~~~~a~~lia~~p~i~a~~~~~~~g~~~~~p~~~~~~a~nfl~ml~g 159 (358)
T cd06118 81 LPKNAHPMDVLRTAVSALGSFDPFARD-KSPEARYEKAIRLIAKLPTIAANIYRNREGLEIIAPDPDLSYAENFLYMLFG 159 (358)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 257865488999999998732865446-9989999999998625889999999995699887889415399999997538
Q ss_pred CCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCH
Q ss_conf 98410147969999987563501367876301555544205654246776755421002220352899999862155351
Q gi|254780355|r 204 VPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLER 283 (429)
Q Consensus 204 ~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~ 283 (429)
T Consensus 160 ~-----~~~~~~~~~l~~~LiL~ADHe~NaSTfa~RvvaSt~ad~ysav~agl~aL~GPlHGgAn~~v~~~l~~i~~~~~ 234 (358)
T cd06118 160 E-----EPDPEEAKAMDLALILHADHEGNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANEAVLKMLLEIGTPEN 234 (358)
T ss_pred C-----CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHH
T ss_conf 9-----99999999999989786257887059999999823678899999999981686541578999999999688565
Q ss_pred HHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 27999999821478614302774355554034689999999888608776517999999999996115314579877844
Q gi|254780355|r 284 IPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVD 363 (429)
Q Consensus 284 v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNvD 363 (429)
T Consensus 235 ~~~~i~~~l~~~~--~i~GFGHrvYk~~DPRa~~l~~~~~~l~~~~~--~~~~~~~~~~ie~~~~~~--~~~r~l~pNvD 308 (358)
T cd06118 235 VEAYIWKKLANKR--RIMGFGHRVYKTYDPRAKILKELAEELAEEKG--DDKLFEIAEELEEIALEV--LGEKGIYPNVD 308 (358)
T ss_pred HHHHHHHHHCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHH--HCCCCCCCCHH
T ss_conf 8999999740467--77787876578899558999999999875038--876999999999999986--47689987739
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 788999998499966858999999998999999999707898300456210
Q gi|254780355|r 364 FYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLY 414 (429)
Q Consensus 364 fysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y 414 (429)
T Consensus 309 fy~~~l~~~lgip~~~~t~lFa~aR~~Gw~AH~~Eq~~~~-~kiiRP~~~Y 358 (358)
T cd06118 309 FYSGVVYKALGFPTELFTPLFAVSRAVGWLAHIIEYRENN-QRLIRPRAEY 358 (358)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCC
T ss_conf 8999999993979566789999999999999999999679-9844888879