RPSBLAST alignment of GI: 254780355 and protein with PDBid: 1vgm

>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378
 Score =  299 bits (766), Expect = 8e-82
 Identities = 130/388 (33%), Positives = 195/388 (50%), Gaps = 13/388 (3%)

Query: 41  TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQ 100
                  +     + +T+IDG NGIL YRGY I  L   + + E+ +L+L+GEL N  Q 
Sbjct: 4   EVSRGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYASYEELIHLMLYGELPNRQQL 63

Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160
                 I+    + E +       P +   + M+ +A G L+S Y         ++    
Sbjct: 64  NQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNRATNKELAV- 122

Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220
             ++IAK +TI A IY+   G     P     YA +FL   F     + ++     +AM+
Sbjct: 123 --QIIAKTATITANIYRAKEGLKPKIPEPSESYAESFLAATFGKKPTQEEI-----KAMD 175

Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280
              IL+ DHE  AST+   +A S+ +D ++CI A +A L G  HGGA EEA    +EIGS
Sbjct: 176 ASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQFVEIGS 235

Query: 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVA 340
           +E    +      K    R+MGFGHRVY+ +DPR +I +       E          ++A
Sbjct: 236 VENADKWFEEKIIKGKS-RLMGFGHRVYKTYDPRAKIFKTLAKSFAE-KNENVKKYYEIA 293

Query: 341 IELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMI 400
             +E++    + F  + +YPN DFYSGI   ALGFP  +FT LFA++R  GW++   E +
Sbjct: 294 ERIEKLG--VDTFGSKHIYPNTDFYSGIVFYALGFPIYMFTSLFALSRVLGWLAHIIEYV 351

Query: 401 VDPSRRIGRPRQLYTGALKRDYVPLEER 428
            +   R+ RPR LY G  KR++ P+E R
Sbjct: 352 EEQH-RLIRPRALYIGPEKREFKPIELR 378