RPSBLAST alignment of GI: 254780355 and protein with PDBid: 1vgp

 Score =  343 bits (880), Expect = 6e-95
 Identities = 136/387 (35%), Positives = 203/387 (52%), Gaps = 16/387 (4%)

Query: 42  YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQK 101
                      +++IT+IDG  G L YRGY I  L+E S+F EV YL+L+G+L N  +  
Sbjct: 3   IKKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEFSNFEEVSYLILYGKLPNREELN 62

Query: 102 DFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVS 161
            F +K+     L + + +F       A PM +L +AV  L           D++      
Sbjct: 63  WFQEKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLLGIEDSKNDERTDIKGI---- 118

Query: 162 LRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNR 221
            ++I+K  TI A   +   G   + P   L ++ NFL+M +     E +      +AM+ 
Sbjct: 119 -KLISKFPTIVANYARLRKGLDIIEPDPKLSHSENFLYMLYGDRPNEIKS-----KAMDV 172

Query: 222 IFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSL 281
             ILH DHE NAST    +  S+ +D ++ I AG++ L G  HGGAN EAL M  EIGS 
Sbjct: 173 TLILHIDHEMNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKMFKEIGSP 232

Query: 282 ERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAI 341
           E++  YI+         RIMGFGHRVY+ +DPR RI+++    + E  G     + Q+A 
Sbjct: 233 EKVNDYILNRLSNKQ--RIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAE 290

Query: 342 ELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIV 401
           ++E I +  +Y   + +YPNVDF+S I   +LGF  + F  +FA AR  GWV+   E I 
Sbjct: 291 KVEEIGI--KYLGPKGIYPNVDFFSSIVFYSLGFEPDFFPAVFASARVVGWVAHIMEYIK 348

Query: 402 DPSRRIGRPRQLYTGALKRDYVPLEER 428
           D   +I RP+  Y G + + Y+P++ R
Sbjct: 349 DN--KIIRPKAYYKGEIGKKYIPIDSR 373