RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str. psy62] (429 letters) >3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 Score = 491 bits (1266), Expect = e-139 Identities = 213/424 (50%), Positives = 295/424 (69%), Gaps = 6/424 (1%) Query: 1 MTDKFAKLHLGHE--EIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITF 58 + K+A L + EI+LP+ SLG+ +D+S L K+GIFTYDP F STA+C+SKIT+ Sbjct: 8 LMSKYATLKYADKNIEIELPVYSPSLGNDCIDVSSLVKHGIFTYDPGFMSTAACESKITY 67 Query: 59 IDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMS 118 IDG G+LL+RGYPIE+ ++KS++ +CY L++GEL Q K F +I + E++ Sbjct: 68 IDGGKGVLLHRGYPIEEWTQKSNYRTLCYALIYGELPTDEQVKSFRQEIINKMPVCEHVK 127 Query: 119 RFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKY 178 P HPM+ L++ V L++ + E V+ ++AKI+TIAAM Y++ Sbjct: 128 AAIAAMPQHTHPMSSLIAGVNVLAAEHIHNG---QKESQDEVAKNIVAKIATIAAMAYRH 184 Query: 179 SIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTV 238 + G+ F+ P+ + YA NFL+M F+ Y+ + L +AM+ IF+LHADHEQNASTSTV Sbjct: 185 NHGKKFLEPKMEYGYAENFLYMMFA-DDESYKPDELHIKAMDTIFMLHADHEQNASTSTV 243 Query: 239 RLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPF 298 RL+GS+G P+A I AG+ L G AHGGANE L ML EIGS E I YI +AKDK+DPF Sbjct: 244 RLSGSTGNSPYAAIIAGITALWGPAHGGANEAVLKMLSEIGSTENIDKYIAKAKDKDDPF 303 Query: 299 RIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKL 358 R+MGFGHRVY+N DPR M++ E+L G ++P+ VA +LE IAL+DE+FIERKL Sbjct: 304 RLMGFGHRVYKNTDPRATAMKKNCEEILAKLGHSDNPLLTVAKKLEEIALQDEFFIERKL 363 Query: 359 YPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGAL 418 + NVDFYSGI L+A+G P ++FT +FA+ART+GW+SQW EM+ DP+++IGRPRQLYTGA Sbjct: 364 FSNVDFYSGIILKAMGIPEDMFTAIFALARTSGWISQWIEMVNDPAQKIGRPRQLYTGAT 423 Query: 419 KRDY 422 R++ Sbjct: 424 NRNF 427 >1k3p_A Type II citrate synthase; lyase; 2.20A {Escherichia coli} SCOP: a.103.1.1 PDB: 1owb_A* 1owc_A 1nxe_A 1nxg_A* Length = 426 Score = 488 bits (1258), Expect = e-139 Identities = 247/427 (57%), Positives = 320/427 (74%), Gaps = 3/427 (0%) Query: 3 DKFAKLHL-GHEEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFIDG 61 D AKL L G ++L + +G+LG V+DI L G+FT+DP F+STASC+SKITFIDG Sbjct: 2 DTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDG 61 Query: 62 NNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFF 121 + GILL+RG+PI+QL+ S++LEVCY+LL+GE Q +F ++RH +++E ++R F Sbjct: 62 DEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLF 121 Query: 122 MGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIG 181 F +HPMA++ GAL++FY+ V + + R+++K+ T+AAM YKYSIG Sbjct: 122 HAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIG 181 Query: 182 QPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLA 241 QPFVYPR+DL YA NFL+M FS PC Y+VNP+L RAM+RI ILHADHEQNASTSTVR A Sbjct: 182 QPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTA 241 Query: 242 GSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIM 301 GSSGA+PFACIAAG+A L G AHGGANE AL ML EI S++ IP + RAKDKND FR+M Sbjct: 242 GSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFRLM 301 Query: 302 GFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPN 361 GFGHRVY+N+DPR +MRET +EVL+ G D + +VA+ELE IAL D YFIE+KLYPN Sbjct: 302 GFGHRVYKNYDPRATVMRETCHEVLKELGT-KDDLLEVAMELENIALNDPYFIEKKLYPN 360 Query: 362 VDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRD 421 VDFYSGI L+A+G P+++FTV+FA+ART GW++ W+EM D +I RPRQLYTG KRD Sbjct: 361 VDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGM-KIARPRQLYTGYEKRD 419 Query: 422 YVPLEER 428 + +R Sbjct: 420 FKSDIKR 426 >2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 Score = 454 bits (1169), Expect = e-128 Identities = 246/424 (58%), Positives = 314/424 (74%), Gaps = 1/424 (0%) Query: 6 AKLHLGHEEIDLPIKEGSLGSSVLDISFLHKN-GIFTYDPAFSSTASCKSKITFIDGNNG 64 A + + + ++P+ G+LG V+DI L G+FT+DP + TA+C SKITFIDG+ G Sbjct: 13 ATISVDGKSAEMPVLSGTLGPDVIDIRKLPAQLGVFTFDPGYGETAACNSKITFIDGDKG 72 Query: 65 ILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGF 124 +LL+RGYPI QL+E + + EV YLLL+GEL N +Q F + ++ H LL+E + FF GF Sbjct: 73 VLLHRGYPIAQLAENASYEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGF 132 Query: 125 PSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPF 184 AHPMA+L VGALS+FY + + ++R+IAKI TIAA YKY+ G+ F Sbjct: 133 RRDAHPMAILCGTVGALSAFYPDANDIAIPANRDLAAMRLIAKIPTIAAWAYKYTQGEAF 192 Query: 185 VYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSS 244 +YPR+DL+YA NFL M F+ Y+VNP+LARAMNRI ILHADHEQNASTSTVRLAGS+ Sbjct: 193 IYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQNASTSTVRLAGST 252 Query: 245 GADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFG 304 GA+PFACIAAG+A L G AHGGANE L ML IG E IP +I + KDKN ++MGFG Sbjct: 253 GANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDKNSGVKLMGFG 312 Query: 305 HRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDF 364 HRVY+N DPR +IM++T +EVL G +DP+ +A+ELE+IAL D+YF++RKLYPNVDF Sbjct: 313 HRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEKIALSDDYFVQRKLYPNVDF 372 Query: 365 YSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVP 424 YSGI L+A+G PT++FTVLFAVART GWVSQW EMI +P +RI RPRQLY GA +RDYVP Sbjct: 373 YSGIILKAMGIPTSMFTVLFAVARTTGWVSQWKEMIEEPGQRISRPRQLYIGAPQRDYVP 432 Query: 425 LEER 428 L +R Sbjct: 433 LAKR 436 >1iom_A Citrate synthase; open form, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus HB8} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 Score = 390 bits (1002), Expect = e-109 Identities = 144/378 (38%), Positives = 198/378 (52%), Gaps = 13/378 (3%) Query: 52 CKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHA 111 +S++ +IDG G L Y G PI++L+EKS F E +LLLHG L + ++F+ ++R Sbjct: 13 TESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRR 72 Query: 112 LLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTI 171 L ++ F +P SAHPM+ L +AV + G E L +IAK +TI Sbjct: 73 ALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTE-GDISREALYEKGLDLIAKFATI 131 Query: 172 AAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQ 231 A + G+ + PR DL +A+NFL+M + +P AR M+ ILHA+H Sbjct: 132 VAANKRLKEGKEPIPPREDLSHAANFLYMAN-----GVEPSPEQARLMDAALILHAEHGF 186 Query: 232 NASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRA 291 NAST T A S+ D ++ I A VA L G HGGANE + M+ EIG+ ER ++ Sbjct: 187 NASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREWVREK 246 Query: 292 KDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDE 351 K + RIMG GHRVY+ DPR ++ + V E G + +E E + Sbjct: 247 LAKKE--RIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEE----AGK 300 Query: 352 YFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPR 411 R +YPNVDFYSG+ LGF FT +FAVAR +GWV E + R+ RP Sbjct: 301 VLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQ-ELDNRLLRPG 359 Query: 412 QLYTGALKRDYVPLEERE 429 Y G L YVPLE RE Sbjct: 360 AKYVGELDVPYVPLEARE 377 >1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 Score = 385 bits (989), Expect = e-107 Identities = 124/388 (31%), Positives = 198/388 (51%), Gaps = 13/388 (3%) Query: 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQ 100 + + +TFIDG GIL YRGY IE L + E YL+L+G+L + Sbjct: 3 VVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKEL 62 Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160 D K++ + + + P A + +L AL+S + + E Sbjct: 63 NDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALASIDKNF---KWKENDKEK 119 Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220 ++ +IAK++T+ A +Y+ G P +A +FL F+ ++ AM+ Sbjct: 120 AISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSFLLASFAREPTTDEI-----NAMD 174 Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 + IL+ DHE AST+ +A S+ +D ++ + A +A L G HGGA EEA +EIG Sbjct: 175 KALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIGD 234 Query: 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVA 340 R+ ++ K N R+MGFGHRVY+ +DPR +I ++ ++E ++A Sbjct: 235 PNRVQNWFND-KVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADAR-RYFEIA 292 Query: 341 IELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMI 400 +LE + + F + +YPN DFYSGI ALGFP +FT LFA++RT GW++ E + Sbjct: 293 QKLEELG--IKQFSSKGIYPNTDFYSGIVFYALGFPVYMFTALFALSRTLGWLAHIIEYV 350 Query: 401 VDPSRRIGRPRQLYTGALKRDYVPLEER 428 + R+ RPR LY G ++YV +++R Sbjct: 351 EEQH-RLIRPRALYVGPEYQEYVSIDKR 377 >3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 Score = 383 bits (984), Expect = e-107 Identities = 104/369 (28%), Positives = 167/369 (45%), Gaps = 19/369 (5%) Query: 54 SKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALL 113 + I+ + L YRGYP++ L+ + F +V +LL GEL ++ F+ + + Sbjct: 61 TAISKVVPQTNSLTYRGYPVQDLAARCSFEQVAFLLWRGELPTDAELALFSQRERASRRV 120 Query: 114 NENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAA 173 + +M P + HPM ++ +A+ L + D ++RM+A + TI A Sbjct: 121 DRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDE---DDAAANRAKAMRMMAVLPTIVA 177 Query: 174 MIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNA 233 + + G P + P S L YA NFLHMCF + A + IL+A+H NA Sbjct: 178 IDMRRRRGLPPIAPHSGLGYAQNFLHMCFGEVP-----ETAVVSAFEQSMILYAEHGFNA 232 Query: 234 STSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKD 293 ST R+ S+ +D ++ + + L GR HGGANE ++ ++EIG ++ Sbjct: 233 STFAARVVTSTQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEIGDPANAREWLRAKLA 292 Query: 294 KNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYF 353 + + +IMGFGHRVYR+ D R M+ + V V + L E Sbjct: 293 RKE--KIMGFGHRVYRHGDSRVPTMKRALERVGTVRD--GQRWLDIY-----QVLAAEMA 343 Query: 354 IERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQL 413 + PN+DF +G +GF FT +F ++R GW + E + RP Sbjct: 344 SATGILPNLDFPTGPAYYLMGFDIASFTPIFVMSRITGWTAHIMEQATAN--ALIRPLSA 401 Query: 414 YTGALKRDY 422 Y G +R Sbjct: 402 YCGHEQRVL 410 >2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, catenane, transferase; 1.60A {Pyrobaculum aerophilum str} Length = 409 Score = 349 bits (896), Expect = 7e-97 Identities = 133/388 (34%), Positives = 205/388 (52%), Gaps = 21/388 (5%) Query: 52 CKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHA 111 + I+ IDG GIL YRGY IE+L+ S + EV YL+L+G L + +D+ +++ ++ Sbjct: 32 KSTSISDIDGEKGILWYRGYRIEELARLSTYEEVSYLILYGRLPTKRELEDYINRMKKYR 91 Query: 112 LLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFY-----------YSPSGVQDLEQCVNV 160 L+ + A+ +AV A ++ ++ E + Sbjct: 92 ELHPATVEVIRNLAKAHPMFALE-AAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRI 150 Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220 + +++AK+ TI A Y++S G V PR DL +A+NFL+M F + +PL +R ++ Sbjct: 151 AEKLVAKMPTIVAYHYRFSRGLEVVRPRDDLGHAANFLYMMFG-----REPDPLASRGID 205 Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 ILHADHE AST + S+ +D ++ +AA +A L G HGGANE A+ +EIG+ Sbjct: 206 LYLILHADHEVPASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGGANEMAVRNYLEIGT 265 Query: 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVA 340 + I+ A K ++MG GHRVY+ +DPR +I +E + + +A Sbjct: 266 PAKAKE-IVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSRDY-VAKFGDPQNLFAIA 323 Query: 341 IELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMI 400 +E+ L YF +RKLYPNVDF+SGI +G P FT +FA++R GWV+ E Sbjct: 324 SAIEQEVLSHPYFQQRKLYPNVDFWSGIAFYYMGIPYEYFTPIFAMSRVVGWVAHVLEYW 383 Query: 401 VDPSRRIGRPRQLYTGALKRDYVPLEER 428 + RI RPR Y G Y+PLE+R Sbjct: 384 ENN--RIFRPRACYIGPHDLQYIPLEQR 409 >1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Length = 373 Score = 343 bits (880), Expect = 6e-95 Identities = 136/387 (35%), Positives = 203/387 (52%), Gaps = 16/387 (4%) Query: 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQK 101 +++IT+IDG G L YRGY I L+E S+F EV YL+L+G+L N + Sbjct: 3 IKKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEFSNFEEVSYLILYGKLPNREELN 62 Query: 102 DFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVS 161 F +K+ L + + +F A PM +L +AV L D++ Sbjct: 63 WFQEKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLLGIEDSKNDERTDIKGI---- 118 Query: 162 LRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNR 221 ++I+K TI A + G + P L ++ NFL+M + E + +AM+ Sbjct: 119 -KLISKFPTIVANYARLRKGLDIIEPDPKLSHSENFLYMLYGDRPNEIKS-----KAMDV 172 Query: 222 IFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSL 281 ILH DHE NAST + S+ +D ++ I AG++ L G HGGAN EAL M EIGS Sbjct: 173 TLILHIDHEMNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKMFKEIGSP 232 Query: 282 ERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAI 341 E++ YI+ RIMGFGHRVY+ +DPR RI+++ + E G + Q+A Sbjct: 233 EKVNDYILNRLSNKQ--RIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAE 290 Query: 342 ELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIV 401 ++E I + +Y + +YPNVDF+S I +LGF + F +FA AR GWV+ E I Sbjct: 291 KVEEIGI--KYLGPKGIYPNVDFFSSIVFYSLGFEPDFFPAVFASARVVGWVAHIMEYIK 348 Query: 402 DPSRRIGRPRQLYTGALKRDYVPLEER 428 D +I RP+ Y G + + Y+P++ R Sbjct: 349 DN--KIIRPKAYYKGEIGKKYIPIDSR 373 >1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Length = 371 Score = 312 bits (800), Expect = 9e-86 Identities = 127/380 (33%), Positives = 202/380 (53%), Gaps = 17/380 (4%) Query: 49 TASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKIS 108 ++ I +IDG G L YRGY +E+L+E S F EV YLL G+L ++S+ ++F +++ Sbjct: 8 VYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELA 67 Query: 109 RHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKI 168 + L + + P + HPM L + + L + S E+ + + + AKI Sbjct: 68 KSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKI 127 Query: 169 STIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHAD 228 TI A Y+ G +V P+ L +A+NFL+M + +AM+ IL+A+ Sbjct: 128 PTIVANWYRIKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWE-----KAMDVALILYAE 182 Query: 229 HEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYI 288 HE NAST V GS+ +D ++ I AG+ L G HGGA EEA+ MEIGS E++ + Sbjct: 183 HEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEEWF 242 Query: 289 MRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIAL 348 +A + MG GHRVY+ +DPR RI ++ + + + ++A LER+ Sbjct: 243 FKALQQKRKI--MGAGHRVYKTYDPRARIFKKYASK------LGDKKLFEIAERLERLV- 293 Query: 349 EDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIG 408 +EY ++ + NVD++SG+ + P L+T +FA+ R AGW + E + RI Sbjct: 294 -EEYLSKKGISINVDYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLAEYVSHN--RII 350 Query: 409 RPRQLYTGALKRDYVPLEER 428 RPR Y G + + Y+P+E R Sbjct: 351 RPRLQYVGEIGKKYLPIELR 370 >2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 Score = 301 bits (771), Expect = 2e-82 Identities = 117/378 (30%), Positives = 191/378 (50%), Gaps = 25/378 (6%) Query: 52 CKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHA 111 C+S I ++DG NG L YRG P+E+L+EKS F E Y L +G+L S+ ++F K++ + Sbjct: 12 CESSICYLDGINGRLYYRGIPVEELAEKSTFEETAYFLWYGKLPTKSELEEFKRKMADYR 71 Query: 112 LLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTI 171 L P + H + +L + S + +++ + + TI Sbjct: 72 ELPAEALGILYHLPKNLHYIDVLKIFLSIHGSMDGNDEDLREKAIR------VASVFPTI 125 Query: 172 AAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQ 231 A Y+YS G+ + PR DL + NF +M F + + + FIL + + Sbjct: 126 LAYYYRYSKGKELIRPRKDLSHVENFYYMMFGERNEKIR-------LLESAFILLMEQDI 178 Query: 232 NASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRA 291 NAST + S+ +D ++CI + L G HGGA+E+ ML EIGS +R+ ++ + Sbjct: 179 NASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEIGSEDRVEEFVQKC 238 Query: 292 KDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDE 351 + MGFGHRVY+ +DPR ++ + E + + ++A +LE + ++ Sbjct: 239 LKEKRKI--MGFGHRVYKTYDPRAVFLKRVLQEHFP-----DSKLFRIASKLEEYIVSNK 291 Query: 352 YFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPR 411 + +YPNVD YS + LGFP N+FT LFA AR GW + E + D ++ RP Sbjct: 292 I---KNIYPNVDLYSSVLFEELGFPRNMFTALFATARVVGWTAHVIEYVSDN--KLIRPT 346 Query: 412 QLYTGALKRDYVPLEERE 429 Y G + +Y+P+E R+ Sbjct: 347 SEYVGPMDVEYIPIERRD 364 >1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 Score = 300 bits (770), Expect = 3e-82 Identities = 104/415 (25%), Positives = 176/415 (42%), Gaps = 44/415 (10%) Query: 38 GIFTYDPAFS---STASCKSKITFIDGNNGILLYRGYPIEQL---------SEKSDFLEV 85 G T D ++ + + +D + GI +RG+ I + E+ + Sbjct: 32 GQITVDMSYGGMRGMKGLIYETSVLDPDEGIR-FRGFSIPECQKLLPKAGGGEEPLPEGL 90 Query: 86 CYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFY 145 +LL+ G++ Q + + ++ A L ++ FP++ HPM+ L +A+ AL+S Sbjct: 91 FWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSES 150 Query: 146 YSPSGVQD-------LEQCVNVSLRMIAKISTIAAMIYKYSI--GQPFVYPRSDLDYASN 196 + E ++ +IAK+ +AA IY+ G S LD++ N Sbjct: 151 NFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHN 210 Query: 197 FLHMCFSVPCAEYQVNPLLARAMNRIFILHADHE-QNASTSTVRLAGSSGADPFACIAAG 255 F +M M +H+DHE N S T L GS+ +DP+ AA Sbjct: 211 FTNMLGYTDPQF-------TELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAA 263 Query: 256 VACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKD-----KNDPFRIMGFGHRVYRN 310 + L G HG AN+E L L ++ + +D N + G+GH V R Sbjct: 264 MNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRK 323 Query: 311 HDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIA--LEDEYFIERKLYPNVDFYSGI 368 DPR RE + L +DP+ ++ +L +I + E + +PNVD +SG+ Sbjct: 324 TDPRYTCQREFALKHL-----PSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGV 378 Query: 369 TLRALGFP-TNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDY 422 L+ G N +TVLF V+R G ++Q + RP+ + T L++ Sbjct: 379 LLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRAL-GFPLERPKSMSTAGLEKLS 432 >2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 Score = 299 bits (766), Expect = 8e-82 Identities = 114/391 (29%), Positives = 196/391 (50%), Gaps = 15/391 (3%) Query: 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQ-LSEKSDFLEVCYLLLHGELANVSQQ 100 +++T IDGN GIL Y GY +E ++ + E+ YL L+G L + Sbjct: 7 ISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQEL 66 Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160 + + + + + + + + P + +AM ++AV A+++ +D ++ V Sbjct: 67 RKYKETVQKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAASETKFKWNKDTDRDVAA 126 Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220 MI ++S I +Y++ + P P+ YA +FL+ F + ++ AMN Sbjct: 127 --EMIGRMSAITVNVYRHIMNMPAELPKPSDSYAESFLNAAFGRKATKEEI-----DAMN 179 Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 IL+ DHE AST+ +A S+ +D ++ I A +A L G HGGA E A+ EI Sbjct: 180 TALILYTDHEVPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFDEIKD 239 Query: 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVA 340 + + N R+MGFGHRVY+ +DPR +I + ++ + ++A Sbjct: 240 PAMVEKWFND-NIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSS-KKPEVHKVYEIA 297 Query: 341 IELERIALEDEYFIERKLYPNVDFYSGITLRALGFP--TNLFTVLFAVARTAGWVSQWTE 398 +LE + F + +YPN D++SGI ++GFP N++T LFA++R GW + + E Sbjct: 298 TKLEDFG--IKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHFIE 355 Query: 399 MIVDPSRRIGRPRQLYTGALKRDYVPLEERE 429 + + R+ RPR +Y G +R YVP+ ER+ Sbjct: 356 YVEEQQ-RLIRPRAVYVGPAERKYVPIAERK 385 >1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 Score = 299 bits (766), Expect = 8e-82 Identities = 130/388 (33%), Positives = 195/388 (50%), Gaps = 13/388 (3%) Query: 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQ 100 + + +T+IDG NGIL YRGY I L + + E+ +L+L+GEL N Q Sbjct: 4 EVSRGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYASYEELIHLMLYGELPNRQQL 63 Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160 I+ + E + P + + M+ +A G L+S Y ++ Sbjct: 64 NQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNRATNKELAV- 122 Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220 ++IAK +TI A IY+ G P YA +FL F + ++ +AM+ Sbjct: 123 --QIIAKTATITANIYRAKEGLKPKIPEPSESYAESFLAATFGKKPTQEEI-----KAMD 175 Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 IL+ DHE AST+ +A S+ +D ++CI A +A L G HGGA EEA +EIGS Sbjct: 176 ASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQFVEIGS 235 Query: 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVA 340 +E + K R+MGFGHRVY+ +DPR +I + E ++A Sbjct: 236 VENADKWFEEKIIKGKS-RLMGFGHRVYKTYDPRAKIFKTLAKSFAE-KNENVKKYYEIA 293 Query: 341 IELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMI 400 +E++ + F + +YPN DFYSGI ALGFP +FT LFA++R GW++ E + Sbjct: 294 ERIEKLG--VDTFGSKHIYPNTDFYSGIVFYALGFPIYMFTSLFALSRVLGWLAHIIEYV 351 Query: 401 VDPSRRIGRPRQLYTGALKRDYVPLEER 428 + R+ RPR LY G KR++ P+E R Sbjct: 352 EEQH-RLIRPRALYIGPEKREFKPIELR 378 >1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Length = 378 Score = 291 bits (744), Expect = 3e-79 Identities = 111/389 (28%), Positives = 179/389 (46%), Gaps = 22/389 (5%) Query: 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQ 100 T + + + I+ ++ + LLYRGYP+++L+ K F +V YLL + EL N S+ Sbjct: 4 TIHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSEL 63 Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160 K F + H L+EN+ ++ HPM + +AV ++ + E + Sbjct: 64 KAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSV-LGANHARAQDSSPEANLEK 122 Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220 ++ ++A ++ A + G+ + PR DLDY++NFL M F P + A N Sbjct: 123 AMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLWMTFGEEA-----APEVVEAFN 177 Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 IL+A+H NAST T R+ S+ AD + + + L G HGGANE ++ EIG Sbjct: 178 VSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGI 237 Query: 281 LER-------IPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFN 333 + ++MGFGHRVY+N D R M+ + ++ Sbjct: 238 RKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMI--KHYDR 295 Query: 334 DPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWV 393 + + LE E +++ PN+D+ +G T +GF T +FT LF AR GW Sbjct: 296 PEMLGLYNGLEAAMEE-----AKQIKPNLDYPAGPTYNLMGFDTEMFTPLFIAARITGWT 350 Query: 394 SQWTEMIVDPSRRIGRPRQLYTGALKRDY 422 + E + D + RP Y G +R Sbjct: 351 AHIMEQVADN--ALIRPLSEYNGPEQRQV 377 >2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Score = 289 bits (741), Expect = 6e-79 Identities = 112/370 (30%), Positives = 180/370 (48%), Gaps = 18/370 (4%) Query: 52 CKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHA 111 ++ I+ IDG G L+YRG+ + ++ F E YL+L G+L + + + F DK++ Sbjct: 11 VETSISHIDGEKGRLIYRGHHAKDIALNHSFEEAAYLILFGKLPSTEELQVFKDKLAAER 70 Query: 112 LLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTI 171 L E++ R P++ M++L + V AL Y+ ++R+IA +I Sbjct: 71 NLPEHIERLIQSLPNNMDDMSVLRTVVSALGENTYTF------HPKTEEAIRLIAITPSI 124 Query: 172 AAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQ 231 A +++ G+ + P S + N+ +M +E + A+ IL +H Sbjct: 125 IAYRKRWTRGEQAIAPSSQYGHVENYYYMLTGEQPSEAKKK-----ALETYMILATEHGM 179 Query: 232 NASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRA 291 NAST + R+ S+ +D + + A + + G HGGA ML +IG E Y+ Sbjct: 180 NASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVTKMLEDIGEKEHAEAYLKEK 239 Query: 292 KDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDE 351 +K + R+MGFGHRVY+ DPR +R+ EV G D + +E E I L + Sbjct: 240 LEKGE--RLMGFGHRVYKTKDPRAEALRQKAEEVA---GNDRDLDLALHVEAEAIRLLEI 294 Query: 352 YFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPR 411 Y RKLY NV+FY+ +RA+ F LFT F+ +R GW + E + I RP Sbjct: 295 YKPGRKLYTNVEFYAAAVMRAIDFDDELFTPTFSASRMVGWCAHVLEQAENN--MIFRPS 352 Query: 412 QLYTGALKRD 421 YTGA+ + Sbjct: 353 AQYTGAIPEE 362 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.5 bits (92), Expect = 0.002 Identities = 67/440 (15%), Positives = 132/440 (30%), Gaps = 162/440 (36%) Query: 46 FSSTASCKSKITFIDGNNGI-------L--LYRGYP------IEQLSEK-----SDFLEV 85 F + +++ I G G L LY+ Y I+ +E L+ Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205 Query: 86 CYLLLHG-----ELANVSQQKDFND--------------------KISRHAL-LN--ENM 117 + G L N S D D ++ L E + Sbjct: 206 EKVFTQGLNILEWLENPSNTPD-KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE-L 263 Query: 118 SRFFMGFPSSAHP----MAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAA 173 + G ++ H A+ ++ + SF+ V ++ ++ Sbjct: 264 RSYLKG--ATGHSQGLVTAVAIAETDSWESFF----------VSVRKAITVL-------- 303 Query: 174 MIYKYSIG----QPFVYPRSDL------DYASNFLHMCFSVPCAEYQVNPLLA-RAMNRI 222 + IG + YP + L D S+ E +P+L+ + + Sbjct: 304 ----FFIGVRCYE--AYPNTSLPPSILED----------SLENNEGVPSPMLSISNLTQE 347 Query: 223 FIL-HADHEQNA---STSTVRLAGSSGADPFACIAAG-VACLGGRAHGGANEEALNMLME 277 + + + N+ + V ++ +GA + +G L +G LN+ Sbjct: 348 QVQDYVNK-TNSHLPAGKQVEISLVNGAKNL--VVSGPPQSL----YG------LNL--- 391 Query: 278 IGSLERIPHYIMRAKDKND----PF--RIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGR 331 +L + +A D PF R + F +R L V Sbjct: 392 --TLRKA-----KAPSGLDQSRIPFSERKLKFSNR------------------FLPVASP 426 Query: 332 FNDPIAQVAIE--LERIALEDEYFIERKL-YPNVDFYSGITLRALGFPTNLFTVLF-AVA 387 F+ + A + + + + F + + P D + G LR L ++ + + Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS--GSISERIVDCII 484 Query: 388 RTAGWVSQWTEMIVDPSRRI 407 R V +W + I Sbjct: 485 RLP--V-KWETTTQFKATHI 501 Score = 37.2 bits (86), Expect = 0.006 Identities = 56/385 (14%), Positives = 92/385 (23%), Gaps = 161/385 (41%) Query: 72 PIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPM 131 P+ LS S LE L+ SQ ++ +F P Sbjct: 8 PL-TLSHGS--LEHVLLVPTASFFIASQLQE----------------QFNKILPE----- 43 Query: 132 AMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDL 191 + D E P + Sbjct: 44 --------------PTEGFAADDE-------------------------------PTTPA 58 Query: 192 DYASNFL-HMCFSV---PCAEY-QVNPLLARAMNRIFILHAD-HEQNASTSTVRLAGSSG 245 + FL ++ V ++ QV L ++ D H +L + Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-----ALAAKLLQEND 113 Query: 246 ADPFAC---IAAGV-AC-LGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRI 300 I + A + R + AL RA + + ++ Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSAL----------------FRAVGEGN-AQL 156 Query: 301 M----GFGHRVYRNHDPRC-RIMRE--TMYEVLEVTGRFNDPIAQVAIELERIALEDEYF 353 + G G+ D +R+ Y VL V D I A L + Sbjct: 157 VAIFGGQGN----TDD--YFEELRDLYQTYHVL-VG----DLIKFSAETLSELIRTTLDA 205 Query: 354 IERKLY----------------PNVDFYSGITLRALGFPTNLFTVL----FAVA-RTAGW 392 K++ P+ D+ I + P L V+ + V + G Sbjct: 206 E--KVFTQGLNILEWLENPSNTPDKDYLLSI---PISCP--LIGVIQLAHYVVTAKLLG- 257 Query: 393 VSQWTEMIVDPSRRIGRPRQLYTGA 417 P G R GA Sbjct: 258 --------FTP----GELRSYLKGA 270 >2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8} Length = 496 Score = 26.9 bits (59), Expect = 8.1 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 18/126 (14%) Query: 174 MIYKYSIGQPFVYPRSDLDYASNFLHMCF----SVPCAEYQVNPLLARAMNRIFILHADH 229 ++ + + V + D S+ P A + A++ Sbjct: 230 LVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHG-------- 281 Query: 230 EQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIM 289 S + AG + +P A + + V L + N L+ R+ + Sbjct: 282 ------SAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDV 335 Query: 290 RAKDKN 295 D+ Sbjct: 336 VGYDRG 341 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.138 0.412 Gapped Lambda K H 0.267 0.0543 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,797,836 Number of extensions: 178607 Number of successful extensions: 473 Number of sequences better than 10.0: 1 Number of HSP's gapped: 407 Number of HSP's successfully gapped: 19 Length of query: 429 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 334 Effective length of database: 3,390,050 Effective search space: 1132276700 Effective search space used: 1132276700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.5 bits)