Query gi|254780356|ref|YP_003064769.1| hypothetical protein CLIBASIA_01205 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 120 No_of_seqs 107 out of 144 Neff 5.5 Searched_HMMs 39220 Date Sun May 29 15:43:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780356.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK11539 hypothetical protein; 93.9 0.4 1E-05 25.0 9.0 63 34-103 6-68 (754) 2 PRK10404 hypothetical protein; 75.9 5 0.00013 19.3 4.3 46 3-48 51-96 (101) 3 COG4575 ElaB Uncharacterized c 75.3 4.9 0.00012 19.4 4.1 47 2-48 53-99 (104) 4 pfam11833 DUF3353 Protein of u 64.2 11 0.00027 17.6 9.1 82 25-108 87-169 (193) 5 PRK10132 hypothetical protein; 50.6 19 0.00047 16.4 3.6 44 3-47 58-101 (108) 6 COG3851 UhpB Signal transducti 39.9 28 0.00071 15.5 7.4 56 27-82 178-233 (497) 7 pfam09925 DUF2157 Predicted me 39.9 28 0.00071 15.5 7.2 66 30-95 34-106 (144) 8 PRK13743 conjugal transfer pro 38.4 28 0.00072 15.4 2.6 91 2-102 12-110 (140) 9 pfam05957 DUF883 Bacterial pro 35.8 33 0.00083 15.1 4.5 45 3-47 44-88 (94) 10 pfam08105 Antimicrobial10 Metc 23.7 45 0.0012 14.4 1.6 29 83-111 6-38 (52) 11 COG5548 Small integral membran 21.7 60 0.0015 13.7 4.4 59 36-94 13-71 (105) No 1 >PRK11539 hypothetical protein; Provisional Probab=93.89 E-value=0.4 Score=24.96 Aligned_cols=63 Identities=10% Similarity=0.159 Sum_probs=39.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999996201457879999999999999999714743599999999999999999999999863 Q gi|254780356|r 34 IPVFLAFGAIFWFVYSPEIPIWGIVLSILIIAIISLRIRYSHPHILLIVKTLTYFLTRMILAAIEITRNP 103 (120) Q Consensus 34 ~PV~lg~GI~~YF~L~~EP~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~l~~~~~Gf~~A~~Rt~~va 103 (120) +-+++.+|+....-+|+.|+.|....++..++.+.+..++. .+. +++.++||..+.+.++..- T Consensus 6 ~a~a~~~G~l~l~~lp~lP~~~~~~~l~~~~~~l~~~~~~~---~~~----l~l~ll~f~wa~~~~~~~l 68 (754) T PRK11539 6 VAVCIICGILPLLILPQLPGTWILAFLLLLACLLAFIPVRY---CRY----LALTLLFFLWGILAANQIL 68 (754) T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHH T ss_conf 99999999999996013893589999999999999987658---999----9999999999999999999 No 2 >PRK10404 hypothetical protein; Provisional Probab=75.88 E-value=5 Score=19.31 Aligned_cols=46 Identities=9% Similarity=-0.028 Sum_probs=39.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 4564007999999999999989855982779999999999999620 Q gi|254780356|r 3 QKKISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFVY 48 (120) Q Consensus 3 ~~~~~~~~~~i~~~i~~~l~~E~~~G~lflW~PV~lg~GI~~YF~L 48 (120) |.|++.+..++..+.+.....--+|=|=-||--|..++|+|+...+ T Consensus 51 r~rl~~~~~~~~~~aK~aa~~aD~YVhdnPW~aVGiaA~vGlvlGl 96 (101) T PRK10404 51 KKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGL 96 (101) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 9999988999999999999989999984972999999999999999 No 3 >COG4575 ElaB Uncharacterized conserved protein [Function unknown] Probab=75.32 E-value=4.9 Score=19.38 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=40.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 14564007999999999999989855982779999999999999620 Q gi|254780356|r 2 LQKKISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFVY 48 (120) Q Consensus 2 ~~~~~~~~~~~i~~~i~~~l~~E~~~G~lflW~PV~lg~GI~~YF~L 48 (120) .|.|++..--++.++-++.+..--+|=|=-||--|..+++||+...+ T Consensus 53 ~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~VGvaAaVGlllGl 99 (104) T COG4575 53 ARDRLGDTGDAVVQRSKAAADATDDYVRENPWQGVGVAAAVGLLLGL 99 (104) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 99999761378999999999879999872883388999999999999 No 4 >pfam11833 DUF3353 Protein of unknown function (DUF3353). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. Probab=64.17 E-value=11 Score=17.64 Aligned_cols=82 Identities=15% Similarity=0.048 Sum_probs=51.2 Q ss_pred HHCCCCHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8559827799999-999999996201457879999999999999999714743599999999999999999999999863 Q gi|254780356|r 25 QEYGGFFLFIPVF-LAFGAIFWFVYSPEIPIWGIVLSILIIAIISLRIRYSHPHILLIVKTLTYFLTRMILAAIEITRNP 103 (120) Q Consensus 25 ~~~G~lflW~PV~-lg~GI~~YF~L~~EP~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~l~~~~~Gf~~A~~Rt~~va 103 (120) .-.+....|--+. .+.+...+|.-+.+. ..+.+.++..+...+..|+.+...+.+.+.+..+..|..+...=..... T Consensus 87 ~Ps~~~l~~~~~~f~~L~~~~l~~~~~~~--~~l~LAls~~~~iyfl~rk~~~~~rA~~~tl~~L~~G~~~Gs~l~~~l~ 164 (193) T pfam11833 87 LPSGQGLLIRLVLFGLLALLLLLQGAESG--PQLQLALSTGACIYFLNRKGRRFGRALLWSLGGLVVGLLLGSLLAVLLP 164 (193) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 89955018999999999999986068887--3189999999999988885031789999999999999999999987502 Q ss_pred CCCCC Q ss_conf 42207 Q gi|254780356|r 104 TTILS 108 (120) Q Consensus 104 apVL~ 108 (120) .+++. T Consensus 165 ~~~~~ 169 (193) T pfam11833 165 PFILP 169 (193) T ss_pred CCCCC T ss_conf 22467 No 5 >PRK10132 hypothetical protein; Provisional Probab=50.55 E-value=19 Score=16.38 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 456400799999999999998985598277999999999999962 Q gi|254780356|r 3 QKKISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFV 47 (120) Q Consensus 3 ~~~~~~~~~~i~~~i~~~l~~E~~~G~lflW~PV~lg~GI~~YF~ 47 (120) |.|+++ -..+.++-+.....--+|=|=-||.-|..|+++|+... T Consensus 58 R~rL~~-~~~v~~~ar~aa~~AD~YVrenPW~sVGigAAVGvvlG 101 (108) T PRK10132 58 RARMHG-RTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIG 101 (108) T ss_pred HHHHCC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 998745-46999999999986888886489504769999999999 No 6 >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Probab=39.95 E-value=28 Score=15.48 Aligned_cols=56 Identities=9% Similarity=0.220 Sum_probs=42.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 59827799999999999996201457879999999999999999714743599999 Q gi|254780356|r 27 YGGFFLFIPVFLAFGAIFWFVYSPEIPIWGIVLSILIIAIISLRIRYSHPHILLIV 82 (120) Q Consensus 27 ~G~lflW~PV~lg~GI~~YF~L~~EP~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~ 82 (120) |+....|.-.+|.+|+..-..+|+|-+...+..++.-....++...+.......+. T Consensus 178 r~k~lvw~~L~fiigll~ql~L~de~~rf~l~~l~lP~I~lA~~yGWQG~llasll 233 (497) T COG3851 178 RGKHLVWYLLLFIIGLLLQLGLPDELSRFTLFCLALPIIALAWHYGWQGALLASLL 233 (497) T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 54026999999999999981480766568899999999999999611078999999 No 7 >pfam09925 DUF2157 Predicted membrane protein (DUF2157). This domain, found in various hypothetical prokaryotic proteins, has no known function. Probab=39.91 E-value=28 Score=15.47 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=32.2 Q ss_pred CHHHH-HHHHHHHHHHHHHHCCCC--CHHHHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 27799-999999999996201457--879999999----9999999997147435999999999999999999 Q gi|254780356|r 30 FFLFI-PVFLAFGAIFWFVYSPEI--PIWGIVLSI----LIIAIISLRIRYSHPHILLIVKTLTYFLTRMILA 95 (120) Q Consensus 30 lflW~-PV~lg~GI~~YF~L~~EP--~~~~~~~~~----~~~~~~~~~~r~~~~~~~~l~~~l~~~~~Gf~~A 95 (120) .+.++ -+++|+|+..+|+...|- ...-+.... .......+..++.++...-.+..+..+..|...+ T Consensus 34 il~~lGalllg~gvi~fvAaNW~~i~r~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~all~l~~~~~Ga~ia 106 (144) T pfam09925 34 ILLWLGALLLGAGVIFFVAANWEEIPRFAKFGLLLALLVGLALGGFWLWRRGKPRLGEALLLLGALLFGALLA 106 (144) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999829874688999999999999999999999347963999999999999999999 No 8 >PRK13743 conjugal transfer protein TrbF; Provisional Probab=38.39 E-value=28 Score=15.44 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=48.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC----CCCHH Q ss_conf 14564007999999999999989855982779999999999999620145787999999999999999971----47435 Q gi|254780356|r 2 LQKKISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFVYSPEIPIWGIVLSILIIAIISLRIR----YSHPH 77 (120) Q Consensus 2 ~~~~~~~~~~~i~~~i~~~l~~E~~~G~lflW~PV~lg~GI~~YF~L~~EP~~~~~~~~~~~~~~~~~~~r----~~~~~ 77 (120) ++.+.++|-..|-|-=+.-.-.++..++-|-..-|++.+||.+|--... .--+++-.|.+- +.+-. T Consensus 12 mke~~~~~e~kIrq~~rd~~y~~r~~~~Y~~LfiVFltAG~vLw~vM~~----------iFd~cIDsWkAdpeLnn~rym 81 (140) T PRK13743 12 MKEKKNDAELKIRQTKRDYKYISRISDIYFDLFIVFLTAGIVLWVVMHI----------IFDACIDSWKADPELNNFRYM 81 (140) T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHCCHHHHHHHHH T ss_conf 8752368440045578777774204657787999999843999999999----------999888845338745219999 Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999----99999999999999999986 Q gi|254780356|r 78 ILLIV----KTLTYFLTRMILAAIEITRN 102 (120) Q Consensus 78 ~~~l~----~~l~~~~~Gf~~A~~Rt~~v 102 (120) |..+. ..+-+++.||.++..+..-. T Consensus 82 WNilMYaIPytL~AlaaGFlv~~~~~p~~ 110 (140) T PRK13743 82 WNILMYAIPYTLWALAAGFLVAGVRNPLC 110 (140) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999974174443133589 No 9 >pfam05957 DUF883 Bacterial protein of unknown function (DUF883). This family consists of several hypothetical bacterial proteins of unknown function. Probab=35.83 E-value=33 Score=15.12 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 456400799999999999998985598277999999999999962 Q gi|254780356|r 3 QKKISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFV 47 (120) Q Consensus 3 ~~~~~~~~~~i~~~i~~~l~~E~~~G~lflW~PV~lg~GI~~YF~ 47 (120) |++.++..-....+.+.....-.++=|--||--|..++|+|+-.+ T Consensus 44 r~~~~~~~~~~~~~~~~~~~~~d~yV~~~Pw~svgiAagvG~llG 88 (94) T pfam05957 44 RERLGDAADAAAERARDAADAADDYVHENPWQAVGIAAGVGLLLG 88 (94) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 999999999999999999998999998792999999999999999 No 10 >pfam08105 Antimicrobial10 Metchnikowin family. This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi. Probab=23.72 E-value=45 Score=14.38 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHH----HHHHHHHCCCCCCCE Q ss_conf 99999999999999----999986342207837 Q gi|254780356|r 83 KTLTYFLTRMILAA----IEITRNPTTILSQSI 111 (120) Q Consensus 83 ~~l~~~~~Gf~~A~----~Rt~~vaapVL~~~~ 111 (120) .++++.++|..+++ -+.++-.+|+.|.|- T Consensus 6 GAifLalL~~~a~~~~v~~e~~~~qGPIFDTRP 38 (52) T pfam08105 6 GAIFLALLGVMATATSVLAEPHRHQGPIFDTRP 38 (52) T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 799999999998256666751003588656788 No 11 >COG5548 Small integral membrane protein [Function unknown] Probab=21.70 E-value=60 Score=13.74 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=38.2 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999996201457879999999999999999714743599999999999999999 Q gi|254780356|r 36 VFLAFGAIFWFVYSPEIPIWGIVLSILIIAIISLRIRYSHPHILLIVKTLTYFLTRMIL 94 (120) Q Consensus 36 V~lg~GI~~YF~L~~EP~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~l~~~~~Gf~~ 94 (120) ....-|+..||--...|+...-....+....+..+.-+++..-..+.......+++|.. T Consensus 13 L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~g~~~Gl~~A~~~s~~Ll~~~~ 71 (105) T COG5548 13 LATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQGQTWGLILATVVSAALLVFFA 71 (105) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCC T ss_conf 99963578887538800237888986799999999981866585049999999999621 Done!