Query gi|254780356|ref|YP_003064769.1| hypothetical protein CLIBASIA_01205 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 120 No_of_seqs 107 out of 144 Neff 5.5 Searched_HMMs 33803 Date Wed Jun 1 12:21:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780356.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1eys_M Photosynthetic reactio 10.6 1.1E+02 0.0031 12.2 2.4 19 32-50 2-20 (148) 2 >1mn8_A Core protein P15; heli 9.2 74 0.0022 12.9 -0.1 37 12-56 60-98 (100) 3 >1p0i_A Cholinesterase; serine 7.0 80 0.0024 12.8 -0.8 18 19-36 41-58 (59) 4 >2jok_A Putative G-nucleotide 6.5 97 0.0029 12.4 -0.5 29 1-29 9-37 (186) 5 >2wjn_M Reaction center protei 6.1 1.7E+02 0.0051 11.1 2.4 19 32-50 2-20 (148) 6 >2wjn_L Reaction center protei 5.9 1.8E+02 0.0052 11.0 2.2 19 32-50 2-20 (160) 7 >1n1c_A TORA specific chaperon 4.6 2.2E+02 0.0065 10.5 0.7 22 19-40 24-45 (89) 8 >3ii1_A Cellulase; CELM2, gluc 4.1 1.5E+02 0.0044 11.4 -0.9 13 44-56 157-169 (208) 9 >2hfr_A Fowlicidin-3, cathelic 3.8 84 0.0025 12.7 -2.3 20 30-49 3-25 (27) 10 >1joy_A Protein (ENVZ_ecoli); 3.8 2.6E+02 0.0076 10.2 3.0 25 2-26 19-43 (67) No 1 >>1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} (M:142-289) Probab=10.55 E-value=1.1e+02 Score=12.15 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHHHCC Q ss_conf 7999999999999962014 Q gi|254780356|r 32 LFIPVFLAFGAIFWFVYSP 50 (120) Q Consensus 32 lW~PV~lg~GI~~YF~L~~ 50 (120) +|+|++|+.=|.+|.++-. T Consensus 2 ~hi~~AFs~aI~~~~~l~~ 20 (148) T 1eys_M 2 QHLSWAFAAAIFFYLVLGF 20 (148) T ss_dssp THHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHE T ss_conf 0475999999999987660 No 2 >>1mn8_A Core protein P15; helical bundle, viral protein; 1.00A {Moloney murine leukemia virus} (A:) Probab=9.18 E-value=74 Score=12.94 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 999999999998985598--277999999999999962014578799 Q gi|254780356|r 12 NIIQHVKYLIQLEQEYGG--FFLFIPVFLAFGAIFWFVYSPEIPIWG 56 (120) Q Consensus 12 ~i~~~i~~~l~~E~~~G~--lflW~PV~lg~GI~~YF~L~~EP~~~~ 56 (120) .+|+++..-+..|--.|| =++. |-.|++|..+|+.|+ T Consensus 60 ~~I~~v~~~i~~~G~~ghpDqvPY--------I~tw~~La~~Pppw~ 98 (100) T 1mn8_A 60 DLITQVKIKVFSPGPHGHPDQVPY--------IVTWEALAFDPPPWV 98 (100) T ss_dssp HHHHHHHHHHTSCTTSSCGGGHHH--------HHHHHHHHHSCCTTC T ss_pred HHHHHHHHHHCCCCCCCCCCCCCH--------HHHHHHHHHCCCCCC T ss_conf 789998867116799999775624--------999999977769878 No 3 >>1p0i_A Cholinesterase; serine hydrolase, butyrate; HET: NAG FUC MES; 2.00A {Homo sapiens} (A:231-289) Probab=7.03 E-value=80 Score=12.78 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=11.1 Q ss_pred HHHHHHHHCCCCHHHHHH Q ss_conf 999989855982779999 Q gi|254780356|r 19 YLIQLEQEYGGFFLFIPV 36 (120) Q Consensus 19 ~~l~~E~~~G~lflW~PV 36 (120) ..+..|.+.-..|+|.|| T Consensus 41 ~l~~~~~~~~~~~pF~PV 58 (59) T 1p0i_A 41 EILLNEAFVVPYGTPLSV 58 (59) T ss_dssp HHHHHHGGGSSSCCTTCC T ss_pred HHHHHHHHHCCCCCCCCC T ss_conf 999854431124777653 No 4 >>2jok_A Putative G-nucleotide exchange factor; guanine nucleotide exchange factor, type III secretion, SOPE, SOPE2, cell invasion; NMR {Burkholderia pseudomallei} (A:) Probab=6.53 E-value=97 Score=12.36 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=17.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 91456400799999999999998985598 Q gi|254780356|r 1 MLQKKISNPLCNIIQHVKYLIQLEQEYGG 29 (120) Q Consensus 1 ~~~~~~~~~~~~i~~~i~~~l~~E~~~G~ 29 (120) ||||++.+..-++...-+-.|++..+++| T Consensus 9 ~ir~~~d~~~~~~a~~~~~~~~kDp~y~R 37 (186) T 2jok_A 9 AIRHFVDEAVKQVAHARTPEIRQDAEFGR 37 (186) T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHCSSHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 99999999999874227841123879999 No 5 >>2wjn_M Reaction center protein M chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M* 2i5n_M* 1prc_M* 1r2c_M* 1vrn_M* 1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 5prc_M* 6prc_M* 7prc_M* 3g7f_M* (M:142-289) Probab=6.06 E-value=1.7e+02 Score=11.06 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHHHHHCC Q ss_conf 7999999999999962014 Q gi|254780356|r 32 LFIPVFLAFGAIFWFVYSP 50 (120) Q Consensus 32 lW~PV~lg~GI~~YF~L~~ 50 (120) .|+|++|+.=|..|.++-. T Consensus 2 ~hia~AFsaaI~~~~~l~~ 20 (148) T 2wjn_M 2 THIAWNFAAAIFFVLCIGC 20 (148) T ss_dssp SHHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 2355999999999998762 No 6 >>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2i5n_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L* (L:115-274) Probab=5.90 E-value=1.8e+02 Score=11.01 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHHHCC Q ss_conf 7999999999999962014 Q gi|254780356|r 32 LFIPVFLAFGAIFWFVYSP 50 (120) Q Consensus 32 lW~PV~lg~GI~~YF~L~~ 50 (120) .|+|++|+.=|..|.++-. T Consensus 2 ~hi~~AFsaaI~a~~~l~~ 20 (160) T 2wjn_L 2 WHVPLAFCVPIFMFCVLQV 20 (160) T ss_dssp SHHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHHE T ss_conf 0556999999999998750 No 7 >>1n1c_A TORA specific chaperone; TORD, 3D-domain swapping; 2.40A {Shewanella massilia} (A:129-217) Probab=4.55 E-value=2.2e+02 Score=10.52 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=14.5 Q ss_pred HHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999898559827799999999 Q gi|254780356|r 19 YLIQLEQEYGGFFLFIPVFLAF 40 (120) Q Consensus 19 ~~l~~E~~~G~lflW~PV~lg~ 40 (120) ...+++-=..|+.+|+|-+... T Consensus 24 ~~~q~~Fl~~HL~~W~~~f~~~ 45 (89) T 1n1c_A 24 NSVQLSFLQTCVNSWLAKFINH 45 (89) T ss_dssp HHHHHHHHHHHTTTTHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 8899999999999999999999 No 8 >>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A (A:43-250) Probab=4.13 E-value=1.5e+02 Score=11.40 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=9.4 Q ss_pred HHHHHCCCCCHHH Q ss_conf 9962014578799 Q gi|254780356|r 44 FWFVYSPEIPIWG 56 (120) Q Consensus 44 ~YF~L~~EP~~~~ 56 (120) -|++|+.||.+|. T Consensus 157 k~ysLDNEp~LW~ 169 (208) T 3ii1_A 157 RYYILDNEPSIWF 169 (208) T ss_dssp CEEEECSCGGGHH T ss_pred EEEEECCCCCCCC T ss_conf 2899789764468 No 9 >>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic} (A:) Probab=3.83 E-value=84 Score=12.67 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=9.8 Q ss_pred CHHHHHHHH---HHHHHHHHHHC Q ss_conf 277999999---99999996201 Q gi|254780356|r 30 FFLFIPVFL---AFGAIFWFVYS 49 (120) Q Consensus 30 lflW~PV~l---g~GI~~YF~L~ 49 (120) ..+.+||+. ++||-+|-+.+ T Consensus 3 fwplvpvaintvaaginlykair 25 (27) T 2hfr_A 3 FWPLVPVAINTVAAGINLYKAIR 25 (27) T ss_dssp SCSSSSSHHHHHHHHHTSTTTTT T ss_pred CCCCCHHHHHHHHHHHHHHHHHH T ss_conf 66543014556887667999984 No 10 >>1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation, transferase; NMR {Escherichia coli} (A:) Probab=3.76 E-value=2.6e+02 Score=10.17 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=18.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1456400799999999999998985 Q gi|254780356|r 2 LQKKISNPLCNIIQHVKYLIQLEQE 26 (120) Q Consensus 2 ~~~~~~~~~~~i~~~i~~~l~~E~~ 26 (120) +-|-+++|++.|............+ T Consensus 19 isHeLrtPL~~i~~~~e~l~~~~~~ 43 (67) T 1joy_A 19 VSHDLRTPLTRIRLATEMMSEQDGY 43 (67) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTH T ss_pred HHHHHCCHHHHHHHHHHHHHCCCHH T ss_conf 5176146488888799870235799 Done!