RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780356|ref|YP_003064769.1| hypothetical protein
CLIBASIA_01205 [Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
>gnl|CDD|163411 TIGR03699, mena_SCO4550, menaquinone biosynthesis protein, SCO4550
family. members of this protein family are involved in
menaquinone biosynthesis by an alternate pathway via
futalosine.
Length = 340
Score = 29.9 bits (68), Expect = 0.15
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 13 IIQHVKYLIQLEQEYGGFFLFIP 35
I+H++ + +L+ + GGF FIP
Sbjct: 212 RIEHLERIRELQDKTGGFTAFIP 234
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 27.2 bits (61), Expect = 0.93
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 46 FVYSPEIPIWGIVLSILIIAIIS----LRIRYSHP 76
F YS ++ + + L+++ IA+ L++R
Sbjct: 271 FYYSWKLALVAVALALVAIAVTLVLGLLQVRKERR 305
>gnl|CDD|163412 TIGR03700, mena_SCO4494, putative menaquinone biosynthesis protein,
SCO4494 family. Members of this protein family appear
to be involved in menaquinone biosynthesis by an
alternate pathway via futalosine, based on close
phylogenetic correlation with known markers of the
futalosine pathway, gene clustering in many organisms,
and paralogy with the SCO4550 protein.
Length = 351
Score = 27.0 bits (60), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 14 IQHVKYLIQLEQEYGGFFLFIPVFLAF 40
+ H+ L +L+ E GGF FIP LAF
Sbjct: 220 VDHMLRLRELQDETGGFQAFIP--LAF 244
>gnl|CDD|150474 pfam09810, Morph_protein1, Defects in morphology protein 1,
mitochondrial precursor. Members of this family of
proteins are thought to be involved in cellular
morphology, though little else is known about them.
Length = 329
Score = 26.6 bits (59), Expect = 1.8
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 51 EIPIWGIVLSILIIAII-SLRIRYSHPHI--LLIVKTLTYFLTRMILAAIEITRNPTTIL 107
E+P+WG+V L+ II L P + + ++ +I++ + R+ +
Sbjct: 96 ELPVWGVVKGELLNGIIDELSYENPDPSLEETAASNYSSNAISELIISDTKTRRSKSLPS 155
Query: 108 SQSITTNL 115
L
Sbjct: 156 EAQKRPTL 163
>gnl|CDD|148714 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 26.4 bits (58), Expect = 1.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 79 LLIVKTLTYFLTRMILAAIEITRNPTTILSQSITT 113
LLI K LTR I A I P L+Q + T
Sbjct: 7 LLIAKLAGQILTRDIAAVDVIMHTPERSLNQKLDT 41
>gnl|CDD|182960 PRK11098, PRK11098, microcin B17 transporter; Reviewed.
Length = 409
Score = 26.1 bits (58), Expect = 2.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 30 FFLFIPVFLAFGAIFWFVYSPE-IPIWGIVLSILIIAII 67
F+ + V + A FWF+YSP W I+ S LII +
Sbjct: 63 FYAYYLVCVGLFAGFWFIYSPHPWQRWSILGSALIIFVT 101
>gnl|CDD|181427 PRK08445, PRK08445, hypothetical protein; Provisional.
Length = 348
Score = 25.8 bits (57), Expect = 2.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 13 IIQHVKYLIQLEQEYGGFFLFI 34
II+H + + L+ E GGF FI
Sbjct: 213 IIEHWERIRDLQDETGGFRAFI 234
>gnl|CDD|181426 PRK08444, PRK08444, hypothetical protein; Provisional.
Length = 353
Score = 25.4 bits (56), Expect = 3.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 14 IQHVKYLIQLEQEYGGFFLFIP 35
I H+ L L+ + GGF FIP
Sbjct: 221 IDHMLRLRDLQDKTGGFNAFIP 242
>gnl|CDD|180943 PRK07360, PRK07360, FO synthase subunit 2; Reviewed.
Length = 371
Score = 25.2 bits (56), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 13 IIQHVKYLIQLEQEYGGFFLFIPVFLAF 40
I H+ L +++QE GG F+P L F
Sbjct: 232 RIDHLLILREIQQETGGITEFVP--LPF 257
>gnl|CDD|178158 PLN02543, PLN02543, pfkB-type carbohydrate kinase family protein.
Length = 496
Score = 25.3 bits (55), Expect = 4.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 48 YSPE--IPIWGIVLSILIIAIISLRIRYSHP 76
Y+PE P+W L +L++ +LRI Y P
Sbjct: 374 YTPEEIAPLWHDGLKLLLVTDGTLRIHYYTP 404
>gnl|CDD|183106 PRK11375, PRK11375, allantoin permease; Provisional.
Length = 484
Score = 24.7 bits (54), Expect = 5.8
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 34 IPVFLAFGAIFWFVYSPEIPIWGIVLSILIIAII 67
+P ++ G F S + I+LS IA +
Sbjct: 43 VPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAV 76
>gnl|CDD|177611 PHA03374, PHA03374, hypothetical protein; Provisional.
Length = 730
Score = 24.6 bits (54), Expect = 7.2
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 42 AIFWFVYSPEIPIWGIVLSILIIAIISLRIRYSHPHI 78
A FW Y P + + + + + +S P
Sbjct: 302 ASFWLQYPPSGAMLRVAMCMAVAPHVSHECTELSPGW 338
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional.
Length = 457
Score = 24.4 bits (53), Expect = 7.2
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 39 AFGAIFWFVYSPEIPIWGIVLSI-LIIAIISL 69
AFG I+ V+ P +P W VLS+ LII ++L
Sbjct: 109 AFG-IYMGVWFPTVPHWIWVLSVVLIICAVNL 139
>gnl|CDD|178837 PRK00068, PRK00068, hypothetical protein; Validated.
Length = 970
Score = 24.2 bits (53), Expect = 7.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 32 LFIPVFLAFGAIFW 45
LFIPV L G I +
Sbjct: 63 LFIPVGLLVGGIVF 76
>gnl|CDD|152512 pfam12077, DUF3556, Transmembrane protein of unknown function
(DUF3556). This family of transmembrane proteins is
functionally uncharacterized. This protein is found in
bacteria. Proteins in this family are typically between
576 to 592 amino acids in length.
Length = 574
Score = 24.2 bits (53), Expect = 8.1
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 36 VFLAFGAIFWFVYSPEIPIWGIVLSILIIAIISL 69
VF FG +F FV + + + L+ +I++
Sbjct: 341 VFFIFGVLFLFVGHAGVGLADLSSPWLLAVLIAV 374
>gnl|CDD|162084 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083).
Length = 481
Score = 24.2 bits (53), Expect = 8.2
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 7 SNPLCNIIQHVKYLIQLEQ-EYGGFFLFIPVFLAFGAIFWFVYSPE 51
+N L N I + LE GG F+F G IF + + PE
Sbjct: 427 ANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE 472
>gnl|CDD|149061 pfam07787, DUF1625, Protein of unknown function (DUF1625).
Sequences making up this family are derived from
hypothetical proteins expressed by both prokaryotic and
eukaryotic species. The region in question is
approximately 250 residues long.
Length = 247
Score = 24.3 bits (53), Expect = 8.6
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 12 NIIQHVKYLIQLEQEY--GGFFLF-----IPVFLAFGAIFWFVYSP 50
+ + + +I L GGFF+ I + L A W Y P
Sbjct: 202 SPLVVLVDVIPLLGPLVGGGFFIVSLIISISLSLLTIAFAWLFYRP 247
>gnl|CDD|129517 TIGR00423, TIGR00423, radical SAM domain protein, CofH subfamily.
This protein family includes the CofH protein of
coenzyme F(420) biosynthesis from Methanocaldococcus
jannaschii, but appears to hit genomes more broadly than
just the subset that make coenzyme F(420), so that
narrower group is being built as a separate family.
Length = 309
Score = 24.3 bits (53), Expect = 9.2
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 13 IIQHVKYLIQLEQEYGGFFLFIP 35
++H+ + +++++ GGF FIP
Sbjct: 176 RVEHLLRIRKIQEKTGGFTEFIP 198
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.333 0.147 0.446
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,991,584
Number of extensions: 124287
Number of successful extensions: 620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 128
Length of query: 120
Length of database: 5,994,473
Length adjustment: 81
Effective length of query: 39
Effective length of database: 4,244,225
Effective search space: 165524775
Effective search space used: 165524775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.4 bits)