RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780356|ref|YP_003064769.1| hypothetical protein
CLIBASIA_01205 [Candidatus Liberibacter asiaticus str. psy62]
         (120 letters)



>2jyn_A UPF0368 protein YPL225W; novel fold, YST0336, YT51, ontario
           centre for structural proteomics, OCSP, PSI, protein
           structure initiative; NMR {Saccharomyces cerevisiae}
           (A:)
          Length = 146

 Score = 26.3 bits (58), Expect = 1.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 86  TYFLTRMILAAIEITRN 102
           T F+ R+   A EI RN
Sbjct: 118 TCFVVRLQFYAFEIARN 134


>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC;
           2.80A {Nitrosomonas europaea} (A:249-274,A:364-546)
          Length = 209

 Score = 26.1 bits (57), Expect = 1.8
 Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 2/31 (6%)

Query: 44  FWF--VYSPEIPIWGIVLSILIIAIISLRIR 72
                       + G +L    +A+I  R R
Sbjct: 174 LKGTGEKISLGGLGGGMLLAGALALIGWRKR 204


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.333    0.147    0.446 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 903,492
Number of extensions: 36826
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 21
Length of query: 120
Length of database: 4,956,049
Length adjustment: 72
Effective length of query: 48
Effective length of database: 2,522,089
Effective search space: 121060272
Effective search space used: 121060272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.4 bits)