RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780356|ref|YP_003064769.1| hypothetical protein CLIBASIA_01205 [Candidatus Liberibacter asiaticus str. psy62] (120 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 29.5 bits (66), Expect = 0.18 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 64/147 (43%) Query: 3 QKK---------ISNPLCNIIQHVKYLI----QLEQEYGG---FF----LFIPVF----- 37 ++K +++P H L+ + ++ F + IPV+ Sbjct: 411 ERKLKFSNRFLPVASPF-----HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465 Query: 38 --LAFGAIFWFVYSPEIPIWGIVLSILIIAIISLRIRY----SHP--HILLI-------V 82 L V S I ++ II L +++ HIL + Sbjct: 466 SDLR-------VLSGSI------SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512 Query: 83 KTLTYFL-----TRMILA-AIEITRNP 103 LT+ R+I+A ++I + Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDD 539 >2jyn_A UPF0368 protein YPL225W; novel fold, YST0336, YT51, ontario centre for structural proteomics, OCSP, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} Length = 146 Score = 26.2 bits (58), Expect = 1.6 Identities = 8/17 (47%), Positives = 10/17 (58%) Query: 86 TYFLTRMILAAIEITRN 102 T F+ R+ A EI RN Sbjct: 118 TCFVVRLQFYAFEIARN 134 >2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens} Length = 530 Score = 24.1 bits (52), Expect = 7.6 Identities = 13/124 (10%), Positives = 35/124 (28%), Gaps = 24/124 (19%) Query: 6 ISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFVYSPEIPIWGIVLSILIIA 65 +S P ++ + ++QE G L + + + Sbjct: 147 VSFPPQLSVREHAAWLLVKQEMGKQSLS------------LGRDDIVQL-KEAYKWITHP 193 Query: 66 IIS--LRIRYSHPHILLIVKTLTY--------FLTRMILAAIEITRNPTTILS-QSITTN 114 + S L + + + + FL + + +N ++ + ++ Sbjct: 194 LFSEELGVPIDGKSLFEVSVVFAHPETVEDCHFLAAICPDCFKPAKNKQSVFTRMAVMKA 253 Query: 115 LRGI 118 L I Sbjct: 254 LNKI 257 >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632 Score = 24.1 bits (51), Expect = 8.1 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 4/81 (4%) Query: 14 IQHVKY-LIQLEQEYGGFFLFIPVFLAFGAIFWFV---YSPEIPIWGIVLSILIIAIISL 69 ++ ++ + +L + G+ L++ +A + F S E G+ I++ Sbjct: 35 LEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYD 94 Query: 70 RIRYSHPHILLIVKTLTYFLT 90 ++R + +L K L Sbjct: 95 KMRSALELRVLFAKALGLICA 115 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.333 0.147 0.446 Gapped Lambda K H 0.267 0.0568 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,033,754 Number of extensions: 43357 Number of successful extensions: 152 Number of sequences better than 10.0: 1 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 33 Length of query: 120 Length of database: 5,693,230 Length adjustment: 81 Effective length of query: 39 Effective length of database: 3,729,466 Effective search space: 145449174 Effective search space used: 145449174 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 50 (23.4 bits)