HHsearch alignment for GI: 254780357 and conserved domain: pfam03772
>pfam03772 Competence Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.
Probab=99.88 E-value=2.3e-20 Score=135.98 Aligned_cols=173 Identities=18% Similarity=0.288 Sum_probs=135.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 02668855589998888820485567152135879999999999999861264113577764211456788888889999
Q gi|254780357|r 4 ITKKYDPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIYSSESHNTWTWKKISSIKQSFLNE 83 (394)
Q Consensus 4 ~~~~~~p~~~g~~i~~~v~L~~P~~p~~PGlFD~SF~asF~aVaaigff~~~p~~~~~~~~~~~~~~~~l~~Lr~~i~~~ 83 (394)
T Consensus 94 ~~r~~~~~~~l~~a~~~~Ll~~P~~~~~~g-----FqLSf~av~~i~~~~~~~~~~~~~--------~~~~~~~~----- 155 (270)
T pfam03772 94 LGRRISPLDSLALAALLLLLIDPLALLSAG-----FQLSFLAVAGLLLLAPRLQKRLSR--------LSPRLLAL----- 155 (270)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHHHHHHHH--------CCHHHHHH-----
T ss_conf 689998799999999999997477994879-----999999999999998999888764--------00579999-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996555588899999986010232788388899999999999999999999751-64168999999999999999999
Q gi|254780357|r 84 IRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIPILSFVVIPAGLIAILLMIL-SLDNIPFGVMAWGLDIIIHIAHR 162 (394)
Q Consensus 84 I~a~ls~~~~~a~~p~~~~~F~~~~~~~~~aNl~avP~~~~~v~p~~~~~~~l~p~-gl~~~~l~~mg~gi~~il~vA~~ 162 (394)
T Consensus 156 -~~~~s~~a~l~~~Pl~~~~F~~~s~~s~l~Nll~vPl~~~~~~p~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 234 (270)
T pfam03772 156 -LFLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLAALLLWLADWLLELLLALLEW 234 (270)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999999999999999387568999999999999999999999999999888889999999999999999999999
Q ss_pred HHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 71378762-2355772279999999999997146
Q gi|254780357|r 163 ISVAHNEF-CIGRIPETSFVTIVVEFLLMVFCKT 195 (394)
Q Consensus 163 va~~~ga~-~~~~~p~~~l~l~~~g~l~l~l~~~ 195 (394)
T Consensus 235 ~~~lp~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (270)
T pfam03772 235 LASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLL 268 (270)
T ss_pred HHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9729983764789879999999999999999995