Query         gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 394
No_of_seqs    195 out of 286
Neff          6.2 
Searched_HMMs 33803
Date          Wed Jun  1 12:40:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780357.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2e84_A High-molecular-weight   36.1      10 0.00031   15.9   0.4   23  194-216     5-27  (91)
  2 >2g04_A Probable fatty-acid-CO  30.6     9.2 0.00027   16.2  -0.6   54  307-364    56-111 (216)
  3 >3l07_A Bifunctional protein f  24.3      30  0.0009   13.2   1.1   54  303-365    68-121 (151)
  4 >3ge3_E Toluene-4-monooxygenas  20.4      42  0.0012   12.4   1.6   41  319-359    18-58  (92)
  5 >1b0a_A Protein (fold bifuncti  18.6      46  0.0014   12.1   1.9   47  310-365    73-119 (149)
  6 >2vjq_A Formyl-coenzyme A tran  17.7      49  0.0014   12.0   2.1   56  305-364    63-122 (243)
  7 >3cx5_C Cytochrome B-C1 comple  17.1      41  0.0012   12.5   0.5   33    9-42      5-37  (106)
  8 >1xk7_A Crotonobetainyl-COA:ca  16.2      53  0.0016   11.8   3.3   55  306-364    66-124 (263)
  9 >2qjy_A Cytochrome B; cytochro  14.7      58  0.0017   11.6   2.1   33   10-43      6-38  (104)
 10 >1a4i_A Methylenetetrahydrofol  14.4      55  0.0016   11.7   0.6   51  309-368    74-125 (157)

No 1  
>>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str} (A:1-91)
Probab=36.08  E-value=10  Score=15.89  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=13.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             46378987999999999985234
Q gi|254780357|r  194 KTNIRHIGSIMIGITIIILFTFP  216 (394)
Q Consensus       194 ~~~~R~~g~~~~~~~~~~l~~~~  216 (394)
                      +.++||+|.+....++.++.+++
T Consensus         5 K~~lr~~gil~~~a~v~~~~~~a   27 (91)
T 2e84_A            5 KSLLRWAGALVAVAAVTVFGLDA   27 (91)
T ss_dssp             -----------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             03999999999999999875653


No 2  
>>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis H37RV} (A:1-216)
Probab=30.59  E-value=9.2  Score=16.21  Aligned_cols=54  Identities=19%  Similarity=0.129  Sum_probs=35.0

Q ss_pred             CCCEEEEE--CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEE
Q ss_conf             78659997--17967866176535099962676677578870886688998509489997
Q gi|254780357|r  307 RSDVIVGV--LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITI  364 (394)
Q Consensus       307 ~~g~~va~--~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l  364 (394)
                      ++...+.+  .+.++.+.+-+..+|++|.+.+.-.    -+.+=+|.++|++.-.--|+.
T Consensus        56 rgKrsv~ld~~~~~~~~~~Li~~aDVvi~~~~pg~----~~~lGl~~~~L~~~nP~lv~~  111 (216)
T 2g04_A           56 RGKRIVDLDVKTQPQAMLELAAKADVLLDCFRPGT----CERLGIGPDDCASVNPRLIFA  111 (216)
T ss_dssp             TTCEEEECCC---CCTTHHHHTTCSEEEECSCTTH----HHHSSCSHHHHHHHCTTCEEE
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHCCHHEEECCCCC----HHHCCCCHHHHHHHCCCCEEE
T ss_conf             89859996698979999999752210112024560----541388889987545565678


No 3  
>>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} (A:1-8,A:121-263)
Probab=24.33  E-value=30  Score=13.19  Aligned_cols=54  Identities=17%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             EEECCCCEEEEECCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEEC
Q ss_conf             332378659997179678661765350999626766775788708866889985094899974
Q gi|254780357|r  303 VGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITII  365 (394)
Q Consensus       303 ~~~~~~g~~va~~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l~  365 (394)
                      ....++..+...-.+...+.+.|.+|||||+..-.+        -+++.+.+ +.|++-+..+
T Consensus        68 lL~~~ga~Vtv~~~~t~~l~e~~~~ADIVVsAtG~~--------~~i~~~~i-k~GaividvG  121 (151)
T 3l07_A           68 LLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKP--------NFITADMV-KEGAVVIDVG  121 (151)
T ss_dssp             HHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCT--------TCBCGGGS-CTTCEEEECC
T ss_pred             HHHCCCCEEEEEECCCCCHHHHHHHCCHHHHHCCCC--------CCCCCCCC-CCCCEEEEEC
T ss_conf             985589749998358999899865067666633897--------76643336-8997899925


No 4  
>>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 1g10_A 1g11_A 2bf2_A 2bf5_A 2bf3_A* 2bf3_B* (E:12-103)
Probab=20.39  E-value=42  Score=12.37  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=27.4

Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCC
Q ss_conf             78661765350999626766775788708866889985094
Q gi|254780357|r  319 DMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGS  359 (394)
Q Consensus       319 ~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga  359 (394)
                      |+..+++-.+.++|...+..-...+.+.++++++++.+.-.
T Consensus        18 eai~~dnP~~~i~V~d~~~~vrI~a~g~l~i~~~tieE~LG   58 (92)
T 3ge3_E           18 ETAEIDNPGKEITVEDRRAYVRIAAEGELILTRKTLEEQLG   58 (92)
T ss_dssp             HHHHHHCTTSCCEEEECSSEEEEEEESEEEEEHHHHHHHHT
T ss_pred             HHHHHHCCCCEEEEEECCCEEEEECCCEEEEEHHHHHHHHC
T ss_conf             99985798976899635868999229849998789799858


No 5  
>>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling; 2.56A {Escherichia coli} (A:1-7,A:120-261)
Probab=18.62  E-value=46  Score=12.14  Aligned_cols=47  Identities=17%  Similarity=0.238  Sum_probs=25.8

Q ss_pred             EEEEECCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEEC
Q ss_conf             59997179678661765350999626766775788708866889985094899974
Q gi|254780357|r  310 VIVGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITII  365 (394)
Q Consensus       310 ~~va~~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l~  365 (394)
                      .+...-.+...+.+.+.+|||||+....+        -+++.+.+ +.|++-+..+
T Consensus        73 tVt~~~~~t~~l~e~~~~ADIVVsA~G~~--------~~i~~~~i-k~gavViDvG  119 (149)
T 1b0a_A           73 TTTVTHRFTKNLRHHVENADLLIVAVGKP--------GFIPGDWI-KEGAIVIDVG  119 (149)
T ss_dssp             EEEEECSSCSCHHHHHHHCSEEEECSCCT--------TCBCTTTS-CTTCEEEECC
T ss_pred             CCCCCCCCCCCHHHHHCCHHHHHHHCCCC--------CCCCCCCC-CCCCEEEEEC
T ss_conf             42333224530122301024554420577--------75540222-6787899803


No 6  
>>2vjq_A Formyl-coenzyme A transferase; cytoplasm, class III COA transferase; HET: EPE; 1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A* 2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A* 2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A* (A:1-209,A:395-428)
Probab=17.67  E-value=49  Score=12.01  Aligned_cols=56  Identities=11%  Similarity=0.081  Sum_probs=36.6

Q ss_pred             ECCCCEEEEECCC----HHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEE
Q ss_conf             2378659997179----67866176535099962676677578870886688998509489997
Q gi|254780357|r  305 CHRSDVIVGVLKR----KDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITI  364 (394)
Q Consensus       305 ~~~~g~~va~~~~----~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l  364 (394)
                      ..++...+.+--+    .+.+.+-+..||++|.|.+...-    ..+=+|.++|++.-.--|+.
T Consensus        63 ~NrgKrsv~LDLk~~eGr~~l~~Li~~ADVli~n~rpg~l----~rlGl~~e~L~~~nP~LIy~  122 (243)
T 2vjq_A           63 FNCNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGAL----DRMGFTWEYIQELNPRVILA  122 (243)
T ss_dssp             TCTTCEEEEECTTSHHHHHHHHHHHHHCSEEEECCCTTHH----HHTTCCHHHHHHHCTTCEEE
T ss_pred             HCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEECCCCCHH----HHCCCCCHHHHHHCCCCCEE
T ss_conf             6799849998693978999999999639965778887448----65388704467658664011


No 7  
>>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} (C:108-213)
Probab=17.08  E-value=41  Score=12.47  Aligned_cols=33  Identities=6%  Similarity=-0.191  Sum_probs=24.5

Q ss_pred             CCHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHH
Q ss_conf             8555899988888204855671521358799999
Q gi|254780357|r    9 DPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSY   42 (394)
Q Consensus         9 ~p~~~g~~i~~~v~L~~P~~p~~PGlFD~SF~as   42 (394)
                      .-+-+|-.|.......+-.+-+.|= =|||||.-
T Consensus         5 ~~W~~Gv~i~ll~maTAF~GYVLPw-GQMSfWgA   37 (106)
T 3cx5_C            5 TLWNVGVIIFILTIATAFLGYCCVY-GQMSHWGA   37 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-BHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHEECCCCC-CCCCCHHH
T ss_conf             6159989999999999871033788-64422499


No 8  
>>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 1.60A {Escherichia coli} (A:1-224,A:370-408)
Probab=16.24  E-value=53  Score=11.81  Aligned_cols=55  Identities=15%  Similarity=0.092  Sum_probs=34.5

Q ss_pred             CCCCEEEEECCC----HHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEE
Q ss_conf             378659997179----67866176535099962676677578870886688998509489997
Q gi|254780357|r  306 HRSDVIVGVLKR----KDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITI  364 (394)
Q Consensus       306 ~~~g~~va~~~~----~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l  364 (394)
                      .++...+++--+    .+.+.+-+..+|++|.|.+...-    +.+=+|.++|++.-.--|+.
T Consensus        66 NrgK~si~LDLk~~eGr~~l~~Li~~ADVvIen~rPg~l----~rlGL~~e~L~~~nP~LI~~  124 (263)
T 1xk7_A           66 RRNLHALSLNIFKDEGREAFLKLXETTDIFIEASKGPAF----ARRGITDEVLWQHNPKLVIA  124 (263)
T ss_dssp             TTTCEEEEECTTSHHHHHHHHHHHTTCSEEEEECSSSHH----HHTTCCHHHHHHHCTTCEEE
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCCCEECCCCCCC----CCCCCCCCCCCCCCCCCEEE
T ss_conf             699759998798714289999998635876011222332----22232322100222221022


No 9  
>>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* (A:123-226)
Probab=14.67  E-value=58  Score=11.56  Aligned_cols=33  Identities=12%  Similarity=-0.048  Sum_probs=24.8

Q ss_pred             CHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
Q ss_conf             5558999888882048556715213587999999
Q gi|254780357|r   10 PFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYY   43 (394)
Q Consensus        10 p~~~g~~i~~~v~L~~P~~p~~PGlFD~SF~asF   43 (394)
                      -+-+|-.|.....-.+-.+-+.|= =|||||.--
T Consensus         6 ~W~~Gv~I~ll~maTAF~GYvLPW-GQMSfWgAt   38 (104)
T 2qjy_A            6 TWIVGMLIYLAMMATAFMGYVLPW-GQMSFWGAT   38 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTC-BHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHH
T ss_conf             346669999999999982232406-530024889


No 10 
>>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} (A:1-8,A:124-272)
Probab=14.44  E-value=55  Score=11.71  Aligned_cols=51  Identities=16%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             CEEEE-ECCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEECCCC
Q ss_conf             65999-7179678661765350999626766775788708866889985094899974776
Q gi|254780357|r  309 DVIVG-VLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITIIPPS  368 (394)
Q Consensus       309 g~~va-~~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l~~~~  368 (394)
                      |..|. .-.+...+.+.+.+|||||+..--+        -.++.+.+ +.|++-+..+-+.
T Consensus        74 ga~Vtv~~~~t~~l~~~~~~ADIvVta~G~~--------~~i~~~~i-k~gaiviDvG~~~  125 (157)
T 1a4i_A           74 NATVTTCHSKTAHLDEEVNKGDILVVATGQP--------EMVKGEWI-KPGAIVIDCGINY  125 (157)
T ss_dssp             TCEEEEECTTCSSHHHHHTTCSEEEECCCCT--------TCBCGGGS-CTTCEEEECCCBC
T ss_pred             CCEEEEEECCCCCHHHHHHCCCCCCCCCCCC--------CCCCHHHC-CCCCCEEECCCCC
T ss_conf             8769985134530366752123200013665--------50013123-7898354026633


Done!