Query gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 394
No_of_seqs 195 out of 286
Neff 6.2
Searched_HMMs 23785
Date Mon May 30 09:45:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780357.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ge3_E Toluene-4-monooxygenase 24.5 24 0.001 12.9 1.6 39 319-357 29-67 (103)
2 2e84_A High-molecular-weight c 20.2 21 0.0009 13.2 0.4 24 194-217 5-28 (556)
3 1y0k_A Hypothetical protein PA 15.8 38 0.0016 11.7 1.4 53 214-266 51-110 (209)
4 2g04_A Probable fatty-acid-COA 13.3 38 0.0016 11.8 0.3 39 315-360 283-321 (359)
5 1vf5_G Protein PET G; photosyn 11.8 50 0.0021 11.1 1.5 24 200-223 11-34 (37)
6 1xk7_A Crotonobetainyl-COA:car 9.8 59 0.0025 10.7 1.8 47 315-368 305-351 (408)
7 2vhw_A Alanine dehydrogenase; 9.3 62 0.0026 10.5 2.9 48 317-367 221-270 (377)
8 1jb0_I Photosystem 1 reaction 8.7 65 0.0027 10.4 2.9 21 117-138 13-33 (38)
9 1q7e_A Hypothetical protein YF 6.4 89 0.0038 9.6 3.0 45 315-366 320-364 (428)
10 2vjq_A Formyl-coenzyme A trans 6.3 91 0.0038 9.5 2.0 41 316-363 331-371 (428)
No 1
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 1g10_A 1g11_A 2bf2_A 2bf5_A 2bf3_A* 2bf3_B*
Probab=24.47 E-value=24 Score=12.86 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHH
Q ss_conf 786617653509996267667757887088668899850
Q gi|254780357|r 319 DMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQ 357 (394)
Q Consensus 319 ~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~ 357 (394)
|++.+|+=.++++|...+..-...+.+.++|+++++.+.
T Consensus 29 eai~~DNP~~~v~V~d~~a~vrI~a~g~L~i~r~tieE~ 67 (103)
T 3ge3_E 29 ETAEIDNPGKEITVEDRRAYVRIAAEGELILTRKTLEEQ 67 (103)
T ss_dssp HHHHHHCTTSCCEEEECSSEEEEEEESEEEEEHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCEEEEECCCEEEEEHHHHHHH
T ss_conf 999857999778995058789991398599987897998
No 2
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Probab=20.16 E-value=21 Score=13.20 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 463789879999999999852346
Q gi|254780357|r 194 KTNIRHIGSIMIGITIIILFTFPY 217 (394)
Q Consensus 194 ~~~~R~~g~~~~~~~~~~l~~~~~ 217 (394)
|..+||+|++.+.++++++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (556)
T 2e84_A 5 KSLLRWAGALVAVAAVTVFGLDAR 28 (556)
T ss_dssp ------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 137888899999999988888861
No 3
>1y0k_A Hypothetical protein PA4535; structural genomics, midwest center for structural genomics, MCSG, pseudomonas aeuruginosa PAO1; 1.75A {Pseudomonas aeruginosa PAO1} SCOP: c.52.1.31
Probab=15.80 E-value=38 Score=11.74 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=36.4
Q ss_pred HCCCCCCCEEEECCCCCEEEEECCCEEEEE-------CCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 234677734898699968799748804663-------47744137988987517653333
Q gi|254780357|r 214 TFPYSFSPDLLISEKGNLVALVDKNTLISN-------YSNPPSFIFSQWKSALITPFHEA 266 (394)
Q Consensus 214 ~~~~~~~PdilIs~dG~lVav~~~~g~~~~-------~~r~~~F~~~~W~~~~g~~~~~~ 266 (394)
..+..++||+|.-+.+--|=..-.+|+-++ ..|.+.|..+|-.+...-+....
T Consensus 51 ~~~~qeppdvlfrda~fevffvldegrrlndewreel~rrrsa~slsqlvrrearp~ri~ 110 (209)
T 1y0k_A 51 AAPGEQPPDVLFKGAGFEVFFVLDEGRRLNEEWREELTRRRQAVSLRQLIRREERPQRIA 110 (209)
T ss_dssp ECCSSSSCSEEETTEEEEEEEEECC-----------------------------CCEEEE
T ss_pred CCCCCCCCCEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
T ss_conf 876789986233168757999844664026999999998886501999986440656585
No 4
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis H37RV}
Probab=13.31 E-value=38 Score=11.76 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=24.6
Q ss_pred CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCE
Q ss_conf 1796786617653509996267667757887088668899850948
Q gi|254780357|r 315 LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSL 360 (394)
Q Consensus 315 ~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ 360 (394)
.++.+.+.+.|+.+++........ ..+++-..++.+|.+
T Consensus 283 ~~t~~ew~~~l~~~gvp~~pV~~~-------~ev~~dpq~~arg~~ 321 (359)
T 2g04_A 283 SRTRDEWTRVFAGTDACVTPVLAW-------SEAANNDHLKARSTV 321 (359)
T ss_dssp TSCHHHHHHHTTTSTTCEEECCCH-------HHHHTCHHHHHTTSE
T ss_pred HCCHHHHHHHHHHCCCCEEECCCH-------HHHHHCHHHHHHCCE
T ss_conf 247999999987669848846999-------998779798972999
No 5
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=11.80 E-value=50 Score=11.06 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 879999999999852346777348
Q gi|254780357|r 200 IGSIMIGITIIILFTFPYSFSPDL 223 (394)
Q Consensus 200 ~g~~~~~~~~~~l~~~~~~~~Pdi 223 (394)
+|++|+-++.+-...+.|.+|.|-
T Consensus 11 LGlipvTl~GLFvaAy~QYrRg~q 34 (37)
T 1vf5_G 11 LGLVFATLGGLFYAAYQQYKRPNE 34 (37)
T ss_dssp HHHHHHHHHHHTHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 863899999999999999720242
No 6
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A* 1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Probab=9.80 E-value=59 Score=10.65 Aligned_cols=47 Identities=6% Similarity=-0.074 Sum_probs=31.3
Q ss_pred CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEECCCC
Q ss_conf 179678661765350999626766775788708866889985094899974776
Q gi|254780357|r 315 LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITIIPPS 368 (394)
Q Consensus 315 ~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l~~~~ 368 (394)
.++.+.+.+.|+.++|-+....... .+++-..++.+|.+.=+-.+++
T Consensus 305 ~~t~~e~~~~l~~~gvp~~pV~~~~-------e~~~dpq~~~r~~~~~~~~~~~ 351 (408)
T 1xk7_A 305 THTIAEVKERFAELNIACAKVLTVP-------ELESNPQYVARESITQWQTMDG 351 (408)
T ss_dssp TSCHHHHHHHHHHTTCEEEECCCGG-------GSTTCHHHHHHTCEEEEECTTS
T ss_pred HHCHHHHHHHHHHCCCEEECCCCHH-------HHHHCHHHHHHCCEEEEECCCC
T ss_conf 5021235778986696130378999-------9867989997099898876899
No 7
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=9.30 E-value=62 Score=10.54 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=34.9
Q ss_pred CHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHH--HHCCEEEEECCC
Q ss_conf 967866176535099962676677578870886688998--509489997477
Q gi|254780357|r 317 RKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQ--KQGSLEITIIPP 367 (394)
Q Consensus 317 ~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~--~~Ga~ai~l~~~ 367 (394)
....+.+.+..+||||+....+. ...+.+++.+.+. +.||+-+.+.-+
T Consensus 221 ~~~~~~~~~~~~DivI~~~~i~g---~~~p~li~~~~v~~mk~gsVIvDva~d 270 (377)
T 2vhw_A 221 SAYELEGAVKRADLVIGAVLVPG---AKAPKLVSNSLVAHMKPGAVLVDIAID 270 (377)
T ss_dssp CHHHHHHHHHHCSEEEECCCCTT---SCCCCCBCHHHHTTSCTTCEEEEGGGG
T ss_pred HHHHHHHHCCCCEEEEEECCCCC---CCCCCCCHHHHHHCCCCCCEEEEECCC
T ss_conf 56655420024428997124579---889834719898527899889996514
No 8
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1
Probab=8.68 E-value=65 Score=10.39 Aligned_cols=21 Identities=19% Similarity=0.626 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999975
Q gi|254780357|r 117 LAIPILSFVVIPAGLIAILLMI 138 (394)
Q Consensus 117 ~avP~~~~~v~p~~~~~~~l~p 138 (394)
+-||+++ |.||.-+.+++..-
T Consensus 13 ilipvv~-wl~p~vvmgllfiy 33 (38)
T 1jb0_I 13 IFIPVVC-WLMPTVVMGLLFLY 33 (38)
T ss_dssp HHHHHHH-THHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHEE
T ss_conf 8999999-99999999887158
No 9
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structure initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A*
Probab=6.38 E-value=89 Score=9.60 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=26.1
Q ss_pred CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEECC
Q ss_conf 1796786617653509996267667757887088668899850948999747
Q gi|254780357|r 315 LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITIIP 366 (394)
Q Consensus 315 ~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l~~ 366 (394)
.++.+.+.+.|+.+++-+.....+. .+++-..++.+|...-.-.+
T Consensus 320 ~~t~~e~~~~l~~~~vp~~pV~~~~-------e~~~dpq~~~rg~~~~v~~p 364 (428)
T 1q7e_A 320 TIDKHEAVAYLTQFDIPCAPVLSMK-------EISLDPSLRQSGSVVEVEQP 364 (428)
T ss_dssp TSCHHHHHHHHGGGTCCEEECCCHH-------HHHHCHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHCCCCEEEECCCHH-------HHHHCHHHHHHCCEEEEECC
T ss_conf 0102777776530583168669999-------98769798970999997769
No 10
>2vjq_A Formyl-coenzyme A transferase; cytoplasm, class III COA transferase; HET: EPE; 1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A* 2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A* 2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Probab=6.28 E-value=91 Score=9.55 Aligned_cols=41 Identities=20% Similarity=0.069 Sum_probs=24.1
Q ss_pred CCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEE
Q ss_conf 796786617653509996267667757887088668899850948999
Q gi|254780357|r 316 KRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEIT 363 (394)
Q Consensus 316 ~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~ 363 (394)
++.+.+.+.|+.++|-+.....+ ..+++-..++.+|-..=.
T Consensus 331 ~t~~e~~~~l~~~gvp~~pV~~~-------~e~~~dpq~~~r~~~~~v 371 (428)
T 2vjq_A 331 KDKFEVTEWAAQYGIPCGPVMSM-------KELAHDPSLQKVGTVVEV 371 (428)
T ss_dssp SCHHHHHHHHHHTTCCEEECCCH-------HHHHTCHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHCCCEEEECCCH-------HHHHHCHHHHHHCCEEEE
T ss_conf 78999998875059348969889-------998769788972999987
Done!