RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62] (394 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 51.5 bits (123), Expect = 3e-07 Identities = 56/435 (12%), Positives = 104/435 (23%), Gaps = 198/435 (45%) Query: 20 IARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIYS-----SESHNTWTWKKIS 74 A+L + + +Y K S N ++ Sbjct: 105 AAKLLQENDTTLVKTKEL-IKNYITARIMAK--RPFDKKSNSALFRAVGEGNA----QLV 157 Query: 75 SI--KQ----SFLNEIRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIPILSFVVIP 128 +I Q + E+R TY L+ +++ Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHV------------------LVGDLIKF--------- 190 Query: 129 AGLIAILLMILSLDNI--------PFGVMAWGLDIIIHIAHRISVAHNEFCIGRIPETSF 180 A L L + ++ W + + + ++ + IP S Sbjct: 191 ---SAETLSELIRTTLDAEKVFTQGLNILEW-------LENPSNTPDKDYLLS-IP-ISC 238 Query: 181 VTI-VVEFL-LMVFCKTNIRHIG---SIMIGIT-----II-------------------- 210 I V++ +V K G S + G T ++ Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298 Query: 211 ---ILF--------TFPYSFSPDLLIS---EKGN----------------LVALVDK-NT 239 +LF +P + P ++ E + V+K N+ Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358 Query: 240 -----------LISNYSN-----PP---------------------SFI-FSQWKSAL-- 259 L++ N PP S I FS+ K Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418 Query: 260 ----IT-PFHEAPHVQ------KEDLQEKN----QSSLK---------EILRSMQ----P 291 + PFH + + +DL + N ++ LR + Sbjct: 419 RFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477 Query: 292 RKFLCIKKSFCVGCH 306 R CI + Sbjct: 478 RIVDCI---IRLPVK 489 Score = 31.8 bits (72), Expect = 0.26 Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 30/128 (23%) Query: 213 FTFPY-SFSPDLLISEKGNLVALVDKNTLISNYSNP-PSFIFSQWKSA---LITPFHEAP 267 T + S LL+ +A + P F + L+ F Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-- 66 Query: 268 HVQKEDLQEKNQSS----LKEILRSMQPRKFLC---IKKSFCVGCHR------SDVIVGV 314 +V ++ L L + +L I H + + Sbjct: 67 YVSSL-VEPSKVGQFDQVLNLCLTEFE-NCYLEGNDI--------HALAAKLLQENDTTL 116 Query: 315 LKRKDMIR 322 +K K++I+ Sbjct: 117 VKTKELIK 124 Score = 29.9 bits (67), Expect = 0.99 Identities = 33/167 (19%), Positives = 49/167 (29%), Gaps = 70/167 (41%) Query: 1 MLSI--------------TKKYDPFPAETTIEGIARLSPP-----SGPAFPGLFDFNFSS 41 MLSI T + PA +E I+ ++ SGP L+ N Sbjct: 338 MLSISNLTQEQVQDYVNKTNSH--LPAGKQVE-ISLVNGAKNLVVSGPPQ-SLYGLN--L 391 Query: 42 YYKGISA-IGYFYS-IPKMIYSSESHNTWTWKKISSIKQSFLNEIRANIGT-YGS---AS 95 + A G S IP +S ++ FL + + + S Sbjct: 392 TLRKAKAPSGLDQSRIP---FS---------ERKLKFSNRFLP-----VASPFHSHLLVP 434 Query: 96 ASIFLIKHFHC-----------IPVY----G-----LIANILAIPIL 122 AS + K IPVY G L +I + Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI--SERI 479 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 36.1 bits (82), Expect = 0.014 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 77 KQSFLNEIRANIGTYGSASASIFLIK 102 KQ+ L +++A++ Y SA IK Sbjct: 19 KQA-LKKLQASLKLYADDSAPALAIK 43 Score = 32.3 bits (72), Expect = 0.22 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%) Query: 270 QKEDLQEKNQSSLKEILRSMQPRKFLCIKKSF 301 +K+ L+ K Q+SLK P L IK + Sbjct: 18 EKQALK-KLQASLKLYADDSAPA--LAIKATM 46 Score = 31.1 bits (69), Expect = 0.42 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 6/33 (18%) Query: 352 EILQK-QGSLEITIIPPSNDNDKVKFIIKSAIE 383 + L+K Q SL++ D+ IK+ +E Sbjct: 20 QALKKLQASLKLYA-----DDSAPALAIKATME 47 >2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, HIV, human immunodeficiency virus, AIDS, zinc; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Score = 29.2 bits (65), Expect = 1.8 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 32/129 (24%) Query: 270 QKEDLQEKNQSSLKEILR-----------SMQPR-------KFLCIKKSFCVGCHRSDVI 311 K +EK+ L+++ P F+C C G R Sbjct: 4 AKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTS---CSGSLR---G 57 Query: 312 VGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITIIPPSNDN 371 + R I ++ + I ++ ++C +I + IP D Sbjct: 58 LNPPHRVKSISMT-TFTQQEIEFLQKHGNEVCK-------QIWLGLFDDRSSAIPDFRDP 109 Query: 372 DKVKFIIKS 380 KVK ++ Sbjct: 110 QKVKEFLQE 118 >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Score = 28.5 bits (63), Expect = 2.8 Identities = 12/71 (16%), Positives = 21/71 (29%) Query: 222 DLLISEKGNLVALVDKNTLISNYSNPPSFIFSQWKSALITPFHEAPHVQKEDLQEKNQSS 281 L L N+S P F + +S ++ F+ +P + Sbjct: 558 KLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTRED 617 Query: 282 LKEILRSMQPR 292 L +QP Sbjct: 618 TTNSLIMIQPT 628 >2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cytoplasm, acetylation, polymorphism, cofilin-like, phosphoprotein, phosphorylation; 1.8A {Homo sapiens} Length = 135 Score = 26.8 bits (59), Expect = 9.1 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 9/57 (15%) Query: 14 ETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIP--------KMIYSS 62 T + + P F + + + ++ + YS+P +M+YSS Sbjct: 41 PTDVAQLPSRVPRDAA-RYHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSS 96 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.141 0.425 Gapped Lambda K H 0.267 0.0506 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,461,033 Number of extensions: 163316 Number of successful extensions: 571 Number of sequences better than 10.0: 1 Number of HSP's gapped: 568 Number of HSP's successfully gapped: 14 Length of query: 394 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 300 Effective length of database: 3,414,294 Effective search space: 1024288200 Effective search space used: 1024288200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.6 bits)