RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780357|ref|YP_003064770.1| hypothetical protein
CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62]
(394 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 51.5 bits (123), Expect = 3e-07
Identities = 56/435 (12%), Positives = 104/435 (23%), Gaps = 198/435 (45%)
Query: 20 IARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIYS-----SESHNTWTWKKIS 74
A+L + + +Y K S N ++
Sbjct: 105 AAKLLQENDTTLVKTKEL-IKNYITARIMAK--RPFDKKSNSALFRAVGEGNA----QLV 157
Query: 75 SI--KQ----SFLNEIRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIPILSFVVIP 128
+I Q + E+R TY L+ +++
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHV------------------LVGDLIKF--------- 190
Query: 129 AGLIAILLMILSLDNI--------PFGVMAWGLDIIIHIAHRISVAHNEFCIGRIPETSF 180
A L L + ++ W + + + ++ + IP S
Sbjct: 191 ---SAETLSELIRTTLDAEKVFTQGLNILEW-------LENPSNTPDKDYLLS-IP-ISC 238
Query: 181 VTI-VVEFL-LMVFCKTNIRHIG---SIMIGIT-----II-------------------- 210
I V++ +V K G S + G T ++
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 211 ---ILF--------TFPYSFSPDLLIS---EKGN----------------LVALVDK-NT 239
+LF +P + P ++ E + V+K N+
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 240 -----------LISNYSN-----PP---------------------SFI-FSQWKSAL-- 259
L++ N PP S I FS+ K
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 260 ----IT-PFHEAPHVQ------KEDLQEKN----QSSLK---------EILRSMQ----P 291
+ PFH + + +DL + N ++ LR +
Sbjct: 419 RFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 292 RKFLCIKKSFCVGCH 306
R CI +
Sbjct: 478 RIVDCI---IRLPVK 489
Score = 31.8 bits (72), Expect = 0.26
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 30/128 (23%)
Query: 213 FTFPY-SFSPDLLISEKGNLVALVDKNTLISNYSNP-PSFIFSQWKSA---LITPFHEAP 267
T + S LL+ +A + P F + L+ F
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-- 66
Query: 268 HVQKEDLQEKNQSS----LKEILRSMQPRKFLC---IKKSFCVGCHR------SDVIVGV 314
+V ++ L L + +L I H + +
Sbjct: 67 YVSSL-VEPSKVGQFDQVLNLCLTEFE-NCYLEGNDI--------HALAAKLLQENDTTL 116
Query: 315 LKRKDMIR 322
+K K++I+
Sbjct: 117 VKTKELIK 124
Score = 29.9 bits (67), Expect = 0.99
Identities = 33/167 (19%), Positives = 49/167 (29%), Gaps = 70/167 (41%)
Query: 1 MLSI--------------TKKYDPFPAETTIEGIARLSPP-----SGPAFPGLFDFNFSS 41
MLSI T + PA +E I+ ++ SGP L+ N
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSH--LPAGKQVE-ISLVNGAKNLVVSGPPQ-SLYGLN--L 391
Query: 42 YYKGISA-IGYFYS-IPKMIYSSESHNTWTWKKISSIKQSFLNEIRANIGT-YGS---AS 95
+ A G S IP +S ++ FL + + + S
Sbjct: 392 TLRKAKAPSGLDQSRIP---FS---------ERKLKFSNRFLP-----VASPFHSHLLVP 434
Query: 96 ASIFLIKHFHC-----------IPVY----G-----LIANILAIPIL 122
AS + K IPVY G L +I +
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI--SERI 479
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.014
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 77 KQSFLNEIRANIGTYGSASASIFLIK 102
KQ+ L +++A++ Y SA IK
Sbjct: 19 KQA-LKKLQASLKLYADDSAPALAIK 43
Score = 32.3 bits (72), Expect = 0.22
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 270 QKEDLQEKNQSSLKEILRSMQPRKFLCIKKSF 301
+K+ L+ K Q+SLK P L IK +
Sbjct: 18 EKQALK-KLQASLKLYADDSAPA--LAIKATM 46
Score = 31.1 bits (69), Expect = 0.42
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 352 EILQK-QGSLEITIIPPSNDNDKVKFIIKSAIE 383
+ L+K Q SL++ D+ IK+ +E
Sbjct: 20 QALKKLQASLKLYA-----DDSAPALAIKATME 47
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein,
REV-interacting protein, HIV, human immunodeficiency
virus, AIDS, zinc; 1.48A {Homo sapiens} PDB: 2d9l_A
Length = 140
Score = 29.2 bits (65), Expect = 1.8
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 32/129 (24%)
Query: 270 QKEDLQEKNQSSLKEILR-----------SMQPR-------KFLCIKKSFCVGCHRSDVI 311
K +EK+ L+++ P F+C C G R
Sbjct: 4 AKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTS---CSGSLR---G 57
Query: 312 VGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITIIPPSNDN 371
+ R I ++ + I ++ ++C +I + IP D
Sbjct: 58 LNPPHRVKSISMT-TFTQQEIEFLQKHGNEVCK-------QIWLGLFDDRSSAIPDFRDP 109
Query: 372 DKVKFIIKS 380
KVK ++
Sbjct: 110 QKVKEFLQE 118
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1
c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Length = 768
Score = 28.5 bits (63), Expect = 2.8
Identities = 12/71 (16%), Positives = 21/71 (29%)
Query: 222 DLLISEKGNLVALVDKNTLISNYSNPPSFIFSQWKSALITPFHEAPHVQKEDLQEKNQSS 281
L L N+S P F + +S ++ F+ +P +
Sbjct: 558 KLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTRED 617
Query: 282 LKEILRSMQPR 292
L +QP
Sbjct: 618 TTNSLIMIQPT 628
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding,
cytoplasm, acetylation, polymorphism, cofilin-like,
phosphoprotein, phosphorylation; 1.8A {Homo sapiens}
Length = 135
Score = 26.8 bits (59), Expect = 9.1
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 14 ETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIP--------KMIYSS 62
T + + P F + + + ++ + YS+P +M+YSS
Sbjct: 41 PTDVAQLPSRVPRDAA-RYHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSS 96
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.141 0.425
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,461,033
Number of extensions: 163316
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 14
Length of query: 394
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 300
Effective length of database: 3,414,294
Effective search space: 1024288200
Effective search space used: 1024288200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.6 bits)