BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780357|ref|YP_003064770.1| hypothetical protein
CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62]
         (394 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 394

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/394 (100%), Positives = 394/394 (100%)

Query: 1   MLSITKKYDPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIY 60
           MLSITKKYDPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIY
Sbjct: 1   MLSITKKYDPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIY 60

Query: 61  SSESHNTWTWKKISSIKQSFLNEIRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIP 120
           SSESHNTWTWKKISSIKQSFLNEIRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIP
Sbjct: 61  SSESHNTWTWKKISSIKQSFLNEIRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIP 120

Query: 121 ILSFVVIPAGLIAILLMILSLDNIPFGVMAWGLDIIIHIAHRISVAHNEFCIGRIPETSF 180
           ILSFVVIPAGLIAILLMILSLDNIPFGVMAWGLDIIIHIAHRISVAHNEFCIGRIPETSF
Sbjct: 121 ILSFVVIPAGLIAILLMILSLDNIPFGVMAWGLDIIIHIAHRISVAHNEFCIGRIPETSF 180

Query: 181 VTIVVEFLLMVFCKTNIRHIGSIMIGITIIILFTFPYSFSPDLLISEKGNLVALVDKNTL 240
           VTIVVEFLLMVFCKTNIRHIGSIMIGITIIILFTFPYSFSPDLLISEKGNLVALVDKNTL
Sbjct: 181 VTIVVEFLLMVFCKTNIRHIGSIMIGITIIILFTFPYSFSPDLLISEKGNLVALVDKNTL 240

Query: 241 ISNYSNPPSFIFSQWKSALITPFHEAPHVQKEDLQEKNQSSLKEILRSMQPRKFLCIKKS 300
           ISNYSNPPSFIFSQWKSALITPFHEAPHVQKEDLQEKNQSSLKEILRSMQPRKFLCIKKS
Sbjct: 241 ISNYSNPPSFIFSQWKSALITPFHEAPHVQKEDLQEKNQSSLKEILRSMQPRKFLCIKKS 300

Query: 301 FCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSL 360
           FCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSL
Sbjct: 301 FCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSL 360

Query: 361 EITIIPPSNDNDKVKFIIKSAIENLHFPWTKHRI 394
           EITIIPPSNDNDKVKFIIKSAIENLHFPWTKHRI
Sbjct: 361 EITIIPPSNDNDKVKFIIKSAIENLHFPWTKHRI 394


>gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 337

 Score = 30.0 bits (66), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 159 IAHRISVAHNEFCIGRIPETSFVTIVVEFLLMVFCKTNIRHIGSIMIGITIIILFTFP 216
           + H+I   H +F   +IP TS +T   + +L +F     RH+  I  GI++ +  T P
Sbjct: 72  LGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFN----RHLPHISCGISLDLHSTIP 125


>gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 425

 Score = 25.8 bits (55), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 193 CKTNIRHIGSIMIG----ITIIILFTFPYSFSPDLLISE---KGNLVALVDKNTLISNYS 245
            +  +  IG  ++G    + I+I  +FP   +  + + E   KG   + V  N  I+N +
Sbjct: 196 SRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQAN--INNLA 253

Query: 246 NPPSFIFSQWKSALITPFHEAPH 268
           + PS ++    SA++  F + P 
Sbjct: 254 SVPSIVYGILGSAVLINFFKMPR 276


>gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62]
          Length = 209

 Score = 24.3 bits (51), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 129 AGLIAILLMILSLDNIPFGV 148
           AG + +  +IL  +NIPFG+
Sbjct: 38  AGPVVVAAIILDPNNIPFGI 57


>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 463

 Score = 23.5 bits (49), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 300 SFCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTI 335
           SF + C     I G+  RK+ I+LS   S +L+T +
Sbjct: 382 SFTINC-----IEGIQARKENIQLSLNRSLMLVTAL 412


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.141    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,400
Number of Sequences: 1233
Number of extensions: 10883
Number of successful extensions: 53
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 11
length of query: 394
length of database: 328,796
effective HSP length: 76
effective length of query: 318
effective length of database: 235,088
effective search space: 74757984
effective search space used: 74757984
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)