BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62] (394 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62] Length = 394 Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/394 (100%), Positives = 394/394 (100%) Query: 1 MLSITKKYDPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIY 60 MLSITKKYDPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIY Sbjct: 1 MLSITKKYDPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIY 60 Query: 61 SSESHNTWTWKKISSIKQSFLNEIRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIP 120 SSESHNTWTWKKISSIKQSFLNEIRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIP Sbjct: 61 SSESHNTWTWKKISSIKQSFLNEIRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIP 120 Query: 121 ILSFVVIPAGLIAILLMILSLDNIPFGVMAWGLDIIIHIAHRISVAHNEFCIGRIPETSF 180 ILSFVVIPAGLIAILLMILSLDNIPFGVMAWGLDIIIHIAHRISVAHNEFCIGRIPETSF Sbjct: 121 ILSFVVIPAGLIAILLMILSLDNIPFGVMAWGLDIIIHIAHRISVAHNEFCIGRIPETSF 180 Query: 181 VTIVVEFLLMVFCKTNIRHIGSIMIGITIIILFTFPYSFSPDLLISEKGNLVALVDKNTL 240 VTIVVEFLLMVFCKTNIRHIGSIMIGITIIILFTFPYSFSPDLLISEKGNLVALVDKNTL Sbjct: 181 VTIVVEFLLMVFCKTNIRHIGSIMIGITIIILFTFPYSFSPDLLISEKGNLVALVDKNTL 240 Query: 241 ISNYSNPPSFIFSQWKSALITPFHEAPHVQKEDLQEKNQSSLKEILRSMQPRKFLCIKKS 300 ISNYSNPPSFIFSQWKSALITPFHEAPHVQKEDLQEKNQSSLKEILRSMQPRKFLCIKKS Sbjct: 241 ISNYSNPPSFIFSQWKSALITPFHEAPHVQKEDLQEKNQSSLKEILRSMQPRKFLCIKKS 300 Query: 301 FCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSL 360 FCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSL Sbjct: 301 FCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSL 360 Query: 361 EITIIPPSNDNDKVKFIIKSAIENLHFPWTKHRI 394 EITIIPPSNDNDKVKFIIKSAIENLHFPWTKHRI Sbjct: 361 EITIIPPSNDNDKVKFIIKSAIENLHFPWTKHRI 394 >gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 30.0 bits (66), Expect = 0.077, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 159 IAHRISVAHNEFCIGRIPETSFVTIVVEFLLMVFCKTNIRHIGSIMIGITIIILFTFP 216 + H+I H +F +IP TS +T + +L +F RH+ I GI++ + T P Sbjct: 72 LGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFN----RHLPHISCGISLDLHSTIP 125 >gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62] Length = 425 Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 9/83 (10%) Query: 193 CKTNIRHIGSIMIG----ITIIILFTFPYSFSPDLLISE---KGNLVALVDKNTLISNYS 245 + + IG ++G + I+I +FP + + + E KG + V N I+N + Sbjct: 196 SRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQAN--INNLA 253 Query: 246 NPPSFIFSQWKSALITPFHEAPH 268 + PS ++ SA++ F + P Sbjct: 254 SVPSIVYGILGSAVLINFFKMPR 276 >gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] Length = 209 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 129 AGLIAILLMILSLDNIPFGV 148 AG + + +IL +NIPFG+ Sbjct: 38 AGPVVVAAIILDPNNIPFGI 57 >gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 463 Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%) Query: 300 SFCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTI 335 SF + C I G+ RK+ I+LS S +L+T + Sbjct: 382 SFTINC-----IEGIQARKENIQLSLNRSLMLVTAL 412 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.325 0.141 0.425 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 258,400 Number of Sequences: 1233 Number of extensions: 10883 Number of successful extensions: 53 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 11 length of query: 394 length of database: 328,796 effective HSP length: 76 effective length of query: 318 effective length of database: 235,088 effective search space: 74757984 effective search space used: 74757984 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 39 (19.6 bits)