HHsearch alignment for GI: 254780359 and conserved domain: TIGR00644
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=93.05 E-value=0.24 Score=29.66 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHH--HHHHHHHCC-CCEEEECCHHHHHHHHCCCCCCC
Q ss_conf 779566999999996898299996778988701334844599999--999997089-94586146899987403643244
Q gi|254780359|r 6 SLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEK--MAFIIRHTC-GIVCTPMPFHTAHKLKLNPMVLE 82 (210)
Q Consensus 6 ~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~--i~fm~~~~~-Glic~al~~~~~~~L~Lp~m~~~ 82 (210)
T Consensus 40 dm-~kAv~ri~~A~~~~eki~i~GDyD----------vDGiTSt~~l~~~L~~lGp~~~~~~~IPnR~~egYG~~~~~~~ 108 (705)
T TIGR00644 40 DM-EKAVERIIEAIENNEKILIFGDYD----------VDGITSTAILVEFLRELGPYVQVDYYIPNRFTEGYGLSPEALR 108 (705)
T ss_pred CH-HHHHHHHHHHHHCCCCEEEEECCC----------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 36-899999999997289389996175----------2268999999999995099732466626635777788989999
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5665665217887203477789998899999999984
Q gi|254780359|r 83 NESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLAN 119 (210)
Q Consensus 83 n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~ 119 (210)
T Consensus 109 ~~~~~G~~LiiTVD------~Gi~a~~e~~~a~~~G~ 139 (705)
T TIGR00644 109 ELKENGVSLIITVD------NGISAHEEIEYAKELGI 139 (705)
T ss_pred HHHHCCCEEEEECC------CCHHHHHHHHHHHHCCC
T ss_conf 99866983999826------87426999999986698