Query gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs 114 out of 1786
Neff 5.2
Searched_HMMs 33803
Date Wed Jun 1 12:23:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780359.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1snn_A DHBP synthase, 3,4-dih 100.0 0 0 531.2 20.9 201 9-210 1-225 (227)
2 >1g57_A DHBP synthase, 3,4-dih 100.0 0 0 526.6 21.0 206 4-209 8-213 (217)
3 >1k4i_A 3,4-dihydroxy-2-butano 100.0 0 0 522.6 18.8 202 8-209 11-224 (233)
4 >1tks_A 3,4-dihydroxy-2-butano 100.0 0 0 512.8 19.9 200 8-207 4-204 (204)
5 >2z67_A O-phosphoseryl-tRNA(SE 68.1 9.7 0.00029 19.2 5.6 49 149-197 172-220 (314)
6 >1ko7_A HPR kinase/phosphatase 62.3 7.6 0.00022 19.9 3.1 71 124-199 41-111 (129)
7 >2dkj_A Serine hydroxymethyltr 62.1 7.8 0.00023 19.8 3.2 45 153-197 120-164 (244)
8 >1y0n_A Hypothetical UPF0270 p 61.2 13 0.00039 18.4 5.1 39 4-46 33-71 (78)
9 >3gyb_A Transcriptional regula 58.7 14 0.00043 18.1 6.5 125 9-150 20-147 (151)
10 >2fnu_A Aminotransferase; prot 58.5 15 0.00043 18.1 4.5 60 10-69 26-97 (238)
11 >3ecd_A Serine hydroxymethyltr 56.6 12 0.00037 18.5 3.4 42 156-197 123-164 (243)
12 >1gc0_A Methionine gamma-lyase 56.5 15 0.00043 18.1 3.8 42 156-197 144-185 (260)
13 >1b9h_A AHBA synthase, protein 52.8 15 0.00044 18.0 3.3 35 162-196 123-157 (250)
14 >3frk_A QDTB; aminotransferase 52.4 18 0.00054 17.5 5.0 19 11-29 33-51 (237)
15 >2rgy_A Transcriptional regula 50.8 13 0.00038 18.4 2.7 95 9-120 23-125 (132)
16 >2vyc_A Biodegradative arginin 50.7 13 0.00038 18.4 2.7 48 151-198 157-208 (301)
17 >1c4k_A Protein (ornithine dec 48.3 21 0.00063 17.1 4.1 45 153-197 162-207 (306)
18 >1mdo_A ARNB aminotransferase; 47.3 19 0.00055 17.4 3.1 57 10-66 26-92 (243)
19 >2po3_A 4-dehydrase; external 46.6 23 0.00067 16.9 4.4 23 173-195 119-141 (233)
20 >3dr4_A Putative perosamine sy 46.3 23 0.00067 16.9 3.7 39 159-197 138-176 (267)
21 >2cb1_A O-acetyl homoserine su 46.2 23 0.00068 16.8 4.3 39 158-196 136-174 (277)
22 >2vi8_A Serine hydroxymethyltr 45.9 21 0.00062 17.1 3.2 43 155-197 122-164 (243)
23 >1o69_A Aminotransferase; stru 45.6 23 0.00067 16.9 3.3 18 46-63 107-124 (394)
24 >1w96_A ACC, acetyl-coenzyme A 43.4 19 0.00056 17.3 2.7 17 180-196 6-22 (66)
25 >3jsz_A LGT1, putative unchara 41.2 14 0.00041 18.2 1.7 12 43-54 65-76 (303)
26 >3iuu_A MLRC-like, putative me 40.3 22 0.00066 16.9 2.6 47 9-60 3-50 (197)
27 >1n8p_A Cystathionine gamma-ly 39.0 29 0.00087 16.2 4.0 70 126-196 100-172 (251)
28 >1cs1_A CGS, protein (cystathi 38.1 30 0.0009 16.1 4.7 42 156-197 130-172 (246)
29 >3a2b_A Serine palmitoyltransf 35.7 33 0.00098 15.8 4.7 31 166-196 97-127 (191)
30 >3k28_A Glutamate-1-semialdehy 35.6 33 0.00099 15.8 4.0 62 136-197 66-132 (186)
31 >1ibj_A CBL, cystathionine bet 34.0 35 0.001 15.7 4.8 47 151-197 205-252 (326)
32 >2jya_A AGR_C_3324P, uncharact 32.4 35 0.001 15.7 2.6 19 180-198 60-78 (106)
33 >2a7v_A Serine hydroxymethyltr 32.2 38 0.0011 15.5 3.2 36 162-197 138-173 (266)
34 >2vpq_A Acetyl-COA carboxylase 32.2 38 0.0011 15.5 3.1 16 180-195 7-22 (70)
35 >2uvp_A HOBA; hypothetical pro 31.1 38 0.0011 15.5 2.6 25 11-35 9-33 (153)
36 >3g7u_A Cytosine-specific meth 30.4 6.5 0.00019 20.3 -1.4 26 108-133 27-52 (63)
37 >1a9x_A Carbamoyl phosphate sy 29.2 41 0.0012 15.2 2.5 15 181-195 10-24 (68)
38 >3b8x_A WBDK, pyridoxamine 5-p 28.7 43 0.0013 15.1 3.7 61 9-69 36-112 (390)
39 >2oga_A Transaminase; PLP-depe 28.1 44 0.0013 15.0 3.6 25 172-196 120-144 (233)
40 >2bbw_A Adenylate kinase 4, AK 28.1 44 0.0013 15.0 4.6 33 171-204 32-64 (182)
41 >1knx_A Probable HPR(Ser) kina 27.8 35 0.001 15.7 2.0 65 128-197 48-112 (119)
42 >3hvy_A Cystathionine beta-lya 27.6 45 0.0013 15.0 3.8 43 155-197 103-150 (215)
43 >1bs0_A Protein (8-amino-7-oxo 27.6 45 0.0013 15.0 5.1 30 167-196 97-126 (187)
44 >3gmt_A Adenylate kinase; ssgc 27.4 46 0.0014 15.0 4.6 32 171-203 13-44 (149)
45 >2a8j_A Taspase 1, threonine a 27.4 27 0.0008 16.4 1.3 27 177-203 163-189 (420)
46 >2wqd_A Phosphoenolpyruvate-pr 27.0 19 0.00058 17.3 0.5 79 37-115 36-123 (140)
47 >2gez_A L-asparaginase alpha s 26.9 28 0.00083 16.3 1.3 24 174-197 46-69 (69)
48 >3c19_A Uncharacterized protei 26.7 40 0.0012 15.3 2.1 29 179-207 50-80 (101)
49 >1v72_A Aldolase; PLP-dependen 26.4 48 0.0014 14.8 3.2 51 147-197 123-178 (259)
50 >1y88_A Hypothetical protein A 26.3 40 0.0012 15.3 2.0 18 146-163 102-119 (144)
51 >2cob_A LCOR protein; MLR2, KI 25.9 49 0.0014 14.8 3.0 21 4-24 11-31 (70)
52 >2w7t_A CTP synthetase, putati 25.6 36 0.0011 15.6 1.7 40 158-197 61-101 (180)
53 >3h7f_A Serine hydroxymethyltr 25.6 49 0.0015 14.8 4.4 90 108-197 64-164 (242)
54 >3hqs_A CAI-1 autoinducer synt 25.4 50 0.0015 14.7 4.1 55 143-197 166-221 (409)
55 >1rv3_A Serine hydroxymethyltr 25.1 50 0.0015 14.7 4.0 39 158-196 134-172 (266)
56 >1k2x_A Putative L-asparaginas 24.4 27 0.00081 16.4 0.9 23 175-197 46-68 (68)
57 >1uc8_A LYSX, lysine biosynthe 23.9 53 0.0016 14.6 2.5 15 181-195 10-24 (72)
58 >1m22_A Peptide amidase, PAM; 23.7 54 0.0016 14.5 3.2 27 182-208 17-43 (83)
59 >1zym_A Enzyme I; phosphotrans 22.4 51 0.0015 14.7 1.9 77 36-112 32-117 (137)
60 >3e6g_A Xometc, cystathionine 22.2 57 0.0017 14.3 3.7 33 165-197 154-187 (262)
61 >1qz9_A Kynureninase; kynureni 22.1 58 0.0017 14.3 5.4 43 155-197 95-138 (210)
62 >1ulz_A Pyruvate carboxylase N 21.5 59 0.0017 14.3 3.1 12 70-81 14-25 (71)
63 >2yrx_A Phosphoribosylglycinam 21.5 59 0.0018 14.3 2.6 10 71-80 17-26 (72)
64 >2w8t_A SPT, serine palmitoylt 21.4 59 0.0018 14.2 4.2 23 47-69 35-57 (164)
65 >2hwg_A Phosphoenolpyruvate-pr 21.3 39 0.0012 15.4 1.2 82 36-117 32-122 (136)
66 >1tif_A IF3-N, translation ini 21.2 60 0.0018 14.2 2.9 31 169-199 16-49 (78)
67 >3gbx_A Serine hydroxymethyltr 20.5 62 0.0018 14.1 4.0 36 161-196 127-162 (245)
68 >3bb8_A CDP-4-keto-6-deoxy-D-g 20.4 62 0.0018 14.1 4.7 59 10-68 65-141 (437)
No 1
>>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} (A:)
Probab=100.00 E-value=0 Score=531.19 Aligned_cols=201 Identities=31% Similarity=0.554 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCC-------
Q ss_conf 5669999999968982999967789887013348445999999999970899458614689998740364324-------
Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVL------- 81 (210)
Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~------- 81 (210)
+++|++||++||+|+||||+|+++||||||||++|+++||++|+||++|++|+||+++++++|++|+||+|+.
T Consensus 1 ~~~ie~ai~al~~G~~Viv~D~~~RE~Egdlv~~Ae~~T~e~i~fm~~~a~GliC~a~~~~~a~~L~Lp~m~~~~~~~~~ 80 (227)
T 1snn_A 1 MNNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQ 80 (227)
T ss_dssp -CHHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHTEEEEEEEECHHHHHHHTCCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 96399999999879979998589987651489885659999999999957998774589999987699511230000111
Q ss_pred -----------CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH------HHCCHHHHCCCCCCCEEEECCCCCC
Q ss_conf -----------45665665217887203477789998899999999984------2013243138985001001269824
Q gi|254780359|r 82 -----------ENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLAN------PHSIADNFVRPGHIFPLISRDGGVL 144 (210)
Q Consensus 82 -----------~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~------~~~~~~df~~PGHV~pL~a~~gGvl 144 (210)
.|+..++++|||||||+ +++|||||+|||+|||.|++ ++++|+||++|||||||++++|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~t~FtvsVd~~-~~~TGISa~DRa~Tir~la~~~~~~~~~~~~~df~~PGHV~pL~a~~gGvl 159 (227)
T 1snn_A 81 KFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVK 159 (227)
T ss_dssp TCHHHHHTCCTTCTTSSSCCEEEEEEET-TCSSSCSHHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEEEEECCTTGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEECCCEEECCCCC
T ss_conf 2332123445677666774169987046-776897606788899998731122486545344058860135035037734
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCC
Q ss_conf 667802677699887699600598885368875059899999999838907779999999984379
Q gi|254780359|r 145 VRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 (210)
Q Consensus 145 ~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~ei 210 (210)
+|+||||||||||+||||+|++|||||||++|+||+++++++||++|+||+++|+|||+||+++|+
T Consensus 160 ~R~GhTEasvdL~~lAGl~p~~vi~eil~~~G~~~~~~~~~~fA~~h~l~~isi~dli~yr~~~e~ 225 (227)
T 1snn_A 160 NRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLDKYL 225 (227)
T ss_dssp TCCSHHHHHHHHHHHTTSCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEEHHHHHHHC-----
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
T ss_conf 666378899999974699744999999679987458899999999849978989999999998761
No 2
>>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} (A:)
Probab=100.00 E-value=0 Score=526.59 Aligned_cols=206 Identities=39% Similarity=0.689 Sum_probs=202.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCC
Q ss_conf 75779566999999996898299996778988701334844599999999997089945861468999874036432445
Q gi|254780359|r 4 KKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLEN 83 (210)
Q Consensus 4 ~~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n 83 (210)
..++.+++|++||++||+|+||||+|+++||||||||++||++|+++|+||++|++|+||+++++++|++|+||+|+..|
T Consensus 8 ~~~~~~~~v~~ai~alr~G~~Viv~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~a~~~~~a~~L~Lp~m~~~~ 87 (217)
T 1g57_A 8 SFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENN 87 (217)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSC
T ss_pred HCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCC
T ss_conf 51694236999999998899799986899876505898856599999999998189819980689999555985745455
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 66566521788720347778999889999999998420132431389850010012698246678026776998876996
Q gi|254780359|r 84 ESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLP 163 (210)
Q Consensus 84 ~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~ 163 (210)
++.++++|||||||++|++|||||+||++|||.|+|++++++||++|||||||++++|||++|+|||||+||||+||||.
T Consensus 88 ~~~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~lad~~~~~~df~~PGHv~pL~a~~gGvl~R~GhtEaavdLa~lAGl~ 167 (217)
T 1g57_A 88 TSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFK 167 (217)
T ss_dssp CCTTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSC
T ss_pred CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 66777754566651567568868889999999985668886761699810731004688546785788988799874999
Q ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 0059888536887505989999999983890777999999998437
Q gi|254780359|r 164 PIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 164 P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
|++|||||++++|+||+.+++++||++|+||+++|+|||+||+++|
T Consensus 168 P~avi~eil~~dG~~~~~~~~~~fA~~h~l~~i~i~dli~yr~~~e 213 (217)
T 1g57_A 168 PAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE 213 (217)
T ss_dssp SCEEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHC
T ss_conf 7499999876988715889999999984997998999999999716
No 3
>>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} (A:)
Probab=100.00 E-value=0 Score=522.62 Aligned_cols=202 Identities=45% Similarity=0.775 Sum_probs=197.8
Q ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 95669999999968982999967789887013348445999999999970899458614689998740364324456656
Q gi|254780359|r 8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVH 87 (210)
Q Consensus 8 ~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~ 87 (210)
.+++|++||++||+|+||||+||++||||||||++||++|+++|+||++|++|+||+++++++|++|+||+|+..|++.+
T Consensus 11 ~~~~i~~ai~al~~G~~Viv~Dd~~rE~egdlv~aAe~~T~e~i~fm~~~~~Glic~ai~~~~~~~L~Lp~m~~~n~~~~ 90 (233)
T 1k4i_A 11 NFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTHNADPR 90 (233)
T ss_dssp -CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSCCCSS
T ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCCCCCC
T ss_conf 38659999999988996999967998875058978676999999999985898689975788872468855334677756
Q ss_pred CCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 65217887203-47778999889999999998420132431389850010012698246678026776998876996005
Q gi|254780359|r 88 KTAFTVSVDSK-HGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIA 166 (210)
Q Consensus 88 ~taFtvsvd~~-~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~ 166 (210)
+++||+|||++ .+++|||||+|||+|||+|++++++++||++|||||||++++|||++|+|||||+||||+|||++|++
T Consensus 91 ~t~ftvsvda~~~g~~TGISa~DRa~Tir~Lad~~~~~~df~~PGHv~pL~a~~gGvl~R~GhtEaavdLarlAGl~P~a 170 (233)
T 1k4i_A 91 GTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVA 170 (233)
T ss_dssp CCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTCCSBE
T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 67752147730577667878999999999862888886661699764225643798367897889999999982999718
Q ss_pred EEEEEECCCCC-----------CCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 98885368875-----------05989999999983890777999999998437
Q gi|254780359|r 167 VICELVNDDGT-----------IKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 167 vi~Eil~~~G~-----------~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
||||||+++|+ ||+++++++||++|+||+++|+|||+||+++|
T Consensus 171 vicEil~~dG~~~~~~~~~~~~ma~~~~~~~fA~~h~l~~i~i~dli~yr~~~e 224 (233)
T 1k4i_A 171 VISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTE 224 (233)
T ss_dssp EEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf 999994089865543333431234549999999980996898999999998523
No 4
>>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} (A:)
Probab=100.00 E-value=0 Score=512.79 Aligned_cols=200 Identities=45% Similarity=0.745 Sum_probs=196.4
Q ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 95669999999968982999967789887013348445999999999970899458614689998740364324456656
Q gi|254780359|r 8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVH 87 (210)
Q Consensus 8 ~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~ 87 (210)
.+++|++||++||+|+||||+|+++||||||||++||++|+++|+||++|++|+||+|+++++|++|+||+|+..|.+.+
T Consensus 4 ~~~~i~~ai~alr~G~~Viv~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~ai~~~~a~~L~Lp~m~~~~~~~~ 83 (204)
T 1tks_A 4 IFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRSDRH 83 (204)
T ss_dssp CSCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC------
T ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCCCC
T ss_conf 52439999999988996999968998774068989798899999999984588758845899986750786556666777
Q ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 65217887203477789998899999999984201324313898500100126982466780267769988769960059
Q gi|254780359|r 88 KTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV 167 (210)
Q Consensus 88 ~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~v 167 (210)
+++|+|||||+.|++|||||+||++|||.|+|++++++||++|||||||++++|||++|+|||||+||||+||||+|++|
T Consensus 84 ~t~ftvsvda~~g~~TGISa~DRa~Tir~lad~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdL~~lAgl~P~av 163 (204)
T 1tks_A 84 GTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGV 163 (204)
T ss_dssp CCCBBCCEEESTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSBEE
T ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 77511000024688877359999999998737899877850454311146525781457658999999998279987079
Q ss_pred EEEEEC-CCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHH
Q ss_conf 888536-8875059899999999838907779999999984
Q gi|254780359|r 168 ICELVN-DDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKK 207 (210)
Q Consensus 168 i~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~ 207 (210)
|||||+ ++|+|++.+++++||++|+||+++|+|||+||++
T Consensus 164 i~eil~d~dG~~~~~~~~~~fA~~h~l~~i~i~dli~yr~~ 204 (204)
T 1tks_A 164 ICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK 204 (204)
T ss_dssp EEEBBCTTTCCBCBHHHHHHHHHHHTCCEEEHHHHHHHHCC
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHC
T ss_conf 99998889987648999999999839969989999999849
No 5
>>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, pyridoxal-5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis S2} (A:47-360)
Probab=68.14 E-value=9.7 Score=19.18 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 0267769988769960059888536887505989999999983890777
Q gi|254780359|r 149 HTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 149 HTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
.-|..++-..-++..+..+++-.-+..|...+.+++.+++++||++++-
T Consensus 172 ~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~I~~l~~~~gi~liv 220 (314)
T 2z67_A 172 DIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHII 220 (314)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCEECCHHHHHHHHHHCCCEEEE
T ss_conf 9999998560338659999714878996301499999999981985999
No 6
>>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} (A:1-129)
Probab=62.35 E-value=7.6 Score=19.86 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=49.9
Q ss_pred HHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHH
Q ss_conf 2431389850010012698246678026776998876996005988853688750598999999998389077799
Q gi|254780359|r 124 ADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQ 199 (210)
Q Consensus 124 ~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~ 199 (210)
.-+|.+||-+...-.++-+.+..-...+..--+.++....+++++.- +....-+++.++|+++++|+++..
T Consensus 41 ~~~~~~~~~i~i~g~~e~~~l~~l~~~~~~~~~~~~~~~~~~~iiit-----~~~~~~~~i~~~a~~~~iPil~t~ 111 (129)
T 1ko7_A 41 YFSHYASDRIQLLGTTELSFYNLLPDEERKGRMRKLCRPETPAIIVT-----RDLEPPEELIEAAKEHETPLITSK 111 (129)
T ss_dssp CCTTCCTTSEEEECHHHHHHHHHSCHHHHTTHHHHHCCTTCCCEEEC-----TTCCCCHHHHHHHHHTTCCEEECC
T ss_pred CCCCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHCCEEEECC
T ss_conf 66566898799985899999986899999999999736799889997-----999998999999998198399848
No 7
>>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8} (A:33-276)
Probab=62.13 E-value=7.8 Score=19.76 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=36.4
Q ss_pred HHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 769988769960059888536887505989999999983890777
Q gi|254780359|r 153 SVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 153 avdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
.-+|.+...=.+..|++...+..|...+.+++.++|++||++++-
T Consensus 120 ~~~l~~~i~~~t~~v~~~~~~~~G~~~~i~~i~~la~~~g~~l~v 164 (244)
T 2dkj_A 120 LEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVV 164 (244)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEC
T ss_conf 999999998639998982554565555789999876311857871
No 8
>>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein structure initiative, PSI; 2.00A {Pseudomonas aeruginosa PAO1} (A:)
Probab=61.19 E-value=13 Score=18.37 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHC
Q ss_conf 7577956699999999689829999677898870133484459
Q gi|254780359|r 4 KKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHC 46 (210)
Q Consensus 4 ~~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~v 46 (210)
+.++ ...|+++..+|++|+.||+||... |.-=+.+.+..
T Consensus 33 E~sl-~~kv~qv~~qL~~G~aviv~se~~---Es~~I~~k~~~ 71 (78)
T 1y0n_A 33 ETPL-DVRVERARHALRRGEAVILFDPES---QQCQLMLRSEV 71 (78)
T ss_dssp -CCH-HHHHHHHHHHHHTTSEEEEECTTT---CCEEEEEGGGS
T ss_pred HCCH-HHHHHHHHHHHHCCCEEEEECCCC---CEEEEEEHHHH
T ss_conf 4129-999999999998699899987988---74741659983
No 9
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:1-101,A:231-280)
Probab=58.70 E-value=14 Score=18.10 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=75.8
Q ss_pred HHHHHHHHHHH--HCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCH-HHHHHHHCCCCCCCCCC
Q ss_conf 56699999999--6898299996778988701334844599999999997089945861468-99987403643244566
Q gi|254780359|r 9 ERYIEDVIQSF--QKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPF-HTAHKLKLNPMVLENES 85 (210)
Q Consensus 9 ~~~ie~ai~al--~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~-~~~~~L~Lp~m~~~n~~ 85 (210)
+..+-+.|+.. +.|.-+++++..+.+.|-+.+ -.++.+...|+|..+... +.+.+.++|..+.....
T Consensus 20 ~~~li~gI~~aa~~~Gy~vii~~s~~~~~e~~~i----------~~ll~~~VDGIIi~~~~~~~~L~~~~IPiV~Idr~~ 89 (151)
T 3gyb_A 20 FIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPI----------TSALSXRPDGIIIAQDIPDFTVPDSLPPFVIAGTRI 89 (151)
T ss_dssp GHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHH----------HHHHTTCCSEEEEESCC--------CCCEEEESCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH----------HHHHHHCCCEEEECCCCHHHHHHCCCCCEEEECCCC
T ss_conf 9999999999999869989999689998999999----------999971985355125301266641478626523446
Q ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHH
Q ss_conf 56652178872034777899988999999999842013243138985001001269824667802
Q gi|254780359|r 86 VHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHT 150 (210)
Q Consensus 86 ~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHT 150 (210)
......+|..|..-| .|.. -|.-.-..-+|++.--+... -+.|-....|-...|.||-
T Consensus 90 ~~~~~~~V~~DN~~~--~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 147 (151)
T 3gyb_A 90 TQASTHDSVANDSIG--VGYN---AALLLLSXLDPEAPHPEIXH--TLQPSLIERGTCAPREGHH 147 (151)
T ss_dssp SSSCSTTEEEECHHH--HHHH---HHHHHHHHHCTTSCCCCCCS--EECCEEECCSSCCCC----
T ss_pred CCCCCCCCCCHHHHH--HHHH---HHHHHHHHHCCCCCCCCEEE--EECCEEEECCCCCCCCCCC
T ss_conf 887665532114999--9999---99999999639999984489--9675899447899999988
No 10
>>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} (A:10-247)
Probab=58.47 E-value=15 Score=18.07 Aligned_cols=60 Identities=7% Similarity=0.076 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC------------CCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 66999999996898299996778------------9887013348445999999999970899458614689
Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDADD------------RENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH 69 (210)
Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~d------------REnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~ 69 (210)
..+++.+..+-.++.++++-+-- .-++||.|+.-...-+.....+..++...+.+.....
T Consensus 26 ~~l~~~la~~~~~~~~v~~~sgt~a~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 97 (238)
T 2fnu_A 26 LLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKND 97 (238)
T ss_dssp HHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT
T ss_pred HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 999999999978195999816899999999985545799770521134432120000036874222433333
No 11
>>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, cytoplasm, one-carbon metabolism, pyridoxal phosphate; 1.60A {Burkholderia pseudomallei} (A:42-284)
Probab=56.56 E-value=12 Score=18.52 Aligned_cols=42 Identities=5% Similarity=-0.074 Sum_probs=34.1
Q ss_pred HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 988769960059888536887505989999999983890777
Q gi|254780359|r 156 LCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 156 L~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
|.+.-.-....|+..-.+..|...+.+++.++|++||++++-
T Consensus 123 l~~~i~~~t~~v~~~~~s~~g~~~~l~~i~~la~~~g~~~~v 164 (243)
T 3ecd_A 123 VEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMV 164 (243)
T ss_dssp HHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEEC
T ss_conf 999999738776874453455546689998765432330421
No 12
>>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} (A:1-260)
Probab=56.46 E-value=15 Score=18.05 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=31.6
Q ss_pred HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 988769960059888536887505989999999983890777
Q gi|254780359|r 156 LCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 156 L~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
+..+..-++..+++.+-+..|.....+++.++|++||++++-
T Consensus 144 ~~~~~~~~~~v~v~~~~~~~G~~~~l~~i~~la~~~g~~l~v 185 (260)
T 1gc0_A 144 EAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185 (260)
T ss_dssp HHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEE
T ss_pred HHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 986587761899946788665655769999999981992884
No 13
>>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} (A:1-250)
Probab=52.79 E-value=15 Score=17.99 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=19.7
Q ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 96005988853688750598999999998389077
Q gi|254780359|r 162 LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 162 l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
..+..+++...+..|...+.+++.++|++|++++|
T Consensus 123 ~~~~~~~~~p~~~~g~~~~l~~i~~~a~~~~~~li 157 (250)
T 1b9h_A 123 VTPRTKVIMPVHMAGLMADMDALAKISADTGVPLL 157 (250)
T ss_dssp CCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBC
T ss_pred CCCCCCCCEEEECCCCCCCCCCCHHHCHHHCHHHC
T ss_conf 12332011000011113443100000000000000
No 14
>>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} (A:8-244)
Probab=52.43 E-value=18 Score=17.46 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=8.8
Q ss_pred HHHHHHHHHHCCCEEEEEE
Q ss_conf 6999999996898299996
Q gi|254780359|r 11 YIEDVIQSFQKGEMVIVTD 29 (210)
Q Consensus 11 ~ie~ai~al~~G~~Viv~D 29 (210)
.+++++..+-..+-++++-
T Consensus 33 ~l~~~la~~~~~~~~i~~~ 51 (237)
T 3frk_A 33 KFEQEFADYCNVNYCIGCG 51 (237)
T ss_dssp HHHHHHHHHHTSSEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEC
T ss_conf 9999999986959799956
No 15
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:1-110,A:244-265)
Probab=50.82 E-value=13 Score=18.45 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=47.8
Q ss_pred HHHHHHHH-HHH-HCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHH-HHHHHCCCCEEEEC--CHHH---HHHHHCCCCC
Q ss_conf 56699999-999-689829999677898870133484459999999-99970899458614--6899---9874036432
Q gi|254780359|r 9 ERYIEDVI-QSF-QKGEMVIVTDADDRENEADLVLAAIHCTSEKMA-FIIRHTCGIVCTPM--PFHT---AHKLKLNPMV 80 (210)
Q Consensus 9 ~~~ie~ai-~al-~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~-fm~~~~~Glic~al--~~~~---~~~L~Lp~m~ 80 (210)
+..+-+.+ +++ +.|--+++....+.+.... --.+.+. +..+...|+|..+. +... +.+-++|...
T Consensus 23 ~~~ii~gi~~~a~~~gy~lii~~~~~~~~~~~-------~~~~~i~~l~~~~vDGiIi~~~~~~~~~i~~l~~~~IPvV~ 95 (132)
T 2rgy_A 23 YGTILKQTDLELRAVHRHVVVATGCGESTPRE-------QALEAVRFLIGRDCDGVVVISHDLHDEDLDELHRXHPKXVF 95 (132)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCSSSCHHH-------HHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCHH-------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 99999999999998699799996889864199-------99999999985699989852232104789987403764203
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4456656652178872034777899988999999999842
Q gi|254780359|r 81 LENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANP 120 (210)
Q Consensus 81 ~~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~ 120 (210)
.... ......+|.+|..+- | -..+|.|.+.
T Consensus 96 id~~-~~~~~~~V~~D~~~~-~--------~~~~~~~~~~ 125 (132)
T 2rgy_A 96 LNRA-FDALPDASFCPTAEL-T--------QNAVRWLINQ 125 (132)
T ss_dssp ESSC-CTTSGGGEECCHHHH-H--------HHHHHHHHHH
T ss_pred EEEC-CCCCCCCCCCCHHHH-H--------HHHHHHHHHH
T ss_conf 5203-432234420359999-9--------9999999998
No 16
>>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli} (A:140-440)
Probab=50.70 E-value=13 Score=18.39 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHHHHHHCC----CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEH
Q ss_conf 67769988769----9600598885368875059899999999838907779
Q gi|254780359|r 151 EASVDLCKITG----LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISV 198 (210)
Q Consensus 151 EaavdL~~lAG----l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i 198 (210)
|..++..+.+. -+++.++|-.-+..|..++.+++.++|++|++.++.-
T Consensus 157 e~~l~~~~~~~~~~~~~~~~~~~~p~np~G~~~~~~~i~~ia~~~~~~~i~D 208 (301)
T 2vyc_A 157 QKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFD 208 (301)
T ss_dssp HHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEE
T ss_pred HHHHHHCHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 9998759243553347870899968877862148999999997639939994
No 17
>>1c4k_A Protein (ornithine decarboxylase); HET: PLP GTP; 2.70A {Lactobacillus SP} (A:109-414)
Probab=48.33 E-value=21 Score=17.06 Aligned_cols=45 Identities=20% Similarity=0.059 Sum_probs=34.1
Q ss_pred HHHHHHHCCCCCEEEEEEE-ECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 7699887699600598885-36887505989999999983890777
Q gi|254780359|r 153 SVDLCKITGLPPIAVICEL-VNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 153 avdL~~lAGl~P~~vi~Ei-l~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
..++.++..-.+..++++- -+..|.....+++.++|++|+++++.
T Consensus 162 ~~~~~~~~~~~t~~i~~~~~~~~~G~~~~l~~i~~la~~~~~~~i~ 207 (306)
T 1c4k_A 162 KVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEF 207 (306)
T ss_dssp TSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEE
T ss_pred CCCHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 1487666224885289996688876635999999999752998999
No 18
>>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} (A:17-259)
Probab=47.33 E-value=19 Score=17.40 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCEEEEEECC----------CCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEC
Q ss_conf 6699999999689829999677----------89887013348445999999999970899458614
Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDAD----------DRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPM 66 (210)
Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~----------dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al 66 (210)
..+++.+.++-.++-.+++-+- -.-..||.|+.-.-.-+.....+...+.-.+.+.+
T Consensus 26 ~~l~~~~~~~~g~e~~i~~~sGt~a~~~~~~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~g~~~v~~~~ 92 (243)
T 1mdo_A 26 QELEAAFCRLTGNQYAVAVSSATAGXHIALXALGIGEGDEVITPSXTWVSTLNXIVLLGANPVXVDV 92 (243)
T ss_dssp HHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCEEHHHHHHHHHCCCEEEEECC
T ss_conf 9999999999782959996788999999999819999898957996403310365335988899414
No 19
>>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} (A:28-260)
Probab=46.57 E-value=23 Score=16.88 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=8.4
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 68875059899999999838907
Q gi|254780359|r 173 NDDGTIKKGKQVIEFSKKYDLKI 195 (210)
Q Consensus 173 ~~~G~~~~~~~~~~fA~~~~lp~ 195 (210)
+..|.+...+++.++|++||+++
T Consensus 119 ~~~g~~~~~~~i~~~a~~~g~~l 141 (233)
T 2po3_A 119 HLWGRPCAADQLRKVADEHGLRL 141 (233)
T ss_dssp CGGGCCCCHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 35686533330011221157240
No 20
>>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* (A:1-267)
Probab=46.34 E-value=23 Score=16.86 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=24.5
Q ss_pred HCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 769960059888536887505989999999983890777
Q gi|254780359|r 159 ITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 159 lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
.....+..+++-.-+..|...+.+++.+++++||++++.
T Consensus 138 ~~~~~~~~~~~~~~np~g~~~~~~~i~~~~~~~g~~iiv 176 (267)
T 3dr4_A 138 EALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIE 176 (267)
T ss_dssp GGGCCTTEEEECCBCGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCCCCEEEEECCCCCHHCHHHHHHHHHHCCCEEEE
T ss_conf 984589981999979877710799999999984999999
No 21
>>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} (A:1-277)
Probab=46.18 E-value=23 Score=16.85 Aligned_cols=39 Identities=3% Similarity=0.097 Sum_probs=20.3
Q ss_pred HHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 876996005988853688750598999999998389077
Q gi|254780359|r 158 KITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 158 ~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
++..-++..+++-.-+..|.+...+++.++|++||++++
T Consensus 136 ~i~~~t~~i~i~~~~~~~g~~~di~~i~~~a~~~g~~li 174 (277)
T 2cb1_A 136 ALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALV 174 (277)
T ss_dssp HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 754486399998788644444418888777776055514
No 22
>>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* 2vmr_A* 2vms_A* 2vmt_A* 2vmu_A* 2vmq_A* ... (A:33-275)
Probab=45.85 E-value=21 Score=17.09 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=34.7
Q ss_pred HHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9988769960059888536887505989999999983890777
Q gi|254780359|r 155 DLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 155 dL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
+|.++..-.+.++++-..+..|...+.+++.++|++||++++-
T Consensus 122 ~l~~~i~~~~~~~~~~~~~~~G~~~dl~~i~~ia~~~g~~~~v 164 (243)
T 2vi8_A 122 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMV 164 (243)
T ss_dssp HHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEEH
T ss_conf 9999998625634653134678766899999877651959873
No 23
>>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} (A:)
Probab=45.62 E-value=23 Score=16.88 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHCCCCEE
Q ss_conf 999999999970899458
Q gi|254780359|r 46 CTSEKMAFIIRHTCGIVC 63 (210)
Q Consensus 46 vt~e~i~fm~~~~~Glic 63 (210)
.+++.+.-.++.....++
T Consensus 107 ~~~~~le~~l~~~~~~v~ 124 (394)
T 1o69_A 107 IDVDLLKLAIKECEKKPK 124 (394)
T ss_dssp BCHHHHHHHHHHCSSCCC
T ss_pred CCHHHHHHHHHHCCCCCE
T ss_conf 220335555410356867
No 24
>>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} (A:217-282)
Probab=43.37 E-value=19 Score=17.34 Aligned_cols=17 Identities=6% Similarity=0.235 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHCCCEE
Q ss_conf 98999999998389077
Q gi|254780359|r 180 KGKQVIEFSKKYDLKII 196 (210)
Q Consensus 180 ~~~~~~~fA~~~~lp~i 196 (210)
+.+++.+|++++++|+|
T Consensus 6 ~~~~~~~~~~~ig~PvV 22 (66)
T 1w96_A 6 SPEDGLQKAKRIGFPVM 22 (66)
T ss_dssp SHHHHHHHHHHHCSSEE
T ss_pred CHHHHHHHHHHCCCCEE
T ss_conf 99999999985698789
No 25
>>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* (A:110-328,A:442-525)
Probab=41.17 E-value=14 Score=18.24 Aligned_cols=12 Identities=8% Similarity=-0.147 Sum_probs=5.1
Q ss_pred HHHCCHHHHHHH
Q ss_conf 445999999999
Q gi|254780359|r 43 AIHCTSEKMAFI 54 (210)
Q Consensus 43 Ae~vt~e~i~fm 54 (210)
....+++.++.+
T Consensus 65 St~Ln~~a~~ql 76 (303)
T 3jsz_A 65 SSLLNPEANRQX 76 (303)
T ss_dssp STTSCHHHHHHH
T ss_pred HHHCCHHHHHHH
T ss_conf 132388999999
No 26
>>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, joint center for structural genomics, JCSG; HET: PGE; 2.13A {Mesorhizobium SP} (A:276-472)
Probab=40.28 E-value=22 Score=16.92 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=28.9
Q ss_pred HHHHHHHHHH-HHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCC
Q ss_conf 5669999999-968982999967789887013348445999999999970899
Q gi|254780359|r 9 ERYIEDVIQS-FQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG 60 (210)
Q Consensus 9 ~~~ie~ai~a-l~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~G 60 (210)
+.++++||+. +..++||+|.|..|.-+-|- +. =++..+..|+++.-.
T Consensus 3 ~~~~~eAi~~A~~~~~PvvlaD~~DNpg~G~----~g-D~T~iL~~lL~~~~~ 50 (197)
T 3iuu_A 3 LXSVDKALEIARTSRQLLALGDQGDRVXGAG----PG-DSPEIARVALEHFPG 50 (197)
T ss_dssp CBCHHHHHHHHHTCSSEEEEEEGGGCGGGTC----CC-CCCHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCCCCCCC----CC-CCHHHHHHHHHCCCC
T ss_conf 6434568887523688556256788766675----42-008999999844777
No 27
>>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} (A:1-251)
Probab=39.02 E-value=29 Score=16.16 Aligned_cols=70 Identities=17% Similarity=-0.026 Sum_probs=43.3
Q ss_pred HHCCCCCCCEEEECC--CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 313898500100126--98246678026776998876996005988853-688750598999999998389077
Q gi|254780359|r 126 NFVRPGHIFPLISRD--GGVLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 126 df~~PGHV~pL~a~~--gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
++..|+++.++.... .++....+.+ -..++.++..-.+..++++.. +..|.+++.+++.++|++|+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~v~~~~~~~~~g~~~dl~~i~~la~~~g~~~i 172 (251)
T 1n8p_A 100 GDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQD 172 (251)
T ss_dssp SSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTT
T ss_pred ECCCCCCHHHHHHHHHCCCEEEEEEEC-CHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHCCCCCC
T ss_conf 045565213444444117449999835-8689998737786089921689954442334665655431123578
No 28
>>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} (A:1-246)
Probab=38.09 E-value=30 Score=16.07 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=31.2
Q ss_pred HHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 98876996005988853-6887505989999999983890777
Q gi|254780359|r 156 LCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 156 L~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
+.+...-.+-.+++|.+ +..|+..+.+.+.+.|++||++++-
T Consensus 130 i~~~i~~~t~~i~~~~~~~~~g~~~Di~~i~~ia~~~g~~li~ 172 (246)
T 1cs1_A 130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVV 172 (246)
T ss_dssp HHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHCCCCCCEEEEECCCCCCCEECCHHHHHHHHHHCCCEEEE
T ss_conf 8751276662799714565531004579886666524866997
No 29
>>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} (A:81-271)
Probab=35.71 E-value=33 Score=15.83 Aligned_cols=31 Identities=10% Similarity=0.258 Sum_probs=14.8
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 5988853688750598999999998389077
Q gi|254780359|r 166 AVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 166 ~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
.+++..-+..|.....+++.+++++|+++++
T Consensus 97 ~~~~~~~~~~g~~~dl~~i~~~~~~~~~~li 127 (191)
T 3a2b_A 97 ICTDGIFSMEGDIVNLPELTSIANEFDAAVM 127 (191)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTCEEE
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHCEEEE
T ss_conf 8713666898876479999999997294899
No 30
>>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* (A:108-293)
Probab=35.58 E-value=33 Score=15.82 Aligned_cols=62 Identities=15% Similarity=-0.004 Sum_probs=46.1
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-----CHHHHHHHHHHHCCCEEE
Q ss_conf 00126982466780267769988769960059888536887505-----989999999983890777
Q gi|254780359|r 136 LISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIK-----KGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 136 L~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~-----~~~~~~~fA~~~~lp~i~ 197 (210)
..-.+.....+....+..-++.+.-+-..+++|+|-+...|.+. =...+.+.+++|++++|-
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~i~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~ 132 (186)
T 3k28_A 66 EGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIF 132 (186)
T ss_dssp HHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8757776430122487767899854886438997731378886578989999999999982989998
No 31
>>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} (A:1-326)
Probab=34.02 E-value=35 Score=15.66 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 67769988769960059888536-887505989999999983890777
Q gi|254780359|r 151 EASVDLCKITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 151 EaavdL~~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
.-.-+|...-.-....|+++-++ ..|.....+++.++|++||++++-
T Consensus 205 ~d~~~l~~ai~~~t~lV~~~~~~n~~G~~~di~~i~~~a~~~g~~viv 252 (326)
T 1ibj_A 205 TKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLV 252 (326)
T ss_dssp TSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEE
T ss_pred CCHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 113566640376714999658898644446668999874226513998
No 32
>>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} (A:)
Probab=32.35 E-value=35 Score=15.70 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHCCCEEEH
Q ss_conf 9899999999838907779
Q gi|254780359|r 180 KGKQVIEFSKKYDLKIISV 198 (210)
Q Consensus 180 ~~~~~~~fA~~~~lp~i~i 198 (210)
+.++++.||++||+++.-.
T Consensus 60 skE~AIayaek~G~~y~V~ 78 (106)
T 2jya_A 60 TQEQAEAYAQRKGIEYRVI 78 (106)
T ss_dssp SHHHHHHHHHHHTCEEEEC
T ss_pred CHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999879659998
No 33
>>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} (A:64-329)
Probab=32.22 E-value=38 Score=15.48 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=29.6
Q ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 960059888536887505989999999983890777
Q gi|254780359|r 162 LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 162 l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
-....+++-..+..|...+.+++.+.+++||++++.
T Consensus 138 ~~t~~~i~~~~~~~G~~~~l~~I~~la~~~g~~v~~ 173 (266)
T 2a7v_A 138 LFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLA 173 (266)
T ss_dssp HHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEE
T ss_pred HHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 407765884320033446689999887404761882
No 34
>>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} (A:133-202)
Probab=32.16 E-value=38 Score=15.47 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHCCCE
Q ss_conf 9899999999838907
Q gi|254780359|r 180 KGKQVIEFSKKYDLKI 195 (210)
Q Consensus 180 ~~~~~~~fA~~~~lp~ 195 (210)
+.+++.+|+++.|+|+
T Consensus 7 s~ee~~~~~~~iG~Pv 22 (70)
T 2vpq_A 7 DVSEAKKIAKKIGYPV 22 (70)
T ss_dssp CHHHHHHHHHHHCSSE
T ss_pred CHHHHHHHHHHCCCCE
T ss_conf 9999999999739958
No 35
>>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B (A:34-186)
Probab=31.09 E-value=38 Score=15.47 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 6999999996898299996778988
Q gi|254780359|r 11 YIEDVIQSFQKGEMVIVTDADDREN 35 (210)
Q Consensus 11 ~ie~ai~al~~G~~Viv~D~~dREn 35 (210)
-+..+|+.+-+|+-+||.-|++||=
T Consensus 9 L~a~~l~~ll~G~s~iviTD~~R~W 33 (153)
T 2uvp_A 9 LIAQTISHVLNGGSLLVSADSSRHW 33 (153)
T ss_dssp HHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 9999999985797699996871778
No 36
>>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural genomics, protein structure initiative, PSI; 1.75A {Escherichia coli O157} (A:189-210,A:255-260,A:317-351)
Probab=30.38 E-value=6.5 Score=20.29 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHCCHHHHCCCCCC
Q ss_conf 89999999998420132431389850
Q gi|254780359|r 108 DDRAYTIKNLANPHSIADNFVRPGHI 133 (210)
Q Consensus 108 ~DRa~TIr~la~~~~~~~df~~PGHV 133 (210)
.+|..|+|+++....+|++|.-+|-.
T Consensus 27 ~~R~LTvRE~aRLQGFPDdf~f~gs~ 52 (63)
T 3g7u_A 27 LHRVITPREAARLQGFPDWFRFHVTK 52 (63)
T ss_dssp CCSBCCHHHHHHHHTCCTTCCCCSSH
T ss_pred CCCCCCHHHHHHHCCCCCCCEECCCH
T ss_conf 54588899999978799996869798
No 37
>>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:689-756)
Probab=29.23 E-value=41 Score=15.23 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHCCCE
Q ss_conf 899999999838907
Q gi|254780359|r 181 GKQVIEFSKKYDLKI 195 (210)
Q Consensus 181 ~~~~~~fA~~~~lp~ 195 (210)
.+++.+|++++|+|+
T Consensus 10 ~~e~~~~~~~~g~Pv 24 (68)
T 1a9x_A 10 IEMAVEKAKEIGYPL 24 (68)
T ss_dssp HHHHHHHHHHHCSSE
T ss_pred CHHHHHHHHHCCCCE
T ss_conf 047789998659766
No 38
>>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* (A:)
Probab=28.67 E-value=43 Score=15.10 Aligned_cols=61 Identities=7% Similarity=0.033 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEECC----------------CCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 56699999999689829999677----------------89887013348445999999999970899458614689
Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDAD----------------DRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH 69 (210)
Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~----------------dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~ 69 (210)
...+++.|..+-..+.++++.+. ..-+.||-|+-....-+..+..+...+.-.+.++.+.+
T Consensus 36 ~~~l~~~ia~~~g~~~~v~~~sgt~a~~~a~~al~~~~~~~~~~Gd~Vi~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 112 (390)
T 3b8x_A 36 VKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN 112 (390)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999785927998477999999999986557508899973102023342402334403432221344555
No 39
>>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* (A:39-271)
Probab=28.11 E-value=44 Score=15.04 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=9.6
Q ss_pred ECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 3688750598999999998389077
Q gi|254780359|r 172 VNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 172 l~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
.+..|+.++.+++.+++++||++++
T Consensus 120 ~~~~g~~~~~~~i~~~a~~~~~~ii 144 (233)
T 2oga_A 120 VHLYGHPADMDALRELADRHGLHIV 144 (233)
T ss_dssp BCGGGCCCCHHHHHHHHHHHTCEEC
T ss_pred EECCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 6358864524478887776096035
No 40
>>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* (A:1-137,A:202-246)
Probab=28.10 E-value=44 Score=15.04 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=17.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHH
Q ss_conf 5368875059899999999838907779999999
Q gi|254780359|r 171 LVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAW 204 (210)
Q Consensus 171 il~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~y 204 (210)
++...|. -+...+..+|++++++.|+..||++-
T Consensus 32 IiGpPGS-GKsT~a~~La~~ygl~hIs~gdllR~ 64 (182)
T 2bbw_A 32 ILGPPGS-GKGTVCQRIAQNFGLQHLSSGHFLRE 64 (182)
T ss_dssp EECCTTS-SHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred EECCCCC-CHHHHHHHHHHHHCCEEECHHHHHHH
T ss_conf 9899999-87999999999879888748999999
No 41
>>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} (A:1-119)
Probab=27.77 E-value=35 Score=15.67 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=50.4
Q ss_pred CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 3898500100126982466780267769988769960059888536887505989999999983890777
Q gi|254780359|r 128 VRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 128 ~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
..|..|..+-..+-..+.+-+..+..-.|-++....|.++|.- -+...-+++.++|++|++|++.
T Consensus 48 ~~p~RIQilG~~E~~Yl~~l~~e~r~~~l~~l~~~~~P~iIvt-----~~~~~p~~l~~~a~~~~iPll~ 112 (119)
T 1knx_A 48 SQIGSVAILGKREFGFLSQKTLVEQQQILHNLLKLNPPAIILT-----KSFTDPTVLLQVNQTYQVPILK 112 (119)
T ss_dssp SCCCBCEEECHHHHHHHTTSCHHHHTTTHHHHHTTCCSCEEEE-----TTTCCCHHHHHHGGGTCCCEEE
T ss_pred CCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHCCCEEEE
T ss_conf 6988799987899999982999999999999838899889998-----9599999999999983953998
No 42
>>3hvy_A Cystathionine beta-lyase family protein, YNBB B.subtilis ortholog; NP_348457.1; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} (A:66-280)
Probab=27.56 E-value=45 Score=14.98 Aligned_cols=43 Identities=7% Similarity=-0.069 Sum_probs=29.3
Q ss_pred HHHHHCCCCCEEEEEEEE-C----CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 998876996005988853-6----887505989999999983890777
Q gi|254780359|r 155 DLCKITGLPPIAVICELV-N----DDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 155 dL~~lAGl~P~~vi~Eil-~----~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
.+...-.-.+..++.+.. + ..|+....+++.++|++||++++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~i~~~a~~~g~~li~ 150 (215)
T 3hvy_A 103 KEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIV 150 (215)
T ss_dssp HHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEE
T ss_pred HHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 986165677499995788877778637799999999999985689889
No 43
>>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-amino-7-ketopelargonate synthase; 1.65A {Escherichia coli} (A:77-263)
Probab=27.55 E-value=45 Score=14.98 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=14.8
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 988853688750598999999998389077
Q gi|254780359|r 167 VICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 167 vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
+++-.-+..|.++..+++.+++++|+++++
T Consensus 97 ~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~ 126 (187)
T 1bs0_A 97 VTEGVFSMDGDSAPLAEIQQVTQQHNGWLM 126 (187)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 952777888772114779999885490997
No 44
>>3gmt_A Adenylate kinase; ssgcid, ATP- binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} (A:1-119,A:201-230)
Probab=27.38 E-value=46 Score=14.96 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=15.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf 536887505989999999983890777999999
Q gi|254780359|r 171 LVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIA 203 (210)
Q Consensus 171 il~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~ 203 (210)
|+...|. -+...+..+|++++++.|+..|+++
T Consensus 13 I~GpPGS-GKsT~a~~La~~~gl~hIs~gdlir 44 (149)
T 3gmt_A 13 LLGAPGA-GKGTQANFIKEKFGIPQISTGDXLR 44 (149)
T ss_dssp EECCTTS-CHHHHHHHHHHHHTCCEECHHHHHH
T ss_pred EECCCCC-CHHHHHHHHHHHHCCEEECHHHHHH
T ss_conf 9899999-8799999999987995774999999
No 45
>>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase, asparaginase, hydrolase; 1.90A {Homo sapiens} PDB: 2a8i_A 2a8m_A 2a8l_A (A:)
Probab=27.36 E-value=27 Score=16.39 Aligned_cols=27 Identities=4% Similarity=0.031 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf 505989999999983890777999999
Q gi|254780359|r 177 TIKKGKQVIEFSKKYDLKIISVQDLIA 203 (210)
Q Consensus 177 ~~~~~~~~~~fA~~~~lp~i~i~dli~ 203 (210)
.++-++.+.+||+++|++++.-+.++.
T Consensus 163 ~~LvGegA~~fA~~~G~~~~~~~~l~t 189 (420)
T 2a8j_A 163 CFLVGEGAYRWAVDHGIPSCPPNIMTT 189 (420)
T ss_dssp SEEEHHHHHHHHHHTTCCBCC------
T ss_pred EEEECHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 699756589999970986204434478
No 46
>>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A (A:1-30,A:151-260)
Probab=27.01 E-value=19 Score=17.28 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=51.4
Q ss_pred CCEEEEHHHCCHHHHHHHH-HHCCCCEEEE-----CCHHHHHHHHCCCCCCCCCC--CCCCCEEEEEECCCCC-CCCCCH
Q ss_conf 0133484459999999999-7089945861-----46899987403643244566--5665217887203477-789998
Q gi|254780359|r 37 ADLVLAAIHCTSEKMAFII-RHTCGIVCTP-----MPFHTAHKLKLNPMVLENES--VHKTAFTVSVDSKHGI-TTGISA 107 (210)
Q Consensus 37 gDlv~~Ae~vt~e~i~fm~-~~~~Glic~a-----l~~~~~~~L~Lp~m~~~n~~--~~~taFtvsvd~~~g~-tTGISa 107 (210)
-+.|+-++-++|..+..|. .+..|+++-. =..-.|+.+|+|.++.-... .-...-.+.||...|. ..+=+.
T Consensus 36 e~~ILVa~el~Ps~~~~l~~~~v~GiVt~~GG~tSHaAIlARslGIPaivG~~~~~~~i~~G~~ViiDg~~G~V~i~P~~ 115 (140)
T 2wqd_A 36 ESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSASAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTE 115 (140)
T ss_dssp CCEEEEESCCCHHHHTTCCTTTEEEEEESSCCTTSHHHHHHHHTTCCEEECCSSHHHHCCTTCEEEEETTTTEEEESCCH
T ss_pred CCEEEEECCCCCHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEECCCCEEEEECCC
T ss_conf 97699951488044311452103689997057634399999983998497136302231489789984688469973450
Q ss_pred HHHHHHHH
Q ss_conf 89999999
Q gi|254780359|r 108 DDRAYTIK 115 (210)
Q Consensus 108 ~DRa~TIr 115 (210)
..++.--+
T Consensus 116 ~~i~~y~~ 123 (140)
T 2wqd_A 116 DELIAYQD 123 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 25655468
No 47
>>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding; 2.60A {Lupinus luteus} (A:74-142)
Probab=26.91 E-value=28 Score=16.28 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=19.1
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 887505989999999983890777
Q gi|254780359|r 174 DDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 174 ~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
.+-.++-++.+.+||+++|+++++
T Consensus 46 ~~h~~LvG~gA~~fA~~~G~~~~d 69 (69)
T 2gez_A 46 TPHIYLAFQGAQDFAKQQGVETVD 69 (69)
T ss_dssp SSCSEEEHHHHHHHHHHHTCCBCC
T ss_pred CCCEEEECHHHHHHHHHCCCCCCC
T ss_conf 742166647899999984997368
No 48
>>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structural genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19} (A:1-10,A:96-186)
Probab=26.68 E-value=40 Score=15.34 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHCCCEEEHHHHHH--HHHH
Q ss_conf 5989999999983890777999999--9984
Q gi|254780359|r 179 KKGKQVIEFSKKYDLKIISVQDLIA--WRKK 207 (210)
Q Consensus 179 ~~~~~~~~fA~~~~lp~i~i~dli~--yr~~ 207 (210)
.-.+++.+.|+++|+|+-.+.+.+. |+++
T Consensus 50 PEyED~k~iA~~~gipl~eV~~~i~~~~~e~ 80 (101)
T 3c19_A 50 AEFDECREIGEETGIPPREVKAMVEAAARVG 80 (101)
T ss_dssp ECHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 1899999999997939999999999998863
No 49
>>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} (A:1-259)
Probab=26.39 E-value=48 Score=14.85 Aligned_cols=51 Identities=8% Similarity=-0.066 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEEC--CCCCCCC---HHHHHHHHHHHCCCEEE
Q ss_conf 780267769988769960059888536--8875059---89999999983890777
Q gi|254780359|r 147 PGHTEASVDLCKITGLPPIAVICELVN--DDGTIKK---GKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 147 ~GHTEaavdL~~lAGl~P~~vi~Eil~--~~G~~~~---~~~~~~fA~~~~lp~i~ 197 (210)
..+-|..++-...++..|..++.++.- ..|.... .+++.+++++|+++++.
T Consensus 123 ~~~le~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~i~~ia~~~g~~liv 178 (259)
T 1v72_A 123 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHM 178 (259)
T ss_dssp HHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77753232012323345441343111221123214478765456677765477764
No 50
>>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure initiative, PSI; 1.85A {Archaeoglobus fulgidus} (A:1-144)
Probab=26.29 E-value=40 Score=15.31 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHHHCCCC
Q ss_conf 678026776998876996
Q gi|254780359|r 146 RPGHTEASVDLCKITGLP 163 (210)
Q Consensus 146 R~GHTEaavdL~~lAGl~ 163 (210)
..|.|+.+.+.++-.+..
T Consensus 102 ~~~ft~~A~~~a~~~~i~ 119 (144)
T 1y88_A 102 NTKFSEEAKKYAGCVGIK 119 (144)
T ss_dssp SSEECHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHCCCE
T ss_conf 896799999999975978
No 51
>>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=25.87 E-value=49 Score=14.79 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCE
Q ss_conf 757795669999999968982
Q gi|254780359|r 4 KKSLDERYIEDVIQSFQKGEM 24 (210)
Q Consensus 4 ~~~~~~~~ie~ai~al~~G~~ 24 (210)
..+..+..+++||+++++|++
T Consensus 11 ~~~yt~e~l~~Ai~aV~~g~m 31 (70)
T 2cob_A 11 YRQYNSEILEEAISVVMSGKM 31 (70)
T ss_dssp SCCCCHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHHHCCE
T ss_conf 233688899999999983541
No 52
>>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} (A:1-129,A:223-273)
Probab=25.63 E-value=36 Score=15.63 Aligned_cols=40 Identities=5% Similarity=-0.038 Sum_probs=21.2
Q ss_pred HHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 8769960059888536-887505989999999983890777
Q gi|254780359|r 158 KITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 158 ~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
...|+.|+.+++-.=+ ..|..-...++.+||++|++|+.-
T Consensus 61 ~~~~l~~~~vV~v~Gttg~ggiD~~~~i~~~are~~ip~hg 101 (180)
T 2w7t_A 61 ARKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFG 101 (180)
T ss_dssp HHHHHHTCSEEEECCCCTTTTHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 99874367745737847878706899999999973886034
No 53
>>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} (A:55-296)
Probab=25.59 E-value=49 Score=14.75 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHH--CCHHHHCCCCCCCEEEE---CCCCCCCC----CCHH-HHHHH-HHHHCCCCCEEEEEEEECCCC
Q ss_conf 89999999998420--13243138985001001---26982466----7802-67769-988769960059888536887
Q gi|254780359|r 108 DDRAYTIKNLANPH--SIADNFVRPGHIFPLIS---RDGGVLVR----PGHT-EASVD-LCKITGLPPIAVICELVNDDG 176 (210)
Q Consensus 108 ~DRa~TIr~la~~~--~~~~df~~PGHV~pL~a---~~gGvl~R----~GHT-Eaavd-L~~lAGl~P~~vi~Eil~~~G 176 (210)
..-...+..+..+. ..-.++..|.+..++.. ...+.... .+.+ +..++ +-+..+-....|+.-..+..|
T Consensus 64 ~a~~~~~~a~~~~g~~vi~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~~~~~G 143 (242)
T 3h7f_A 64 QANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYP 143 (242)
T ss_dssp HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCC
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCE
T ss_conf 78999999862889701233046677445555445555532134456660343310468999976336756986564532
Q ss_pred CCCCHHHHHHHHHHHCCCEEE
Q ss_conf 505989999999983890777
Q gi|254780359|r 177 TIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 177 ~~~~~~~~~~fA~~~~lp~i~ 197 (210)
...+.+++.+++++||++++.
T Consensus 144 ~~~~l~~i~~la~~~g~~~iv 164 (242)
T 3h7f_A 144 RVLDFAAFRSIADEVGAKLLV 164 (242)
T ss_dssp SCCCHHHHHHHHHHHTCEEEE
T ss_pred ECCCHHHHHHHHHHCCCEEEC
T ss_conf 025689999987630415862
No 54
>>3hqs_A CAI-1 autoinducer synthase; quorum sensing, CQSA, PLP, virulence, acyltransferase, aminotransferase, pyridoxal phosphate, transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A (A:)
Probab=25.42 E-value=50 Score=14.74 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 246678026776998876996005988853-6887505989999999983890777
Q gi|254780359|r 143 VLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 143 vl~R~GHTEaavdL~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
-..+..|....-.+..+..-...+++.|-+ +..|.....+++.+.+++||+.++-
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~G~~~~l~~i~~l~~~~g~~li~ 221 (409)
T 3hqs_A 166 QAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLV 221 (409)
T ss_dssp EEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEE
T ss_pred CCEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 32145578899998755325772598535545541011235666799984700020
No 55
>>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} (A:54-319)
Probab=25.06 E-value=50 Score=14.69 Aligned_cols=39 Identities=5% Similarity=-0.112 Sum_probs=32.5
Q ss_pred HHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 876996005988853688750598999999998389077
Q gi|254780359|r 158 KITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 158 ~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
+...-...++++-..+..|...+.+++.+.+++||++++
T Consensus 134 ~~~~~~~~~v~~~~~~~~G~~~~i~~i~~l~~~~g~~~~ 172 (266)
T 1rv3_A 134 ENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLM 172 (266)
T ss_dssp HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHCCCEEEECHHHCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 998740665488313441254677999887864497597
No 56
>>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} (A:72-139)
Probab=24.37 E-value=27 Score=16.37 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 87505989999999983890777
Q gi|254780359|r 175 DGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 175 ~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
+-.++-++.+.+||+++|+|..+
T Consensus 46 ~h~~L~G~gA~~fA~~~G~~~~~ 68 (68)
T 1k2x_A 46 PHVMMIGEGAENFAFARGMERVS 68 (68)
T ss_dssp SCSEEEHHHHHHHHHTTTCCCCC
T ss_pred CCEEEECHHHHHHHHHCCCCCCC
T ss_conf 98477537799999984996379
No 57
>>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} (A:103-174)
Probab=23.94 E-value=53 Score=14.56 Aligned_cols=15 Identities=0% Similarity=0.319 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHCCCE
Q ss_conf 899999999838907
Q gi|254780359|r 181 GKQVIEFSKKYDLKI 195 (210)
Q Consensus 181 ~~~~~~fA~~~~lp~ 195 (210)
.+++.+||++.|+|+
T Consensus 10 ~eea~~~a~~iGyPV 24 (72)
T 1uc8_A 10 REEALRLMEAFGYPV 24 (72)
T ss_dssp HHHHHHHHHHHCSSE
T ss_pred HHHHHHHHHHHCCCE
T ss_conf 167788776421100
No 58
>>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} (A:316-398)
Probab=23.71 E-value=54 Score=14.53 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCCCEEEHHHHHHHHHHC
Q ss_conf 999999998389077799999999843
Q gi|254780359|r 182 KQVIEFSKKYDLKIISVQDLIAWRKKK 208 (210)
Q Consensus 182 ~~~~~fA~~~~lp~i~i~dli~yr~~~ 208 (210)
.++..|-..+.-|+-|.+|||+|-+++
T Consensus 17 ~~Ln~YL~~~~~pvrSLadlIaFN~~h 43 (83)
T 1m22_A 17 AGLERYFNTHRAPLRSLADLIAFNQAH 43 (83)
T ss_dssp HHHHHHHHHTTCSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 989999875134320067888888753
No 59
>>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} (A:1-27,A:149-258)
Probab=22.37 E-value=51 Score=14.66 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=49.6
Q ss_pred CCCEEEEHHHCCHHHHHHHH-HHCCCCEEE-----ECCHHHHHHHHCCCCCCCCC--CCCCCCEEEEEECCCCC-CCCCC
Q ss_conf 70133484459999999999-708994586-----14689998740364324456--65665217887203477-78999
Q gi|254780359|r 36 EADLVLAAIHCTSEKMAFII-RHTCGIVCT-----PMPFHTAHKLKLNPMVLENE--SVHKTAFTVSVDSKHGI-TTGIS 106 (210)
Q Consensus 36 EgDlv~~Ae~vt~e~i~fm~-~~~~Glic~-----al~~~~~~~L~Lp~m~~~n~--~~~~taFtvsvd~~~g~-tTGIS 106 (210)
+-.-|+-++.+||..+..|- +...|+++- +=..-.|+.|++|.++.-.. +.....-.+.||...|. ..+=+
T Consensus 32 ~e~~ILVa~~l~Ps~~~~l~~~~i~GiVt~~GG~tSHaAIlARslgIPavvG~~~~~~~i~~g~~ViIDg~~G~V~i~P~ 111 (137)
T 1zym_A 32 QDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPT 111 (137)
T ss_dssp CSCEEEECSCCCHHHHHHSCGGGEEEEECSCCCSSSHHHHHHHHHTCCEECCCSCHHHHCCTTCEEEECCSSCCEEESCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCCEEEECCHHHHHCCCCCEEEEECCCCEEEECCC
T ss_conf 99869998278605666654302048997169987659999997399679971045640779999999899987998999
Q ss_pred HHHHHH
Q ss_conf 889999
Q gi|254780359|r 107 ADDRAY 112 (210)
Q Consensus 107 a~DRa~ 112 (210)
...+..
T Consensus 112 ~~~~~~ 117 (137)
T 1zym_A 112 NEVIDK 117 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 60
>>3e6g_A Xometc, cystathionine gamma-lyase-like protein; bacterial blight, cystathionine lyase, reverse transsulfuration pathway; 2.80A {Xanthomonas oryzae PV} (A:1-262)
Probab=22.17 E-value=57 Score=14.34 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=25.4
Q ss_pred EEEEEE-EECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 059888-536887505989999999983890777
Q gi|254780359|r 165 IAVICE-LVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 165 ~~vi~E-il~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
-.|++. .-+..|...+.+++.++|++|+++++.
T Consensus 154 k~v~i~~p~n~~G~v~dl~~i~~~a~~~g~~~i~ 187 (262)
T 3e6g_A 154 KMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVV 187 (262)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCCCCCEEECCCHHHHHHHHHCCCEEEE
T ss_conf 5999956753340332608899988636971786
No 61
>>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'- phosphate, hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} (A:63-272)
Probab=22.09 E-value=58 Score=14.33 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=30.6
Q ss_pred HHHHHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9988769960059888536-887505989999999983890777
Q gi|254780359|r 155 DLCKITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 155 dL~~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
++.+.-.-.+..|+++..+ ..|.+...+++.+.+++|+++++-
T Consensus 95 ~~~~ai~~~t~~v~~~~~~n~tG~~~~l~~i~~~~~~~~~~v~v 138 (210)
T 1qz9_A 95 ELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIW 138 (210)
T ss_dssp GHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHCCCCCEEEEEEEECCCCCCEECHHHHHHHHHHCCCEEEE
T ss_conf 99974688835999975248877461699999886205742898
No 62
>>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:133-203)
Probab=21.54 E-value=59 Score=14.26 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=5.6
Q ss_pred HHHHHHCCCCCC
Q ss_conf 998740364324
Q gi|254780359|r 70 TAHKLKLNPMVL 81 (210)
Q Consensus 70 ~~~~L~Lp~m~~ 81 (210)
.++++|.|.++.
T Consensus 14 ~a~~iG~PvVvK 25 (71)
T 1ulz_A 14 LAREIGYPVLLK 25 (71)
T ss_dssp HHHHHCSSEEEE
T ss_pred HHHHCCCCEEEE
T ss_conf 998559969999
No 63
>>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A (A:138-209)
Probab=21.52 E-value=59 Score=14.26 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=4.1
Q ss_pred HHHHHCCCCC
Q ss_conf 9874036432
Q gi|254780359|r 71 AHKLKLNPMV 80 (210)
Q Consensus 71 ~~~L~Lp~m~ 80 (210)
++++|.|.++
T Consensus 17 a~~igyPvvv 26 (72)
T 2yrx_A 17 IEQKGAPIVI 26 (72)
T ss_dssp HHHHCSSEEE
T ss_pred HHHCCCEEEE
T ss_conf 6504652999
No 64
>>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A (A:124-287)
Probab=21.43 E-value=59 Score=14.25 Aligned_cols=23 Identities=9% Similarity=-0.206 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 99999999970899458614689
Q gi|254780359|r 47 TSEKMAFIIRHTCGIVCTPMPFH 69 (210)
Q Consensus 47 t~e~i~fm~~~~~Glic~al~~~ 69 (210)
-+.....+...+..++.++....
T Consensus 35 ~~~~~~~~~~~g~~~~~v~~~~~ 57 (164)
T 2w8t_A 35 HASIYDGCQQGNAEIVRFRHNSV 57 (164)
T ss_dssp CHHHHHHHHHSCSEEEEECTTCH
T ss_pred CHHHHCCCCCCCCCEEEECCCCH
T ss_conf 47022163235761699467857
No 65
>>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:1-27,A:149-257)
Probab=21.30 E-value=39 Score=15.40 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=51.7
Q ss_pred CCCEEEEHHHCCHHHHHHHH-HHCCCCEEEE-----CCHHHHHHHHCCCCCCCCCC--CCCCCEEEEEECCCCC-CCCCC
Q ss_conf 70133484459999999999-7089945861-----46899987403643244566--5665217887203477-78999
Q gi|254780359|r 36 EADLVLAAIHCTSEKMAFII-RHTCGIVCTP-----MPFHTAHKLKLNPMVLENES--VHKTAFTVSVDSKHGI-TTGIS 106 (210)
Q Consensus 36 EgDlv~~Ae~vt~e~i~fm~-~~~~Glic~a-----l~~~~~~~L~Lp~m~~~n~~--~~~taFtvsvd~~~g~-tTGIS 106 (210)
+...|+-|+-++|..+..|. .+..|+++-. -..-.|+.+++|.++.-... .-...-.+.||...|. .-+=+
T Consensus 32 ~~~~ILVa~el~Ps~~~~l~~~~i~GiVt~~GG~tSHaAIiAR~lgIP~Vvg~~~~~~~i~~G~~viiDg~~G~V~inP~ 111 (136)
T 2hwg_A 32 QDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSXTSIXARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPT 111 (136)
T ss_dssp CSCEEEEESCCCHHHHHTCCTTTEEEEEESSCCTTSHHHHHHHHTTCCEEECCSCHHHHCCTTCEEEEETTTTEEEESCC
T ss_pred CCCEEEEEECCCHHHHHHCCHHHHEEEEEECCCCCCCHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCEEEEECCC
T ss_conf 99879998458767788607354016667626654209999997288648742542223056508998154017860354
Q ss_pred HHHHHHHHHHH
Q ss_conf 88999999999
Q gi|254780359|r 107 ADDRAYTIKNL 117 (210)
Q Consensus 107 a~DRa~TIr~l 117 (210)
...+..--+..
T Consensus 112 ~~~~~~y~~~~ 122 (136)
T 2hwg_A 112 NEVIDKXRAVQ 122 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 01344555568
No 66
>>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} (A:)
Probab=21.15 E-value=60 Score=14.21 Aligned_cols=31 Identities=23% Similarity=0.556 Sum_probs=22.0
Q ss_pred EEEECCCCC---CCCHHHHHHHHHHHCCCEEEHH
Q ss_conf 885368875---0598999999998389077799
Q gi|254780359|r 169 CELVNDDGT---IKKGKQVIEFSKKYDLKIISVQ 199 (210)
Q Consensus 169 ~Eil~~~G~---~~~~~~~~~fA~~~~lp~i~i~ 199 (210)
.-+++++|. .++..++.+.|++.++-++.++
T Consensus 16 VrlId~~g~~lGv~~~~eAl~~A~~~~lDLV~v~ 49 (78)
T 1tif_A 16 VRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVA 49 (78)
T ss_dssp EEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCEECCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 9998799968572249999999998167879844
No 67
>>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 1eqb_A* (A:40-284)
Probab=20.54 E-value=62 Score=14.13 Aligned_cols=36 Identities=6% Similarity=-0.098 Sum_probs=28.7
Q ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 996005988853688750598999999998389077
Q gi|254780359|r 161 GLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 161 Gl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
.-....++....+..|.+...+++.++|++||++++
T Consensus 127 ~~~~~v~~~~~~~~~g~~~~i~~I~~~a~~~gi~~~ 162 (245)
T 3gbx_A 127 KEHKPKXIIGGFSAYSGVVDWAKXREIADSIGAYLF 162 (245)
T ss_dssp HHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEE
T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEE
T ss_conf 874775488445335565578999998874381788
No 68
>>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A (A:)
Probab=20.38 E-value=62 Score=14.11 Aligned_cols=59 Identities=12% Similarity=0.060 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC------------------CCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCH
Q ss_conf 66999999996898299996778------------------988701334844599999999997089945861468
Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDADD------------------RENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPF 68 (210)
Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~d------------------REnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~ 68 (210)
..+++++..+-..+-++.+.+.. .=++||-|+--...-+..++-+...+.-.+.+.++.
T Consensus 65 ~~l~~~~a~~~~~~~~v~~~~gt~a~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~v~v~~~~ 141 (437)
T 3bb8_A 65 DAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDI 141 (437)
T ss_dssp HHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEET
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEECCCCC
T ss_conf 99999999997998399965679999999997415135541466898688346443005999986245337525665
Done!