RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein
(riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str.
psy62]
(210 letters)
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate
synthase; riboflavine biosynthesis, skeletal
rearrangement, antimicrobial target; 1.40A {Escherichia
coli} (A:)
Length = 217
Score = 259 bits (663), Expect = 2e-70
Identities = 81/198 (40%), Positives = 127/198 (64%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
+E+ + + ++G V+V D +DRENE D++ A T E+MA IRH GIVC +
Sbjct: 16 VENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRR 75
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
+L L MV N S + T FTV++++ G+TTG+SA DR T++ + + RPG
Sbjct: 76 KQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPG 135
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
H+FPL ++ GGVL R GHTEA++DL + G P V+CEL NDDGT+ + + IEF+ K+
Sbjct: 136 HVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKH 195
Query: 192 DLKIISVQDLIAWRKKKE 209
++ +++++DL+A+R+ E
Sbjct: 196 NMALVTIEDLVAYRQAHE 213
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesis, synthetic gene, isomerase; 1.60A {Candida
albicans SC5314} (A:)
Length = 204
Score = 258 bits (660), Expect = 4e-70
Identities = 89/197 (45%), Positives = 132/197 (67%), Gaps = 1/197 (0%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
IE+ +++++ GE +IV D +DRENE DL++AA T EKMAF++R++ G VC P+ A
Sbjct: 8 IEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERA 67
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
++L+L PM+ H TA+T++ D G TTGISA DRA T ++LANP+S +F++PG
Sbjct: 68 NQLELPPMLANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPG 127
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKK 190
HI PL + G + R GHTEA+V L + GL P VICELV ++DG + + I+F KK
Sbjct: 128 HILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKK 187
Query: 191 YDLKIISVQDLIAWRKK 207
+ +KII++ L+ + K
Sbjct: 188 HGIKIININQLVEYISK 204
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesis, antimicrobial target, structure-based
design, isomerase; 0.98A {Magnaporthe grisea} (A:)
Length = 233
Score = 257 bits (658), Expect = 7e-70
Identities = 92/210 (43%), Positives = 133/210 (63%), Gaps = 12/210 (5%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
I DVIQ+F+ GE V+V D RENEADL++AA T+E+MAF++RH+ G++C P+
Sbjct: 15 IPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERT 74
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKH-GITTGISADDRAYTIKNLANPHSIADNFVRP 130
L L MV N TA+TVSVD++H TTGISA DRA + LA P + +F RP
Sbjct: 75 TALDLPQMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRP 134
Query: 131 GHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGT-----------IK 179
GH+FPL + GGV R GHTEA V+LC++ G P+AVI E+V+D +
Sbjct: 135 GHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGML 194
Query: 180 KGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209
+G + + F++++ LK+ +++D+IA +K E
Sbjct: 195 RGDECVAFARRWGLKVCTIEDMIAHVEKTE 224
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate
synthase; riboflavin biosynthesis, isomerase; HET: 5RP;
1.55A {Methanocaldococcus jannaschii} (A:)
Length = 227
Score = 250 bits (641), Expect = 7e-68
Identities = 63/223 (28%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
+E I++ +KGE+++V D+D+RE E D+V+A+ T E + + + G++CT +
Sbjct: 4 VEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDIC 63
Query: 72 HKLKLNPMV------------------LENESVHKTAFTVSVDSKHGITTGISADDRAYT 113
+KL + MV + K++F+++++ + TGI+ +DRA+T
Sbjct: 64 NKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAFT 122
Query: 114 IKNLAN------PHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV 167
IK LA + F PG + L + +G V R GHTE +V L ++ L PI
Sbjct: 123 IKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITT 182
Query: 168 ICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210
ICE++ DDG + +++K++L +S +++I + K +
Sbjct: 183 ICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLDKYL 225
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Thermus thermophilus} PDB:
1wnz_A* 1wk8_A* 1udz_A 1ue0_A (A:)
Length = 186
Score = 28.6 bits (63), Expect = 0.71
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 123 IADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGK 182
+ ++V G V P ++ ++ GLP + V+++G +
Sbjct: 105 VLADYVSQE------DGTGIVHQAPAFGAEDLETARVYGLPLLKT----VDEEGKLLVEP 154
Query: 183 QVIEFSKKYDLKII 196
+ ++ + I+
Sbjct: 155 FKGLYFREANRAIL 168
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole,
immune system, antibody, ENA11His antibody,
immunoglobulin domain; 2.75A {Mus musculus} (A:1-150)
Length = 150
Score = 27.9 bits (61), Expect = 1.0
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 141 GGVLVRPGHTEASVDL-CKITG 161
G LVRPG SV L CK +G
Sbjct: 7 GAELVRPG---TSVKLSCKASG 25
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A
{Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
(A:100-257)
Length = 158
Score = 27.1 bits (59), Expect = 1.6
Identities = 7/75 (9%), Positives = 14/75 (18%), Gaps = 8/75 (10%)
Query: 22 GEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVL 81
TD + + + A I C L+ L
Sbjct: 86 RNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMI--------CGSPSMLEETSAVLDSFGL 137
Query: 82 ENESVHKTAFTVSVD 96
+ ++
Sbjct: 138 KISPRMGEPGDYLIE 152
>1hxs_1 Genome polyprotein, coat protein VP1; picornavirus, AB
initio phase determinaion, icosahedral virus; HET: MYR
PLM; 2.20A {Human poliovirus 1 mahoney} (1:76-302)
Length = 227
Score = 27.2 bits (60), Expect = 1.8
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 176 GTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209
T+ K + + I+ +D + R+K E
Sbjct: 15 MTVDNPASTTNKDKLFAVWKITYKDTVQLRRKLE 48
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2,
NYSGXRC, 11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
(A:1-127)
Length = 127
Score = 26.9 bits (59), Expect = 2.0
Identities = 9/63 (14%), Positives = 21/63 (33%)
Query: 10 RYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH 69
+ +I+S + V D+ + + DL + + E ++ +P H
Sbjct: 21 TFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATH 80
Query: 70 TAH 72
Sbjct: 81 APL 83
>2cqs_A Cellobiose phosphorylase; beta-sandwich, (alpha/alpha)6
barrel, transferase; HET: BGC; 2.00A {Cellvibrio gilvus}
PDB: 2cqt_A* (A:371-381,A:503-524,A:629-751)
Length = 156
Score = 26.2 bits (58), Expect = 3.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 136 LISRDGGVLVRPGHTEASVDLCKITGLPP 164
L + G VL P +T ++L +++ PP
Sbjct: 52 LGTPHGLVLQYPAYTTYQIELGEVSTYPP 80
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} (A:122-242)
Length = 121
Score = 26.5 bits (58), Expect = 3.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 IQSFQKGEMVIVTDADDRENEADLVLAAI 44
++ ++ V D +ADLV+ A+
Sbjct: 93 VERYEGDGRVQKVVTDKNAYDADLVVVAV 121
>2bh1_X General secretion pathway protein E,; transport protein,
type II secretion, EPS, GSP, transmembrane, transport,
ATP-binding; 2.4A {Vibrio cholerae} (X:)
Length = 96
Score = 26.3 bits (58), Expect = 3.3
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 4/49 (8%)
Query: 126 NFVRPGHIFPLISRDGGVLV----RPGHTEASVDLCKITGLPPIAVICE 170
+F + + D P EA V+ ++ +
Sbjct: 20 SFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVKHAFQLIELS 68
>2as0_A Hypothetical protein PH1915; RNA methyltransferase,
structural genomics, PSI, protein structure initiative;
1.80A {Pyrococcus horikoshii} (A:1-70)
Length = 70
Score = 25.4 bits (56), Expect = 5.7
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRE 34
+ V + G++V V +
Sbjct: 26 VVRVEGDIKPGDIVEVYTRGGKF 48
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A
{Escherichia coli} PDB: 2hqa_A* (A:390-432,A:511-559)
Length = 92
Score = 24.9 bits (55), Expect = 8.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 48 SEKMAFIIRHTCGIVCTPMP 67
+ ++ II H G+V P
Sbjct: 35 RDAVSQIITHAGGVVIAPTK 54
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, class I;
coenzyme A, flavin adenine dinucleotide,
selenomethionine, FAD, flavoprotein; HET: COA FAD; 1.90A
{Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
(A:159-278)
Length = 120
Score = 24.8 bits (54), Expect = 9.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 16 IQSFQKGEMVIVTDADDRENEADLVLAAI 44
+++F+ E V + D +ADLVL ++
Sbjct: 92 VKAFKGNERVEAVETDKGTYKADLVLVSV 120
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,593,213
Number of extensions: 70038
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 41
Length of query: 210
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 125
Effective length of database: 2,082,624
Effective search space: 260328000
Effective search space used: 260328000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)