HHsearch alignment for GI: 254780360 and conserved domain: COG1575
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism].
Probab=99.83 E-value=2.6e-17 Score=121.84 Aligned_cols=286 Identities=16% Similarity=0.164 Sum_probs=184.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHC--CCH
Q ss_conf 91036537999999626899999999999999708--9-899899999999999999999988633066--1201--371
Q gi|254780360|r 1 MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAP--G-HISVLKSVISIFAIAMGAGASGALNMYYDA--DIDK--MMA 73 (305)
Q Consensus 1 ~~~~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~--~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~--~iD~--~~~ 73 (305)
T Consensus 1 ~~~~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~ 80 (303)
T COG1575 1 MSQKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDR 80 (303)
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98561799999986486401788999999999999974653899999999999999999998776223422778898741
Q ss_pred HHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHH-H
Q ss_conf 21070566530478989998888776689998---863445899999998886544454431026656--05888877-6
Q gi|254780360|r 74 RTASRPIPLGQISPWEAWVLGVSLAVSSIVIM---GLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQ--NIVIGGIA-G 147 (305)
Q Consensus 74 RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l---~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~--~~~~~~i~-g 147 (305)
T Consensus 81 ~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~-g~~YTgGp~PlgY~gLGEi~~~vffG 159 (303)
T COG1575 81 LKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAA-GILYTGGPFPLGYMGLGEIFVGVFFG 159 (303)
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-EEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 24665431345888899999999999999999999997446999999999973-01013699674667788999999998
Q ss_pred HHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64221101323688566321114788889999999998653566664101335124338877899743456898998764
Q gi|254780360|r 148 AIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLP 227 (305)
Q Consensus 148 a~~~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~ 227 (305)
T Consensus 160 ~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~ 239 (303)
T COG1575 160 PLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIF 239 (303)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999996164108989999999999999998621334501786696011346254758999999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 210221089999999999999999999995048899-7-8999998798999999999999986
Q gi|254780360|r 228 TMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKD-I-RVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 228 ~~~~~~g~~yli~ali~~~~~l~~a~~~~~~~~~~~-~-k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
T Consensus 240 ~i~~~~~~~~ll--~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~ 301 (303)
T COG1575 240 VILGLFPVWGLL--FLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILLSQ 301 (303)
T ss_pred HHHHHCCHHHHH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999622179999--99999999999999986168347779999999999999999999999996