HHsearch alignment for GI: 254780360 and conserved domain: PRK04375
>PRK04375 protoheme IX farnesyltransferase; Provisional.
Probab=100.00 E-value=0 Score=520.63 Aligned_cols=287 Identities=49% Similarity=0.876 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHH
Q ss_conf 65379999996268999999999999997089-89989999999999999999998863306612013712107056653
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLG 83 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g 83 (305)
T Consensus 13 r~~lk~y~~L~Kp~i~~l~~~t~~~g~~lA~~~~~~~~~~~~~~~g~~l~~~aa~~~N~~~d~diD~~m~RT~~RPlpsG 92 (303)
T PRK04375 13 RATFKDYLALTKPRVVSLNLFTALVGMLLAPPGLVNPPLLLLTLLGIALGAGAAGALNNYIDRDIDAIMERTKNRPLVTG 92 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 42099999996399999999999999999567899999999999999999999999977721041667888899852158
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
Q ss_conf 04789899988887766899988634458999999988865444544310266560588887766422110132368856
Q gi|254780360|r 84 QISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVS 163 (305)
Q Consensus 84 ~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~ 163 (305)
T Consensus 93 ~is~~~a~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~~Y~~iYt~~lKR~t~~~~~vGgi~Ga~ppl~Gw~Av~g~~~ 172 (303)
T PRK04375 93 RISPREALVFGLVLGVLGFLLLWLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSIS 172 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 87899999999999999999999998899999999999988875349987155244699898745578888999659997
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 63211147888899999999986535666641013351243388778997434568989987642102210899999999
Q gi|254780360|r 164 IASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFF 243 (305)
Q Consensus 164 ~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali 243 (305)
T Consensus 173 ~~~~~Lf~~~~~Wq~pHf~alA~~~~~DY~~aG~~mlPv~~g~~~t~~~~~~~~~~l~~~s~~~~~~~~~g~~y~~~a~~ 252 (303)
T PRK04375 173 WEALILFLIIFLWTPPHFWALAIFRRDDYAAAGIPMLPVVHGIRVTKRQILLYTILLAAVTLLPVLVGMAGWVYLVVALL 252 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 89999999999998687899999861069867973043145759899999999999999998999980020999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999999995048899789999987989999999999999866084
Q gi|254780360|r 244 LGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDM 293 (305)
Q Consensus 244 ~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i~~ 293 (305)
T Consensus 253 ~~~~~l~~~~~~~~~--~~~~~~ar~lF~~S~~yL~llf~~lvlD~ll~~ 300 (303)
T PRK04375 253 LGAGFLYYAWRLYRD--PDDKKWARKLFRYSINYLTLLFVALLVDHLLPL 300 (303)
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999838--896499999999999999999999999998858