HHsearch alignment for GI: 254780360 and conserved domain: PRK12873
>PRK12873 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=437.65 Aligned_cols=280 Identities=19% Similarity=0.230 Sum_probs=241.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHH
Q ss_conf 65379999996---26899999999999999708-989989999999999999999998863306612013712107056
Q gi|254780360|r 5 VFRLNFFIVLL---KPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPI 80 (305)
Q Consensus 5 ~~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~-~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl 80 (305)
T Consensus 7 ~~kl~~y~~L~RldkP~G~~LLl~P~~~~l~la~~~~p~~~~l~lf~~G~~~mRsagC~iNDi~DrdiD~~v~RTk~RPL 86 (297)
T PRK12873 7 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPL 86 (297)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 77589999998111369899999989999998567999789999999999999875539987899662136542567752
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEC
Q ss_conf 6530478989998888776689998863---4458999999988865444544310266560588887766422110132
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVIMGLA---INWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWAS 157 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~l~~~---~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a 157 (305)
T Consensus 87 asG~vS~~~A~~~~~~l~~~~~~ll~~l~~~~~~~~l~la~~~~~~-i~~Y-Pl~KR~t~~PQ~~LG~~f~~~~l~~waa 164 (297)
T PRK12873 87 ARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPP-ILIY-PSAKRWFAYPQAILALCWGFAVLIPWAA 164 (297)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 3578538689999999999999999996504899999999999999-9998-7765531045899999999889999999
Q ss_pred CCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 368856632111--478888999999999865356666410133512433887789974345689899876421022108
Q gi|254780360|r 158 VTGDVSIASLVM--FLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASV 235 (305)
Q Consensus 158 ~~~~~~~~~~~l--~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~ 235 (305)
T Consensus 165 v~g~l~~~~~ll~~~l~~~~Wt~~yDtiYA~qD~~dD~k~GvkS~av~fG~~~~~~i~~~~~l~~~ll~~~g~~~~~-~~ 243 (297)
T PRK12873 165 AEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLALAAFIAQV-GF 243 (297)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CH
T ss_conf 80888715999999999999999999999972498799769865057765041999999999999999999998618-79
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999504889978999998798999999999999986
Q gi|254780360|r 236 TYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 236 ~yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
T Consensus 244 ~yy~~~li~~~~~~~~~~~l~--~~~~~~~~~~~~F~~N~~~G~llf~Givl~k 295 (297)
T PRK12873 244 IFWPFWLIASIGMQRDILKLF--PEKQSIKTIGNHFSNQVILGSLLLLGLILAR 295 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999961--6676768999999987999999999999618