HHsearch alignment for GI: 254780360 and conserved domain: PRK12874

>PRK12874 ubiA prenyltransferase; Reviewed.
Probab=100.00  E-value=0  Score=422.95  Aligned_cols=281  Identities=19%  Similarity=0.222  Sum_probs=245.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHC
Q ss_conf             365379999996268999999999999997089------89989999999999999999998863306612013712107
Q gi|254780360|r    4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG------HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTAS   77 (305)
Q Consensus         4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~------~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   77 (305)
T Consensus         4 ~~~ki~~~~~lik~~htiFalpfa~~~~~la~~~~~~~~~~~~~~l~~~~~a~v~aRsag~~iN~~~Dr~iD~~~~RT~~   83 (291)
T PRK12874          4 FTHKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNGTGWFGFKLLILGILAAVSARNFAMGFNRLMDRDIDKDNPRTAN   83 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             89999999999987008988999999999986327887875599999999999999999989984634275357843578


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEC
Q ss_conf             05665304789899988887766899988634458999999988865444544310266560588887766422110132
Q gi|254780360|r   78 RPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWAS  157 (305)
Q Consensus        78 RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a  157 (305)
T Consensus        84 Rpl~sG~is~~~a~~~~~~~~~~~~~-~~~~lN~l~~~ls~~~l~~-~~~Y-p~~KRft~~~~~~LG~~~~~~pl~~w~A  160 (291)
T PRK12874         84 RPSVDGRISRKGMVIFIVINALIFIV-VSYFINTLAFKLSFPFLIV-LGGY-SYFKRFSSLAHLVLGLSLGLAPIAGSVA  160 (291)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77876777999999999999999999-9999869999999999999-9999-8898365370999999988899999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             36885663211147888899999999986535666641013351243388778997434568989987642102210899
Q gi|254780360|r  158 VTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTY  237 (305)
Q Consensus       158 ~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~y  237 (305)
T Consensus       161 v~g~~~~~~~~L~~~~~~W~~gfD~iYA~qD~e~D~~~Gl~S~p~~fG~~~~l~i~~~~h~~~~i~~~~~g~~~~l~~~y  240 (291)
T PRK12874        161 VSGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWEAHLGFFA  240 (291)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             74999899999999999999999999997758649986997656886805279999999999999999999997516999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999950488997899999879899999999999998660
Q gi|254780360|r  238 GIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI  291 (305)
Q Consensus       238 li~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i  291 (305)
T Consensus       241 ~i~~~i~~~ll~y-qh~lv---~~d~~~~~~afF~~N~~iglilf~~illd~l~  290 (291)
T PRK12874        241 YLGVIVSALILLY-EHYLV---RKDFKKIDRAFFTLNGYLGIVFFIFIVLDVLF  290 (291)
T ss_pred             HHHHHHHHHHHHH-HHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999-99996---28896799999997279999999999999973