HHsearch alignment for GI: 254780360 and conserved domain: PRK12878
>PRK12878 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=448.51 Aligned_cols=277 Identities=23% Similarity=0.258 Sum_probs=236.4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHH
Q ss_conf 5379999996---268999999999999997089------8998999999999999999999886330661201371210
Q gi|254780360|r 6 FRLNFFIVLL---KPRVMSLAIYTAFVGIVLAPG------HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTA 76 (305)
Q Consensus 6 ~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~~------~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 76 (305)
T Consensus 28 ~~~~pY~~L~RldkPiG~~LL~~P~~w~l~laa~~~~~~~~~~~~~l~lf~~G~~~mRsAGCviNDi~DrdiD~~v~RTk 107 (314)
T PRK12878 28 PWLRPYARLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLPLLWHLFLFFIGAIAMRGAGCTWNDIVDRDLDAKVARTR 107 (314)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 75789999984366198999999999999998615676666279999999999999931201999889860042564456
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEE
Q ss_conf 70566530478989998888776689998863445899999998886544454431026656058888776642211013
Q gi|254780360|r 77 SRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWA 156 (305)
Q Consensus 77 ~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~ 156 (305)
T Consensus 108 ~RPLasG~iS~~~A~~f~~~l~~~~~~ll-~~ln~~~~~l~~~~l~l-v~iY-P~~KR~t~~PQ~~LGl~f~~g~l~gw~ 184 (314)
T PRK12878 108 SRPLPSGQVSRKQAKVFMVLQALVGLAVL-LQFNRFAIALGIASLAI-VAAY-PFMKRITWWPQFFLGLAFSWGALMGWA 184 (314)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78876677799999999999999999999-99859999999999999-9999-999862103799999997305888999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 23688566321114788889999999998653566664101335124338877899743456898998764210221089
Q gi|254780360|r 157 SVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVT 236 (305)
Q Consensus 157 a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~ 236 (305)
T Consensus 185 Av~g~l~~~~~lL~~a~~~Wt~~yDtiYA~qD~~DD~k~GVkStav~fG~~~~~~i~~~~~l~~~ll~~~~-~~~~~~~~ 263 (314)
T PRK12878 185 ATFGSLSWAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGEHTKTWLVLLYGLAVVLMGAAF-ALARAPLL 263 (314)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 71688766999999999999999999997314765987699731578543729999999999999999999-99852299
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999995048899789999987989999999999999866
Q gi|254780360|r 237 YGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHL 290 (305)
Q Consensus 237 yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~ 290 (305)
T Consensus 264 ~~~~~~~~~~~l~~-q---~~~~~~~~~~~~~~~Fk~N~~~G~iif~gi~~~~L 313 (314)
T PRK12878 264 ALLGLLAAAAHLAW-Q---IVRLDIDDPAQCLRLFKSNRDAGLLIFAGLVVGGL 313 (314)
T ss_pred HHHHHHHHHHHHHH-H---HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999-9---99817998899999999819999999999998543