HHsearch alignment for GI: 254780360 and conserved domain: PRK12882
>PRK12882 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=391.25 Aligned_cols=272 Identities=21% Similarity=0.254 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHH
Q ss_conf 5379999996268999999999999997089-899899999999999999999988633066120137121070566530
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQ 84 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~ 84 (305)
T Consensus 2 m~lk~y~~L~kp~~~~l~~~t~~~G~~la~~~~~~~~~~~~~~~~~~l~~~a~~~iNd~~D~eiD~in~--p~RPlpsG~ 79 (276)
T PRK12882 2 MSVRGYLELMRPGNAVVAGLAAFIGALIAGGILTSPADSGLAFAAVLLVTGAGNAINDYFDREIDKINR--PDRPIPSGA 79 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCC
T ss_conf 958999999569899999999999999975889968999999999999999999998475160057889--999887688
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCC
Q ss_conf 47898999888877668999886344589999999888654445443102665605888877664221101323688566
Q gi|254780360|r 85 ISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSI 164 (305)
Q Consensus 85 is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~~ 164 (305)
T Consensus 80 Is~~~Al~~~~~l~~~~~~l-~~~~n~~~~~~~l~~~~~~-~iYs~~lKr~~~~~ni~ig~~~g~~~l~g~~~~~~~~~~ 157 (276)
T PRK12882 80 VSPKGALAYSVLLFAAGVAL-AFLLNPLCLAIALFNSLLL-ILYAQTLKGTPGLGNASVAYLTGSTFLFGGAAVGLEGLL 157 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 59999999999999999999-9999999999999999999-999999987766068999998889999999998376328
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 32111478888999999999865356666410133512433887789974345689899876421022108999999999
Q gi|254780360|r 165 ASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFL 244 (305)
Q Consensus 165 ~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali~ 244 (305)
T Consensus 158 ~~~~l~~~~f~~~~~~~~~~d~~d~egD~~~Gi~tlPv~~G~~~t~~~~~~~~~~~~~~sllp~~~~~~g~~Yl~~~~~~ 237 (276)
T PRK12882 158 ALLVLFALAALATLAREIVKDAEDIEGDRAEGARTLPIVIGVRKASYLAAAFVLGAVLASPVPYLLSIWGLWYLVLVAPA 237 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999989778899769962050137688999999999999999999999987219999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999995048899789999987989999999999
Q gi|254780360|r 245 GYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTI 284 (305)
Q Consensus 245 ~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~ 284 (305)
T Consensus 238 ~~~~l~~~~~~~---~~~~~~~a~~~~k~s~~~~~l~F~~ 274 (276)
T PRK12882 238 DLVILFAAIRGL---SCTDPTKSSKLLKAGMFAALAAFVV 274 (276)
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999983---7999999999999999999999996