HHsearch alignment for GI: 254780360 and conserved domain: PRK12883
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed.
Probab=100.00 E-value=0 Score=329.22 Aligned_cols=269 Identities=18% Similarity=0.250 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHH
Q ss_conf 5379999996268999999999999997089-899899999999999999999988633066120137121070566530
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQ 84 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~ 84 (305)
T Consensus 1 m~lk~yleL~Rp~n~~~a~~~~~~g~~ia~~~~~~~~~~~l~~l~~~~~~aag~~iND~~D~eiD~iN~--p~RPipsG~ 78 (275)
T PRK12883 1 MEVKAFIEIMRPHNCILAGIVGILGSLVAYEGIPDIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINR--PNRPLPRGA 78 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCC
T ss_conf 968999999728778999999999999984689978999999999999999999998588884054558--999887776
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCC
Q ss_conf 47898999888877668999886344589999999888654445443102665605888877664221101323688566
Q gi|254780360|r 85 ISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSI 164 (305)
Q Consensus 85 is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~~ 164 (305)
T Consensus 79 IS~~~A~~~~~~l~~~g~~l-~~~ln~~~~~l~~~~~~l-~~~Ys~~lK~~~l~gNi~va~~~g~~~l~g~~a~-g~~~~ 155 (275)
T PRK12883 79 MSRKAALYYSVLQYAIGLAL-AYFLNIWAFLFALIAYVL-TFIYAWKLKPLPFIGNVVVALLTAATPIYGAVGV-GRIGL 155 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCH
T ss_conf 68999999999999999999-999739999999999999-9998998665885599999999999999999995-75409
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 32111478888999999999865356666410133512433887789974345689899876421022108999999999
Q gi|254780360|r 165 ASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFL 244 (305)
Q Consensus 165 ~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali~ 244 (305)
T Consensus 156 -~~~l~~~afl~~l~reivkdieD~egD~~~G~~TlPi~~G~~~a~~ia~~~~~l~~~~s~lp~~~g~-~~~y~~~-i~v 232 (275)
T PRK12883 156 -AGYLAICAFLVNVSREIMKDIEDIEGDMAKGAKTLPIIIGKKRAAYIGAIFGFLTVIASFLPVKVGI-GLGYLPI-IPV 232 (275)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHH
T ss_conf -9999999999999999999999861098769957378946797999999999999999999999977-3999999-999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999995048899789999987989999999999
Q gi|254780360|r 245 GYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTI 284 (305)
Q Consensus 245 ~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~ 284 (305)
T Consensus 233 ~~~~~~~~~~~~~--~~~~a~~~~~~lk~~m~l~liaf~~ 270 (275)
T PRK12883 233 DAMILKASIDVLR--DPETAHKGQKLLKIATFLAVISFLI 270 (275)
T ss_pred HHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999964--9222699999999999999999999