HHsearch alignment for GI: 254780360 and conserved domain: PRK12884
>PRK12884 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=393.74 Aligned_cols=279 Identities=18% Similarity=0.265 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHH
Q ss_conf 3653799999962689999999999999970898-998999999999999999999886330661201371210705665
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH-ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPL 82 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~-~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~ 82 (305)
T Consensus 1 m~sklk~y~~L~rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~l~~~l~~~a~~~iNd~~D~diD~~n~--~~RPlps 78 (281)
T PRK12884 1 LRAKLKAYLDLLRPEHGLMAGIAVVLGAILALGFLPDLTKALLGFLSAFFASASAFALNDYFDVEIDRINR--PDRPIPS 78 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC--CCCCCCC
T ss_conf 92789999999658778999999999999976799978999999999999999998853624084250068--9998888
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCC
Q ss_conf 30478989998888776689998863445899999998886544454431026656058888776642211013236885
Q gi|254780360|r 83 GQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV 162 (305)
Q Consensus 83 g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~ 162 (305)
T Consensus 79 G~is~~~A~~~~~~l~~~~~~~-~~~l~~~~~~l~~~~~~~-~~~Y~~~lK~~~~~~~~~~~~~~g~~~l~g~~a~~~~~ 156 (281)
T PRK12884 79 GRVSLREALLLAIALFILGIVA-AYLISPLAFAVVVLVLVL-GILYDYKLKEYGLIGNLYVAFLTGMTFIFGGIAAGELI 156 (281)
T ss_pred CEECHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6278999999999999999999-999999999999999999-99999999957653599999999999999999973897
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 66321114788889999999998653566664101335124338877899743456898998764210221089999999
Q gi|254780360|r 163 SIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVF 242 (305)
Q Consensus 163 ~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~al 242 (305)
T Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~Gi~tlpv~~G~~~a~~~~~~~~i~~~~l~~~~~~~~~~g~~y~~~~~ 236 (281)
T PRK12884 157 TEKSWLLAAMAFLMDLGREIAKDIEDVEGDRKRGARTLAILYGEKIAGRIAAALFIIAVALSPIPYLLGWLNYLYLAPIL 236 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 59999999999999999999998052541987699267732778989999999999999999999999850199999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999504889978999998798999999999999986
Q gi|254780360|r 243 FLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 243 i~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
T Consensus 237 ~~~~~~l~~~~~l~---~~~~~~~~~~~~~~~~~~m~l~~iaf~iga 280 (281)
T PRK12884 237 LADLIFLYSAYRLL---RSQDRETINKIRRITLTGMLLALVAFAIGA 280 (281)
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999992---499999999999999999999999999837