HHsearch alignment for GI: 254780360 and conserved domain: PRK12886
>PRK12886 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=469.81 Aligned_cols=283 Identities=20% Similarity=0.219 Sum_probs=253.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHH
Q ss_conf 0365379999996268999999999999997089-899899999999999999999988633066120137121070566
Q gi|254780360|r 3 FQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIP 81 (305)
Q Consensus 3 ~~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~ 81 (305)
T Consensus 3 ~~~~kik~yl~l~k~~~t~~~l~~a~~g~~lA~~g~p~~~~l~~~~lg~~~~rsag~~iN~i~D~diD~~~~RT~~RPL~ 82 (291)
T PRK12886 3 NFFTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGTPGASQLDWILMAMVGARTAAMGFNRIIDAEIDAKNPRTAGRAIP 82 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 18999999999970514999999999999997578998999999999999999999999989876204689666788764
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCC
Q ss_conf 53047898999888877668999886344589999999888654445443102665605888877664221101323688
Q gi|254780360|r 82 LGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGD 161 (305)
Q Consensus 82 ~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~ 161 (305)
T Consensus 83 sG~is~~~a~~~~~~~~~~~-~~~~~~ln~l~~~l~~~~~~-~~~~Y-p~~KR~t~~~~~vlG~~~~~~pl~gw~Av~g~ 159 (291)
T PRK12886 83 AGLISKGSALLFIVLSSLLF-LFAAWFLNPLCLLLSPPALF-FLLLY-SYCKRFTALAHVVLGFCLALAPLGAWIAIRGT 159 (291)
T ss_pred CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 68969999999999999999-99999987999999999999-99999-99986563108999999863688999998189
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 56632111478888999999999865356666410133512433887789974345689899876421022108999999
Q gi|254780360|r 162 VSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIV 241 (305)
Q Consensus 162 ~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~a 241 (305)
T Consensus 160 ~~~~~~lL~~~~~~W~~~~d~~ya~~D~edD~k~Gv~Slpv~fG~~~~~~i~~~~~~~~v~~~~~~~~~~~lg~~y~~~~ 239 (291)
T PRK12886 160 IELPAILLGLGVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLAGL 239 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999999998999997076298769974368857285899999999999999999999985059999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999950488997899999879899999999999998660
Q gi|254780360|r 242 FFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 (305)
Q Consensus 242 li~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i 291 (305)
T Consensus 240 ~~~~~~l~y~~---~l~~~~d~~~~~~afF~~N~~ig~~lf~~illD~l~ 286 (291)
T PRK12886 240 AVTGYMLLYEH---WLLRGGDLTRLDAAFFQMNGYISVTLFAATLFDRLF 286 (291)
T ss_pred HHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999---990789869999999998499999999999999999