HHsearch alignment for GI: 254780360 and conserved domain: PRK12888
>PRK12888 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=425.77 Aligned_cols=281 Identities=20% Similarity=0.191 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHH
Q ss_conf 65379999996268999999---9999999970-8989989999999999999999998863306612013712107056
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAI---YTAFVGIVLA-PGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPI 80 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~---~~~~~g~~la-~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl 80 (305)
T Consensus 24 p~klr~yl~Lir~~h~if~lpf~~~~~~~a~~a~~g~p~~~~l~~~~lg~v~~RsAgc~iNdi~DrdiD~~v~RTk~RPL 103 (313)
T PRK12888 24 PGRVRAFLRLVAIEHSVFALPFAYIAALTAMFAADRSVHWGDLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 103 (313)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 47799999999854809999999999999998617999999999999999999999999997744342567955578876
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCC
Q ss_conf 65304789899988887766899988634458999999988865444544310266560588887766422110132368
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTG 160 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~ 160 (305)
T Consensus 104 ~sG~is~~~A~~~~~~~~~~~~~-~~~~ln~l~~~ls~~~~~~-~~~Y-p~~KRfT~~pq~~LG~a~~~~~l~~w~Av~g 180 (313)
T PRK12888 104 VTGAVSVRTAWTGALVALAVFLG-AAALLNPLCLALAPLAVAP-LVVY-PYAKRFTNFPHAVLGLAQAVGPVGAWIAVTG 180 (313)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56886799999999999999999-9999989999999999999-9999-9998876545799999999878899999728
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 85663211147888899999999986535666641013351243388778997434568989987642102210899999
Q gi|254780360|r 161 DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGII 240 (305)
Q Consensus 161 ~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ 240 (305)
T Consensus 181 ~~~~~~~lL~~~~~~W~~~fDtiYA~qD~edD~k~Gi~S~a~~fG~~~~l~i~~~~~~~~~~ll~~~g~~~~l~~~y~~g 260 (313)
T PRK12888 181 TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWGSRVAHVVTFALFVWFGLATGAGALWWAG 260 (313)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 88789999999999999999898787165329874998527886850279999999999999999999997380999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999950488997899999-8798999999999999986608
Q gi|254780360|r 241 VFFLGYHFTLWAWRTFLCKEDKDIRVTKKL-FLESITYLFVLFTILMVDHLID 292 (305)
Q Consensus 241 ali~~~~~l~~a~~~~~~~~~~~~k~a~kl-F~~S~~yl~ilfl~liid~~i~ 292 (305)
T Consensus 261 ~~~~~~ll~yq-~~l---i~~~d~~~~~~aFF~~N~~vglilf~~~l~d~llr 309 (313)
T PRK12888 261 LLLTAVAFAYE-HRI---VSPTDLSRVNRAFFTANGFIGIALFGFALGDLLVR 309 (313)
T ss_pred HHHHHHHHHHH-HHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999-999---27888899999999850399999999999999975