HHsearch alignment for GI: 254780360 and conserved domain: PRK13591
>PRK13591 ubiA prenyltransferase; Provisional.
Probab=98.08 E-value=3.8e-07 Score=61.58 Aligned_cols=147 Identities=16% Similarity=0.043 Sum_probs=75.0
Q ss_pred HHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 9998863306612013712107056653047898999888877668999886344589999999888654445443----
Q gi|254780360|r 56 ASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIW---- 131 (305)
Q Consensus 56 a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~---- 131 (305)
T Consensus 73 svYtLdRald~eEDaiNr--~El~g~nk~i----gl~~sl~afl~g~~il~~~Gil---~~~f~Pli~-GylYSkgikig 142 (304)
T PRK13591 73 SVYTLDRALDSEEDAVNR--KELIGSNKKI----GLAVSLLAFLIGTYILAREGML---LLAFLPLIT-GYLYSKGIKIG 142 (304)
T ss_pred EEEEECCCCCCHHHCCCC--HHHCCCCCHH----HHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHE-EEEECCCCEEE
T ss_conf 998721122760210451--7650753102----4999999999999998856327---544655631-10221461231
Q ss_pred -----HHCCCCCCHHHHHHHHHHHHHH--EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf -----1026656058888776642211--013236885663211147888899999999986535666641013351243
Q gi|254780360|r 132 -----LKRFTPQNIVIGGIAGAIPPMI--GWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVV 204 (305)
Q Consensus 132 -----lKR~t~~~~~~~~i~ga~~~l~--g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~ 204 (305)
T Consensus 143 k~~~KLKgg~gvKniIVg~tWg~~iA~l~~~~~--~s~~~v~i-Vf~FFg~klFINS~V~DfkDVkGD~~AGIkTLP~~L 219 (304)
T PRK13591 143 KFALKLKGGLGVKNIVVGITWGAFIAGLAGSYC--GSMLPVVL-VFLFFGVKLFINSAIYDFKDIKGDTLAGIKTLPVSL 219 (304)
T ss_pred EEEEEECCCCCCEEEEEEEECCCHHHHHHHHCC--CCCCHHHH-HHHHHHHHHHHHHHHCCCHHCCCCHHCCCCCCCHHH
T ss_conf 015885277762048998751322666534202--56414578-899998999875231002103664430700076231
Q ss_pred HHHHHHHHHHH
Q ss_conf 38877899743
Q gi|254780360|r 205 TDRTTKMHILI 215 (305)
Q Consensus 205 G~k~t~~~i~~ 215 (305)
T Consensus 220 G~~~Tr~~L~~ 230 (304)
T PRK13591 220 GEQKTRNLLLG 230 (304)
T ss_pred CCHHHHHHHHH
T ss_conf 63256649999