HHsearch alignment for GI: 254780360 and conserved domain: TIGR01473
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase; InterPro: IPR006369 This family describes protoheme IX farnesyltransferase, also called haeme O synthase, an enzyme that creates an intermediate in the biosynthesis of haeme A . Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor. ; GO: 0008495 protoheme IX farnesyltransferase activity, 0006783 heme biosynthetic process, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=544.58 Aligned_cols=281 Identities=44% Similarity=0.756 Sum_probs=268.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHH
Q ss_conf 99999962689999999999999970898-------99899999999999999999988633066120137121070566
Q gi|254780360|r 9 NFFIVLLKPRVMSLAIYTAFVGIVLAPGH-------ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIP 81 (305)
Q Consensus 9 ~~y~~L~kp~~~~~~~~~~~~g~~la~~~-------~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~ 81 (305)
T Consensus 1 k~y~~LtKp~~~~L~~~t~~~G~~lA~~~~~~~~~~~~~~~~~~~~~G~~L~~~~A~a~N~~~DrdiD~~M~RT~~RP~v 80 (297)
T TIGR01473 1 KDYLQLTKPRVISLLLITAFAGMWLASGGADKLSFLVNLPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLV 80 (297)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 93377886789999999999998762256665431116899999999999999998797212146610017564568854
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCC
Q ss_conf 53047898999888877668999886344589999999888654445443102665605888877664221101323688
Q gi|254780360|r 82 LGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGD 161 (305)
Q Consensus 82 ~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~ 161 (305)
T Consensus 81 ~G~~~p~~al~fg~~l~~~g~~~L~~~~N~l~A~l~~~g~f~Yv~~YT~~lKR~t~~NtviGg~~Ga~PpliGw~Av~g~ 160 (297)
T TIGR01473 81 TGRISPREALAFGLLLGVLGVALLAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGS 160 (297)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCC
T ss_conf 36666667999999999999999999873999999999999888775120357421354253065121342404010699
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCC---H
Q ss_conf 5663211147888899999999986535666641013351243388778997434---568989987642102210---8
Q gi|254780360|r 162 VSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIY---TVLTSIVGVLPTMLGFAS---V 235 (305)
Q Consensus 162 ~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~y---si~~~llsll~~~~~~~g---~ 235 (305)
T Consensus 161 ~~~~~~~L~~i~F~WqPpHFwaLA~~~~dDY~~A~iPMLPvv~g~~~t~~~I~~yC~~~~~L~~~~~~~~~~~~~g~~g~ 240 (297)
T TIGR01473 161 ISLEAWLLFAIIFLWQPPHFWALALKYKDDYAAAGIPMLPVVKGERITKRQIALYCVYTAALFPVSLLLYFLGATGYLGW 240 (297)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 88789999999998767889999976578886289510454162799999999999999999999999987400020579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999995048---89978999998798999999999999986
Q gi|254780360|r 236 TYGIIVFFLGYHFTLWAWRTFLCKE---DKDIRVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 236 ~yli~ali~~~~~l~~a~~~~~~~~---~~~~k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
T Consensus 241 ~Y~~~a~~l~a~~l~~~~~~~~~~~~~~~~~~kwA~k~F~~S~~yL~~~f~~~~~~~ 297 (297)
T TIGR01473 241 LYLIVATLLGALFLYLALKFYRDPDNYSGDRKKWARKLFKFSLIYLALLFLALLIDS 297 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999988444156788714568876416899999999999976179