HHsearch alignment for GI: 254780360 and conserved domain: TIGR01474
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase; InterPro: IPR006370 These sequences are a family of integral membrane proteins that condense para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in Escherichia coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterised members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterised members IPR006371 from INTERPRO .; GO: 0004659 prenyltransferase activity, 0009058 biosynthetic process, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=459.01 Aligned_cols=274 Identities=24% Similarity=0.260 Sum_probs=241.1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCH
Q ss_conf 79999996---268999999999999997089------899899999999999999999988633066120137121070
Q gi|254780360|r 8 LNFFIVLL---KPRVMSLAIYTAFVGIVLAPG------HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASR 78 (305)
Q Consensus 8 ~~~y~~L~---kp~~~~~~~~~~~~g~~la~~------~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 78 (305)
T Consensus 1 l~~Y~~L~R~DkP~G~lLLl~P~~W~~~LAA~~~~~s~~p~~~~L~~F~~G~~lMRgAGCviND~~DR~~D~~VeRTk~R 80 (291)
T TIGR01474 1 LLPYAKLMRADKPIGTLLLLLPCLWSILLAAQAYDASGLPPLLLLALFTVGAILMRGAGCVINDIVDRDFDKQVERTKSR 80 (291)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 93899997255769999999999999999865206788860899999999999986404343304624004334000037
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECC
Q ss_conf 56653047898999888877668999886344589999999888654445443102665605888877664221101323
Q gi|254780360|r 79 PIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASV 158 (305)
Q Consensus 79 Pl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~ 158 (305)
T Consensus 81 PLasG~vs~~~A~~~~~~~~l~~l~~L-l~LN~~ti~Lgv~sL~l-v~~Y-P~~KR~t~~PQ~~LGlaF~wGalmg~~A~ 157 (291)
T TIGR01474 81 PLASGAVSVRQAILFLLVQLLVALGVL-LQLNSLTILLGVASLAL-VAIY-PFMKRITYWPQLVLGLAFGWGALMGWAAV 157 (291)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHH-CCHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 874663118999999999999999999-87557999998999999-9980-11320151579999999843588778786
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC--C
Q ss_conf 68--856632111478888999999999865356666410133512433887-789974345689899876421022--1
Q gi|254780360|r 159 TG--DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRT-TKMHILIYTVLTSIVGVLPTMLGF--A 233 (305)
Q Consensus 159 ~~--~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~-t~~~i~~ysi~~~llsll~~~~~~--~ 233 (305)
T Consensus 158 ~G~~~l~~~a~~LY~a~i~Wt~~YDTiYA~~Dk~DD~kiGvkStA~~FG~~~Pk~~l~~l~-~~~i~lL~~aG~~~~ll~ 236 (291)
T TIGR01474 158 QGVMDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDLKIGVKSTALRFGDNTPKPWLGGLY-ALMILLLALAGLIAGLLL 236 (291)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 1667876889999999999999986887532706467714289988740478178999999-999999999999988875
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 08999999999999999999999504889978999--998798999999999999986
Q gi|254780360|r 234 SVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTK--KLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 234 g~~yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~--klF~~S~~yl~ilfl~liid~ 289 (305)
T Consensus 237 ~~~yy~~l~~a~~~l~~----Qi~~l~~~~P~~C~yG~~F~~N~~vG~~~f~gi~l~~ 290 (291)
T TIGR01474 237 GPVYYLGLAAAALLLIR----QIATLDIRDPENCLYGKLFKANNYVGLLLFAGIVLGL 290 (291)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 48999999999999999----9888851678101687786502089999999999842