HHsearch alignment for GI: 254780360 and conserved domain: TIGR02235
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase; InterPro: IPR011937 This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I . The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility..
Probab=98.52 E-value=7.6e-05 Score=47.92 Aligned_cols=236 Identities=17% Similarity=0.161 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHCCCHHHHCHHHHHHH
Q ss_conf 62689999999999999970---898998999999999999999999886330661-------20137121070566530
Q gi|254780360|r 15 LKPRVMSLAIYTAFVGIVLA---PGHISVLKSVISIFAIAMGAGASGALNMYYDAD-------IDKMMARTASRPIPLGQ 84 (305)
Q Consensus 15 ~kp~~~~~~~~~~~~g~~la---~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~-------iD~~~~RT~~RPl~~g~ 84 (305)
T Consensus 6 iK~PlYsVAv~Pi~~g~A~a~~~~g~~~~~~f~~FL~aaililaW~NLtNDvFDs~TGiD~~K~HS~V~LTG~r~lv~~- 84 (293)
T TIGR02235 6 IKPPLYSVAVMPILVGTAVALGKGGVVHLDRFVLFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLVFW- 84 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHH-
T ss_conf 2521457889988999899987077300488999999999999998406762124567551014443564164068999-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHCCCCC--CHHHHHHHHHHHHHHEEEC--
Q ss_conf 47898999888877668999886344-589999999888654445--4431026656--0588887766422110132--
Q gi|254780360|r 85 ISPWEAWVLGVSLAVSSIVIMGLAIN-WVSATLLFMSIFCYVVIY--TIWLKRFTPQ--NIVIGGIAGAIPPMIGWAS-- 157 (305)
Q Consensus 85 is~~~a~~~~~~l~~~~~~~l~~~~n-~~~~~l~~~~~~~y~~iY--tp~lKR~t~~--~~~~~~i~ga~~~l~g~~a-- 157 (305)
T Consensus 85 ----~~-n~~Ll~Gl~~i~~ls~~~~D~~Vl~Lv~~~cfL-GY~YQGPPF--RLGY~GLGEpiC~~~--FGPlA~AAA~~ 154 (293)
T TIGR02235 85 ----LA-NFFLLIGLVGIAALSWRSQDITVLALVGLCCFL-GYLYQGPPF--RLGYQGLGEPICWLA--FGPLAIAAALY 154 (293)
T ss_pred ----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCH--HHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_conf ----99-999999999999998886238999999999997-530378742--444103138999987--50899999998
Q ss_pred -CCC---CCCCCCCC----HHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -368---85663211----1478888999-----9999998653566664101335124338877899743456898998
Q gi|254780360|r 158 -VTG---DVSIASLV----MFLIIFLWTP-----PHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVG 224 (305)
Q Consensus 158 -~~~---~~~~~~~~----l~~~~~~W~~-----~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~lls 224 (305)
T Consensus 155 ~q~~~~~~~~~~~w~~~i~~G~G~~~~TtliLFCsHF-----HQv~dD~a~GK~sP~VRLGt~~~A~~~~w~~~~~Y~~~ 229 (293)
T TIGR02235 155 AQSQSVISFSLIPWKAAILVGAGSALATTLILFCSHF-----HQVEDDLAHGKRSPVVRLGTKRAAKIVPWVILLLYVVL 229 (293)
T ss_pred HHCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CCHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 7265520231135787888437168999999984234-----64167874389887210135558889999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-CHHHHH
Q ss_conf 7642102210899999999999999999999950488-9-978999
Q gi|254780360|r 225 VLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKED-K-DIRVTK 268 (305)
Q Consensus 225 ll~~~~~~~g~~yli~ali~~~~~l~~a~~~~~~~~~-~-~~k~a~ 268 (305)
T Consensus 230 ~~~v~~G~~P~~~--LL~l~s~P~A~~Li~~~~~~h~~P~~i~n~K 273 (293)
T TIGR02235 230 LIAVIGGFLPWTT--LLALASLPWAVKLIRLLKQNHNKPEQIKNSK 273 (293)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCHHHCCH
T ss_conf 9999862646999--9999600389999999987535850454137