HHsearch alignment for GI: 254780360 and conserved domain: TIGR02235

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase; InterPro: IPR011937 This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I . The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility..
Probab=98.52  E-value=7.6e-05  Score=47.92  Aligned_cols=236  Identities=17%  Similarity=0.161  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHCCCHHHHCHHHHHHH
Q ss_conf             62689999999999999970---898998999999999999999999886330661-------20137121070566530
Q gi|254780360|r   15 LKPRVMSLAIYTAFVGIVLA---PGHISVLKSVISIFAIAMGAGASGALNMYYDAD-------IDKMMARTASRPIPLGQ   84 (305)
Q Consensus        15 ~kp~~~~~~~~~~~~g~~la---~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~-------iD~~~~RT~~RPl~~g~   84 (305)
T Consensus         6 iK~PlYsVAv~Pi~~g~A~a~~~~g~~~~~~f~~FL~aaililaW~NLtNDvFDs~TGiD~~K~HS~V~LTG~r~lv~~-   84 (293)
T TIGR02235         6 IKPPLYSVAVMPILVGTAVALGKGGVVHLDRFVLFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLVFW-   84 (293)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHH-
T ss_conf             2521457889988999899987077300488999999999999998406762124567551014443564164068999-


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHCCCCC--CHHHHHHHHHHHHHHEEEC--
Q ss_conf             47898999888877668999886344-589999999888654445--4431026656--0588887766422110132--
Q gi|254780360|r   85 ISPWEAWVLGVSLAVSSIVIMGLAIN-WVSATLLFMSIFCYVVIY--TIWLKRFTPQ--NIVIGGIAGAIPPMIGWAS--  157 (305)
Q Consensus        85 is~~~a~~~~~~l~~~~~~~l~~~~n-~~~~~l~~~~~~~y~~iY--tp~lKR~t~~--~~~~~~i~ga~~~l~g~~a--  157 (305)
T Consensus        85 ----~~-n~~Ll~Gl~~i~~ls~~~~D~~Vl~Lv~~~cfL-GY~YQGPPF--RLGY~GLGEpiC~~~--FGPlA~AAA~~  154 (293)
T TIGR02235        85 ----LA-NFFLLIGLVGIAALSWRSQDITVLALVGLCCFL-GYLYQGPPF--RLGYQGLGEPICWLA--FGPLAIAAALY  154 (293)
T ss_pred             ----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCH--HHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_conf             ----99-999999999999998886238999999999997-530378742--444103138999987--50899999998


Q ss_pred             -CCC---CCCCCCCC----HHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -368---85663211----1478888999-----9999998653566664101335124338877899743456898998
Q gi|254780360|r  158 -VTG---DVSIASLV----MFLIIFLWTP-----PHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVG  224 (305)
Q Consensus       158 -~~~---~~~~~~~~----l~~~~~~W~~-----~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~lls  224 (305)
T Consensus       155 ~q~~~~~~~~~~~w~~~i~~G~G~~~~TtliLFCsHF-----HQv~dD~a~GK~sP~VRLGt~~~A~~~~w~~~~~Y~~~  229 (293)
T TIGR02235       155 AQSQSVISFSLIPWKAAILVGAGSALATTLILFCSHF-----HQVEDDLAHGKRSPVVRLGTKRAAKIVPWVILLLYVVL  229 (293)
T ss_pred             HHCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CCHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             7265520231135787888437168999999984234-----64167874389887210135558889999999999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-CHHHHH
Q ss_conf             7642102210899999999999999999999950488-9-978999
Q gi|254780360|r  225 VLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKED-K-DIRVTK  268 (305)
Q Consensus       225 ll~~~~~~~g~~yli~ali~~~~~l~~a~~~~~~~~~-~-~~k~a~  268 (305)
T Consensus       230 ~~~v~~G~~P~~~--LL~l~s~P~A~~Li~~~~~~h~~P~~i~n~K  273 (293)
T TIGR02235       230 LIAVIGGFLPWTT--LLALASLPWAVKLIRLLKQNHNKPEQIKNSK  273 (293)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCHHHCCH
T ss_conf             9999862646999--9999600389999999987535850454137