Query gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 305
No_of_seqs 135 out of 2742
Neff 7.3
Searched_HMMs 39220
Date Sun May 29 15:26:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780360.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01473 cyoE_ctaB protoheme 100.0 0 0 544.6 25.8 281 9-289 1-297 (297)
2 PRK13362 protoheme IX farnesyl 100.0 0 0 520.4 30.3 292 5-297 10-302 (306)
3 PRK04375 protoheme IX farnesyl 100.0 0 0 520.6 29.3 287 5-293 13-300 (303)
4 COG0109 CyoE Polyprenyltransfe 100.0 0 0 512.2 24.8 286 4-292 14-300 (304)
5 PRK12869 ubiA prenyltransferas 100.0 0 0 492.3 27.9 278 8-288 1-278 (278)
6 PRK12886 ubiA prenyltransferas 100.0 0 0 469.8 28.8 283 3-291 3-286 (291)
7 PRK12847 ubiA prenyltransferas 100.0 0 0 460.8 26.2 277 4-288 3-284 (284)
8 PRK12870 ubiA prenyltransferas 100.0 0 0 455.2 27.0 279 6-291 7-289 (289)
9 PRK12848 ubiA 4-hydroxybenzoat 100.0 0 0 454.5 26.8 277 5-289 2-282 (282)
10 PRK12877 consensus 100.0 0 0 455.2 25.5 278 6-291 1-283 (283)
11 TIGR01474 ubiA_proteo 4-hydrox 100.0 0 0 459.0 22.0 274 8-289 1-290 (291)
12 PRK12878 ubiA prenyltransferas 100.0 0 0 448.5 26.1 277 6-290 28-313 (314)
13 PRK12873 ubiA prenyltransferas 100.0 0 0 437.7 27.7 280 5-289 7-295 (297)
14 PRK12894 consensus 100.0 0 0 431.7 26.3 277 5-289 1-281 (282)
15 PRK12888 ubiA prenyltransferas 100.0 0 0 425.8 26.6 281 5-292 24-309 (313)
16 PRK12874 ubiA prenyltransferas 100.0 0 0 423.0 27.7 281 4-291 4-290 (291)
17 PRK12895 ubiA prenyltransferas 100.0 0 0 422.8 27.0 282 6-294 1-285 (286)
18 PRK13106 ubiA prenyltransferas 100.0 0 0 410.5 25.2 280 4-294 11-299 (299)
19 PRK12884 ubiA prenyltransferas 100.0 0 0 393.7 27.6 279 4-289 1-280 (281)
20 PRK12882 ubiA prenyltransferas 100.0 0 0 391.3 27.8 272 6-284 2-274 (276)
21 PRK12876 ubiA prenyltransferas 100.0 0 0 386.0 25.1 280 6-291 1-297 (299)
22 TIGR01475 ubiA_other 4-hydroxy 100.0 0 0 380.2 26.1 279 7-290 1-300 (301)
23 PRK09573 (S)-2,3-di-O-geranylg 100.0 0 0 374.1 27.2 277 6-291 1-279 (280)
24 KOG1380 consensus 100.0 0 0 389.9 7.0 281 7-292 93-373 (409)
25 PRK13593 consensus 100.0 0 0 364.4 27.8 271 5-284 5-276 (283)
26 PRK12871 ubiA prenyltransferas 100.0 0 0 341.9 23.5 277 4-290 1-296 (297)
27 PRK12883 ubiA prenyltransferas 100.0 0 0 329.2 27.6 269 6-284 1-270 (275)
28 COG0382 UbiA 4-hydroxybenzoate 100.0 0 0 329.0 26.4 278 5-289 10-288 (289)
29 KOG1381 consensus 100.0 0 0 347.5 9.7 279 6-292 62-347 (353)
30 PRK13594 consensus 100.0 0 0 298.5 26.6 266 7-280 2-270 (278)
31 PRK07566 bacteriochlorophyll/c 100.0 9E-37 2.3E-41 237.2 19.5 247 5-257 18-275 (308)
32 pfam01040 UbiA UbiA prenyltran 100.0 1E-34 2.6E-39 225.1 21.6 231 23-257 4-236 (258)
33 TIGR01476 chlor_syn_BchG bacte 100.0 4.2E-32 1.1E-36 209.5 16.4 242 9-254 1-262 (295)
34 PRK12392 bacteriochlorophyll c 100.0 5.8E-30 1.5E-34 196.9 12.5 205 5-213 9-229 (331)
35 PRK06080 1,4-dihydroxy-2-napht 100.0 3.5E-26 9E-31 174.4 26.5 282 4-289 5-299 (300)
36 PRK12887 ubiA tocopherol phyty 100.0 4.7E-26 1.2E-30 173.7 24.4 204 5-213 11-232 (309)
37 PRK12324 phosphoribose diphosp 99.9 7.6E-23 1.9E-27 154.7 25.4 177 6-192 2-181 (288)
38 PRK13387 1,4-dihydroxy-2-napht 99.9 8.1E-22 2.1E-26 148.5 25.7 280 6-290 1-316 (317)
39 PRK05951 ubiA prenyltransferas 99.9 1.3E-21 3.4E-26 147.3 26.1 279 5-291 1-294 (296)
40 PRK12872 ubiA prenyltransferas 99.9 5.1E-22 1.3E-26 149.7 23.9 213 44-261 49-266 (297)
41 PRK08238 hypothetical protein; 99.9 1E-21 2.7E-26 147.9 23.6 172 5-186 190-364 (481)
42 PRK13105 ubiA prenyltransferas 99.9 2.6E-21 6.6E-26 145.5 18.8 273 4-288 5-287 (291)
43 PRK07419 1,4-dihydroxy-2-napht 99.8 1E-17 2.5E-22 124.3 24.1 280 5-292 9-303 (304)
44 COG1575 MenA 1,4-dihydroxy-2-n 99.8 2.6E-17 6.6E-22 121.8 24.1 286 1-289 1-301 (303)
45 TIGR02056 ChlG chlorophyll syn 99.8 2.6E-19 6.6E-24 133.7 8.4 244 6-256 14-274 (306)
46 PRK12875 ubiA prenyltransferas 99.8 3E-17 7.7E-22 121.4 18.8 213 6-225 6-226 (281)
47 PRK13595 ubiA prenyltransferas 99.8 2.8E-17 7.2E-22 121.6 18.0 248 7-274 19-273 (298)
48 PRK13592 ubiA prenyltransferas 99.1 4.9E-08 1.2E-12 66.8 18.1 215 4-229 1-238 (299)
49 KOG4581 consensus 98.9 1.1E-09 2.7E-14 76.7 4.3 274 5-284 58-348 (359)
50 TIGR02235 menA_cyano-plnt 1,4- 98.5 7.6E-05 1.9E-09 47.9 21.7 236 15-268 6-273 (293)
51 PRK13591 ubiA prenyltransferas 98.1 3.8E-07 9.6E-12 61.6 -1.1 147 56-215 73-230 (304)
52 COG4147 DhlC Predicted symport 94.7 0.08 2E-06 30.0 5.2 10 178-187 371-380 (529)
53 PRK13594 consensus 94.6 0.33 8.4E-06 26.3 12.5 17 62-79 52-68 (278)
54 PRK06080 1,4-dihydroxy-2-napht 94.3 0.38 9.7E-06 26.0 9.8 32 51-82 50-82 (300)
55 PRK12884 ubiA prenyltransferas 93.8 0.48 1.2E-05 25.4 11.2 25 54-79 48-72 (281)
56 TIGR00751 menA 1,4-dihydroxy-2 91.6 0.96 2.5E-05 23.6 21.0 185 23-212 12-214 (286)
57 pfam00474 SSF Sodium:solute sy 89.8 1.4 3.6E-05 22.6 10.5 17 54-70 65-81 (406)
58 PRK12488 acetate permease; Pro 89.5 1.5 3.8E-05 22.5 9.7 19 177-195 276-296 (549)
59 PRK09395 actP acetate permease 86.0 2.4 6.2E-05 21.2 9.7 29 253-281 389-417 (551)
60 TIGR03648 Na_symport_lg probab 85.8 2.5 6.4E-05 21.1 10.1 22 52-73 89-110 (552)
61 TIGR02840 spore_YtaF putative 80.5 4.1 0.0001 19.8 10.7 37 82-118 127-167 (215)
62 PRK10484 putative symporter Yi 69.4 8 0.0002 18.1 13.3 20 54-73 98-117 (528)
63 COG4125 Predicted membrane pro 69.0 8.2 0.00021 18.1 6.5 57 52-110 48-104 (149)
64 PRK09442 panF sodium/panthothe 66.5 9.2 0.00024 17.8 11.8 17 56-72 106-122 (479)
65 TIGR00882 2A0105 oligosacchari 58.5 12 0.00031 17.0 3.3 20 126-149 88-107 (397)
66 TIGR00892 2A0113 monocarboxyla 54.9 15 0.00038 16.5 4.7 45 130-174 284-335 (475)
67 TIGR03145 cyt_nit_nrfE cytochr 43.0 23 0.00059 15.4 8.8 36 195-230 257-292 (628)
68 COG4666 TRAP-type uncharacteri 39.9 26 0.00066 15.1 8.2 70 130-203 257-339 (642)
69 PRK04214 rbn ribonuclease BN/u 39.6 26 0.00066 15.1 10.3 27 51-85 114-140 (411)
70 PRK00625 shikimate kinase; Pro 38.0 6.7 0.00017 18.6 -0.7 20 63-82 101-120 (173)
71 TIGR02123 TRAP_fused TRAP tran 36.0 30 0.00076 14.7 10.6 88 43-157 183-281 (681)
72 TIGR00813 sss transporter, sol 34.5 31 0.0008 14.6 8.8 20 54-73 70-89 (448)
73 pfam02554 CstA Carbon starvati 29.4 38 0.00098 14.1 6.6 16 79-94 118-133 (382)
74 KOG3976 consensus 27.6 41 0.0011 13.9 4.1 23 64-86 32-54 (247)
75 COG0738 FucP Fucose permease [ 26.8 43 0.0011 13.8 6.2 27 79-105 69-95 (422)
76 COG0591 PutP Na+/proline sympo 26.3 44 0.0011 13.8 10.6 14 57-70 104-117 (493)
77 COG2239 MgtE Mg/Co/Ni transpor 25.1 46 0.0012 13.6 7.0 13 12-24 277-289 (451)
78 COG4854 Predicted membrane pro 23.0 50 0.0013 13.4 4.4 25 16-40 9-33 (126)
79 TIGR01290 nifB nitrogenase cof 22.7 40 0.001 14.0 1.1 35 56-93 33-68 (461)
No 1
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase; InterPro: IPR006369 This family describes protoheme IX farnesyltransferase, also called haeme O synthase, an enzyme that creates an intermediate in the biosynthesis of haeme A . Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor. ; GO: 0008495 protoheme IX farnesyltransferase activity, 0006783 heme biosynthetic process, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=544.58 Aligned_cols=281 Identities=44% Similarity=0.756 Sum_probs=268.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHH
Q ss_conf 99999962689999999999999970898-------99899999999999999999988633066120137121070566
Q gi|254780360|r 9 NFFIVLLKPRVMSLAIYTAFVGIVLAPGH-------ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIP 81 (305)
Q Consensus 9 ~~y~~L~kp~~~~~~~~~~~~g~~la~~~-------~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~ 81 (305)
|.|+||+|||++.++.+++++|+++|.++ .++..++.+++|+.++.+++|++|+++|||||++|+||++||+|
T Consensus 1 k~y~~LtKp~~~~L~~~t~~~G~~lA~~~~~~~~~~~~~~~~~~~~~G~~L~~~~A~a~N~~~DrdiD~~M~RT~~RP~v 80 (297)
T TIGR01473 1 KDYLQLTKPRVISLLLITAFAGMWLASGGADKLSFLVNLPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLV 80 (297)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 93377886789999999999998762256665431116899999999999999998797212146610017564568854
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCC
Q ss_conf 53047898999888877668999886344589999999888654445443102665605888877664221101323688
Q gi|254780360|r 82 LGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGD 161 (305)
Q Consensus 82 ~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~ 161 (305)
+|+|+++||+.++..+.+.|...++...|++++.++++++++|+++||.++||+|++|+++||++||+||++||+|++|+
T Consensus 81 ~G~~~p~~al~fg~~l~~~g~~~L~~~~N~l~A~l~~~g~f~Yv~~YT~~lKR~t~~NtviGg~~Ga~PpliGw~Av~g~ 160 (297)
T TIGR01473 81 TGRISPREALAFGLLLGVLGVALLAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGS 160 (297)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCC
T ss_conf 36666667999999999999999999873999999999999888775120357421354253065121342404010699
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCC---H
Q ss_conf 5663211147888899999999986535666641013351243388778997434---568989987642102210---8
Q gi|254780360|r 162 VSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIY---TVLTSIVGVLPTMLGFAS---V 235 (305)
Q Consensus 162 ~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~y---si~~~llsll~~~~~~~g---~ 235 (305)
++.++++|+.++|+|||||||++|+++||||+++|+||+|++.|++.|+++|..| +..+.+.++.+.+.+..| .
T Consensus 161 ~~~~~~~L~~i~F~WqPpHFwaLA~~~~dDY~~A~iPMLPvv~g~~~t~~~I~~yC~~~~~L~~~~~~~~~~~~~g~~g~ 240 (297)
T TIGR01473 161 ISLEAWLLFAIIFLWQPPHFWALALKYKDDYAAAGIPMLPVVKGERITKRQIALYCVYTAALFPVSLLLYFLGATGYLGW 240 (297)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 88789999999998767889999976578886289510454162799999999999999999999999987400020579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999995048---89978999998798999999999999986
Q gi|254780360|r 236 TYGIIVFFLGYHFTLWAWRTFLCKE---DKDIRVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 236 ~yli~ali~~~~~l~~a~~~~~~~~---~~~~k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
.|++.+.++|.++++++++.++.++ .++.|+|||+|++|++|+.++|+++++|+
T Consensus 241 ~Y~~~a~~l~a~~l~~~~~~~~~~~~~~~~~~kwA~k~F~~S~~yL~~~f~~~~~~~ 297 (297)
T TIGR01473 241 LYLIVATLLGALFLYLALKFYRDPDNYSGDRKKWARKLFKFSLIYLALLFLALLIDS 297 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999988444156788714568876416899999999999976179
No 2
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=0 Score=520.44 Aligned_cols=292 Identities=26% Similarity=0.454 Sum_probs=279.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHH
Q ss_conf 65379999996268999999999999997089-89989999999999999999998863306612013712107056653
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLG 83 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g 83 (305)
-.++|.|+||+|||++.++++++++|+++|.+ .+++..++..++|++++++++|++||++|||+|++|+||++||+|+|
T Consensus 10 ~s~lk~y~~LtKpri~~lv~~ta~~g~~lA~~~~~~~~~~l~~~lG~~l~~~sa~~~N~~~erdiD~~M~RT~~RPlp~g 89 (306)
T PRK13362 10 EASVKDYFQVTKPGIIFGNVISVAGGFFLASKGHVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTANRVTVTG 89 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 65599999986099999999999999998178999999999999999999999999871576445689999999977778
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
Q ss_conf 04789899988887766899988634458999999988865444544310266560588887766422110132368856
Q gi|254780360|r 84 QISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVS 163 (305)
Q Consensus 84 ~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~ 163 (305)
++|++||+.++..+..+|+.+++...|++++.++..+++.|+++|||++||+|++|+++||++||+||++||+|++|+++
T Consensus 90 ~is~~~A~~~~~~l~~~g~~~l~~~~N~~~a~l~~~~~~~Y~~iYT~~lKr~t~~n~~iG~i~Ga~PpliGw~A~~g~l~ 169 (306)
T PRK13362 90 EISLGEALGFGLALGVLGFGLLAAFTNPLAALFAAFGYVVYVGIYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFD 169 (306)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEECCCCC
T ss_conf 88788999999999999999999978899999999985327887787784176410267877400103541310069988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 63211147888899999999986535666641013351243388778997434568989987642102210899999999
Q gi|254780360|r 164 IASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFF 243 (305)
Q Consensus 164 ~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali 243 (305)
.++|++|.++|+||+||||++|++++|||+|+|+||+|+..|+++|++++..|++.+++.++++++.+..|..|+..+..
T Consensus 170 ~~~~~Lf~i~f~Wq~pHF~alA~~~r~DY~~Ag~pMLPv~~g~~~T~~~i~~y~~~l~~~sll~~~~g~~g~~y~~~a~~ 249 (306)
T PRK13362 170 AGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTLLLPLAGYTGIGYLAVAAA 249 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999975699999999808759868997475777737799999999999999999999987604999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 999999999999950488997899999879899999999999998660845699
Q gi|254780360|r 244 LGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVE 297 (305)
Q Consensus 244 ~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i~~~~~~ 297 (305)
.+.++++.+++.++..+ ++.++|||+|++|++|++++|+++++|+++....+.
T Consensus 250 l~~~~l~~~~~~~~~~~-~~~~~ArklF~~Si~YL~llf~~l~lD~~v~~~~~~ 302 (306)
T PRK13362 250 TSLWWLAMALKGYRHAV-DDLKWARQLFAFSILTITALSVMMLLDFVVAATALL 302 (306)
T ss_pred HHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999986157-865999999999999999999999999821542145
No 3
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=0 Score=520.63 Aligned_cols=287 Identities=49% Similarity=0.876 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHH
Q ss_conf 65379999996268999999999999997089-89989999999999999999998863306612013712107056653
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLG 83 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g 83 (305)
-.|+|.|+||+||+++.++++++++|+++|.+ .+++..++..++|++++++++|++||++|||+|++|+||++||+|+|
T Consensus 13 r~~lk~y~~L~Kp~i~~l~~~t~~~g~~lA~~~~~~~~~~~~~~~g~~l~~~aa~~~N~~~d~diD~~m~RT~~RPlpsG 92 (303)
T PRK04375 13 RATFKDYLALTKPRVVSLNLFTALVGMLLAPPGLVNPPLLLLTLLGIALGAGAAGALNNYIDRDIDAIMERTKNRPLVTG 92 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 42099999996399999999999999999567899999999999999999999999977721041667888899852158
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
Q ss_conf 04789899988887766899988634458999999988865444544310266560588887766422110132368856
Q gi|254780360|r 84 QISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVS 163 (305)
Q Consensus 84 ~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~ 163 (305)
++|++||..++..+.++|+.++....|++++.+++.+++.|+++|||++||+|++||++||++|++||++||+|++|+++
T Consensus 93 ~is~~~a~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~~Y~~iYt~~lKR~t~~~~~vGgi~Ga~ppl~Gw~Av~g~~~ 172 (303)
T PRK04375 93 RISPREALVFGLVLGVLGFLLLWLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSIS 172 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 87899999999999999999999998899999999999988875349987155244699898745578888999659997
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 63211147888899999999986535666641013351243388778997434568989987642102210899999999
Q gi|254780360|r 164 IASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFF 243 (305)
Q Consensus 164 ~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali 243 (305)
++++++|.++++||+||||++|++|+|||+|+|+||+|+++|++++++++..|++.+++.++.+++.+..|..|++.+.+
T Consensus 173 ~~~~~Lf~~~~~Wq~pHf~alA~~~~~DY~~aG~~mlPv~~g~~~t~~~~~~~~~~l~~~s~~~~~~~~~g~~y~~~a~~ 252 (303)
T PRK04375 173 WEALILFLIIFLWTPPHFWALAIFRRDDYAAAGIPMLPVVHGIRVTKRQILLYTILLAAVTLLPVLVGMAGWVYLVVALL 252 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 89999999999998687899999861069867973043145759899999999999999998999980020999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999999995048899789999987989999999999999866084
Q gi|254780360|r 244 LGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDM 293 (305)
Q Consensus 244 ~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i~~ 293 (305)
.+.++++.+++.++. +++.++|||+|++|++|++++|+++++|++++.
T Consensus 253 ~~~~~l~~~~~~~~~--~~~~~~ar~lF~~S~~yL~llf~~lvlD~ll~~ 300 (303)
T PRK04375 253 LGAGFLYYAWRLYRD--PDDKKWARKLFRYSINYLTLLFVALLVDHLLPL 300 (303)
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999838--896499999999999999999999999998858
No 4
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=512.21 Aligned_cols=286 Identities=48% Similarity=0.850 Sum_probs=278.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHH
Q ss_conf 36537999999626899999999999999708-98998999999999999999999886330661201371210705665
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPL 82 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~-~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~ 82 (305)
+..++|+|+||+|||++.+++++++.|+++|. +..++..++...+|+.++.+++|++|+++|||||++|+||++||+|+
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~ 93 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVT 93 (304)
T ss_pred HHHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCC
T ss_conf 67789999987087055249999999999715465668999999999999998998986142540677532215898877
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCC
Q ss_conf 30478989998888776689998863445899999998886544454431026656058888776642211013236885
Q gi|254780360|r 83 GQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV 162 (305)
Q Consensus 83 g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~ 162 (305)
|+|+++||+.++..++++|...+.+..|++++.+.+.++++|+++||.++||+|++|+++||++|++||++||+|++|++
T Consensus 94 G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAvtg~~ 173 (304)
T COG0109 94 GLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSI 173 (304)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCC
T ss_conf 74289999999999999999999999879999999999999876321010377633025401245566523056560887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 66321114788889999999998653566664101335124338877899743456898998764210221089999999
Q gi|254780360|r 163 SIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVF 242 (305)
Q Consensus 163 ~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~al 242 (305)
+.++++||.++|+||+||+|++|++++|||+++|+||+|++.|++.|+++|..|++++.+.++++.+.|..|+.|.+.+.
T Consensus 174 ~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v~a~ 253 (304)
T COG0109 174 SLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVAT 253 (304)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 80599999999992667999999997887987499825413438999999999999999999999984000069999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999504889978999998798999999999999986608
Q gi|254780360|r 243 FLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLID 292 (305)
Q Consensus 243 i~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i~ 292 (305)
+++.++++++++.++. +|.|+|+|+|++|+.|+.++|.++++|+.+.
T Consensus 254 ~l~~~~l~~a~~~~~~---~~~~~A~klF~~S~~yL~~lf~~l~id~~~~ 300 (304)
T COG0109 254 LLGAWFLALAWKLYRK---DDRKWARKLFKYSIIYLALLFVALLIDSLLL 300 (304)
T ss_pred HHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999608---5379999999999999999999999999873
No 5
>PRK12869 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=492.34 Aligned_cols=278 Identities=32% Similarity=0.495 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCH
Q ss_conf 79999996268999999999999997089899899999999999999999988633066120137121070566530478
Q gi|254780360|r 8 LNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISP 87 (305)
Q Consensus 8 ~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~ 87 (305)
+|+|+||+||+++.++++++++|++++.++.++..++..++|+++++++||++||++|||+|++|+||++||+|+|++|+
T Consensus 1 lk~Y~~L~Kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~g~~l~~~~~~~~N~~~DrdiD~~m~RT~~RPlpsG~is~ 80 (278)
T PRK12869 1 LNPYLKLLKPRVIWLLDLAAVAGYIYAAGGVDWGSLIALLIVGTLASGGSAAFNHYWERDIDAVMKRTSKRPLPSGLVSP 80 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
T ss_conf 97689895599999999999999999389998799999999999999999999838874347688888888432588889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCC
Q ss_conf 98999888877668999886344589999999888654445443102665605888877664221101323688566321
Q gi|254780360|r 88 WEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASL 167 (305)
Q Consensus 88 ~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~~~~~ 167 (305)
+||+.++.++..+|+.++....|++++.+..++.+.|+++|||++||+|++||++||++|++||++||+|++|+++.+++
T Consensus 81 ~~a~~~~~~l~~~g~~~~~~~~~~~~a~~~~~~~~~y~~iYt~~lKr~t~~~~~igg~~ga~p~l~Gw~a~~g~~~~~~~ 160 (278)
T PRK12869 81 KEALAYSLALSALGILLGFLLLGPLPGLFIALGWFFYAVVYTIWLKRRTWLNIVIGGFAGNAAFLAGYALGKGSVDLPAV 160 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999999999999999999999999999999999999998762520661869999998889999999998399985899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 11478888999999999865356666410133512433887789974345689899876421022108999999999999
Q gi|254780360|r 168 VMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYH 247 (305)
Q Consensus 168 ~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali~~~~ 247 (305)
+++...++||+||||++|++|+|||||+|+||+|+..|+|++++++..++..++.++..++..+..|..|+..+...+..
T Consensus 161 ~l~~~~~~W~~~hf~~~a~~~~edy~~aGi~mlp~~~g~~~t~~~i~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~ 240 (278)
T PRK12869 161 LLSFAIYLWIPGHIWALAYKYREDYRRAGVPMLPAVVDEKTAVRAISILNAASIPYILLLYLYFGGGLIGLILVAAGVAA 240 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999989999999999476098679988862118624999999999999999999999987149999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999950488997899999879899999999999998
Q gi|254780360|r 248 FTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVD 288 (305)
Q Consensus 248 ~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid 288 (305)
+++.+.+.++ ++|.++|+|.|+.|+.|++++|++++++
T Consensus 241 ~l~~~~~~~~---~~~~~~a~k~F~~S~~yl~llfi~lvl~ 278 (278)
T PRK12869 241 TLATSIRALV---NPTDEAMWKMFKASSPYLALFLLALIIS 278 (278)
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999972---8987999999999999999999999979
No 6
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=469.81 Aligned_cols=283 Identities=20% Similarity=0.219 Sum_probs=253.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHH
Q ss_conf 0365379999996268999999999999997089-899899999999999999999988633066120137121070566
Q gi|254780360|r 3 FQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIP 81 (305)
Q Consensus 3 ~~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~ 81 (305)
=.++|+|.|+||+||+++.+.+++++.|+++|.+ .++...+++.++|++++|++||++||++|||+|++|||||+||+|
T Consensus 3 ~~~~kik~yl~l~k~~~t~~~l~~a~~g~~lA~~g~p~~~~l~~~~lg~~~~rsag~~iN~i~D~diD~~~~RT~~RPL~ 82 (291)
T PRK12886 3 NFFTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGTPGASQLDWILMAMVGARTAAMGFNRIIDAEIDAKNPRTAGRAIP 82 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 18999999999970514999999999999997578998999999999999999999999989876204689666788764
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCC
Q ss_conf 53047898999888877668999886344589999999888654445443102665605888877664221101323688
Q gi|254780360|r 82 LGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGD 161 (305)
Q Consensus 82 ~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~ 161 (305)
+|++|++||..+...+...+ ..+.++.|+++..++..+++ |+++| |++||+|++||+++|+++++||++||+|++|+
T Consensus 83 sG~is~~~a~~~~~~~~~~~-~~~~~~ln~l~~~l~~~~~~-~~~~Y-p~~KR~t~~~~~vlG~~~~~~pl~gw~Av~g~ 159 (291)
T PRK12886 83 AGLISKGSALLFIVLSSLLF-LFAAWFLNPLCLLLSPPALF-FLLLY-SYCKRFTALAHVVLGFCLALAPLGAWIAIRGT 159 (291)
T ss_pred CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 68969999999999999999-99999987999999999999-99999-99986563108999999863688999998189
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 56632111478888999999999865356666410133512433887789974345689899876421022108999999
Q gi|254780360|r 162 VSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIV 241 (305)
Q Consensus 162 ~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~a 241 (305)
++.++++++.+.++||++|||+||+||+|||+|+|+||+|+++|+|++++++..+++.++.+++.++.....|..|++..
T Consensus 160 ~~~~~~lL~~~~~~W~~~~d~~ya~~D~edD~k~Gv~Slpv~fG~~~~~~i~~~~~~~~v~~~~~~~~~~~lg~~y~~~~ 239 (291)
T PRK12886 160 IELPAILLGLGVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLAGL 239 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999999998999997076298769974368857285899999999999999999999985059999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999950488997899999879899999999999998660
Q gi|254780360|r 242 FFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 (305)
Q Consensus 242 li~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i 291 (305)
.+.+..+.|+. ...+++++.+.++++|+.|++++.++|.++++|++.
T Consensus 240 ~~~~~~l~y~~---~l~~~~d~~~~~~afF~~N~~ig~~lf~~illD~l~ 286 (291)
T PRK12886 240 AVTGYMLLYEH---WLLRGGDLTRLDAAFFQMNGYISVTLFAATLFDRLF 286 (291)
T ss_pred HHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999---990789869999999998499999999999999999
No 7
>PRK12847 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=460.77 Aligned_cols=277 Identities=19% Similarity=0.255 Sum_probs=244.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCH
Q ss_conf 365379999996---2689999999999999970898--99899999999999999999988633066120137121070
Q gi|254780360|r 4 QVFRLNFFIVLL---KPRVMSLAIYTAFVGIVLAPGH--ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASR 78 (305)
Q Consensus 4 ~~~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~~~--~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 78 (305)
++.|+++|+||+ ||++++++.+|+++|+++|.++ ++...+.+.++|++++|++||++||++|||+|++|||||+|
T Consensus 3 ~~~k~~~y~~L~rl~kP~g~~Ll~~p~~~g~~la~~~~~~~~~~~~l~~ig~~l~r~ag~~iNd~~DrdiD~~~~RTk~R 82 (284)
T PRK12847 3 ILQKFNAYFKLMRLHKPVGILLVFFPTLFGLLLASHSLLPDISLLVLFIIGSILMRSAGCIINDIFDRKIDKHVARTKNR 82 (284)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 78999999999732674448999999999999836888850999999999999999999899989897247898799987
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECC
Q ss_conf 56653047898999888877668999886344589999999888654445443102665605888877664221101323
Q gi|254780360|r 79 PIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASV 158 (305)
Q Consensus 79 Pl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~ 158 (305)
|+|+|++|++||+.++.+++..+..++ .+.|+.+..++..+.+. +++| |++||+|++||+++|+++++||++||+|+
T Consensus 83 Pl~~G~is~~~A~~~~~~l~~~~~~~l-~~ln~~~~~l~~~~~~~-~~iY-p~~KR~t~~pq~ilG~~~~~~~l~g~~a~ 159 (284)
T PRK12847 83 PLASGALSVKQALILLFILLLIALVIL-LFLNKYTIYLSFIAVIL-IVLY-PLMKRFFYWPQLFLGFTFNSGILMAYAAV 159 (284)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH-HHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 646777678999999999999999998-32779999999999999-9999-98886301434787777652488999997
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 68856632111478888999999999865356666410133512433887789974345689899876421022108999
Q gi|254780360|r 159 TGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYG 238 (305)
Q Consensus 159 ~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yl 238 (305)
+|+++.++++++...++||++|||+||+||+|||+|+|+||+|+.+|+|.++..+..+.+...+++..++..+. +..|.
T Consensus 160 ~~~~~~~~~~L~~~~~~Wt~~~d~~yA~~D~~DD~k~Gv~S~av~~G~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~yy 238 (284)
T PRK12847 160 QNQLDIEAILLYIGCIFWTIGYDTIYAAQDKKDDLKIGVKSTAIYFGNKTRKWILRLYIISLILWLILGIKSSL-NNIFY 238 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 39988789999999999999998999997154298769965643626430999999999999999999999871-69999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999950488997899999879899999999999998
Q gi|254780360|r 239 IIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVD 288 (305)
Q Consensus 239 i~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid 288 (305)
...+..... +++. ++..+.+|.++|++.|+.|++++.++|++++++
T Consensus 239 ~~~~~~~~~-l~~~---~~~i~~~~~~~~~~~F~~N~~~g~lif~giilG 284 (284)
T PRK12847 239 LAILIAAGI-FYYQ---YKTLDFDNPANCMYRFKANHYVGLLLFLGAVLG 284 (284)
T ss_pred HHHHHHHHH-HHHH---HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999-9999---999289998999999997199999999999959
No 8
>PRK12870 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=455.16 Aligned_cols=279 Identities=18% Similarity=0.208 Sum_probs=244.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHH
Q ss_conf 5379999996---268999999999999997089-899899999999999999999988633066120137121070566
Q gi|254780360|r 6 FRLNFFIVLL---KPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIP 81 (305)
Q Consensus 6 ~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~ 81 (305)
.++++|+||+ ||.+++++++|+++|.++|.+ .++...+.+.++|++++|+|||++||++|||+|++|||||+||+|
T Consensus 7 p~w~~y~~L~R~~kP~g~~LL~~p~~~~l~la~~g~p~~~~~~~~~~G~~~~rsagc~iNdi~DrdiD~~v~RT~~RPl~ 86 (289)
T PRK12870 7 PTWLTIIRLLRWDKPAGRLILMIPALWAVFLAARGLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPHVERTRGRPLA 86 (289)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 87899999974467675899999899999997578998999999999999999998699989998145788888887676
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCC
Q ss_conf 53047898999888877668999886344589999999888654445443102665605888877664221101323688
Q gi|254780360|r 82 LGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGD 161 (305)
Q Consensus 82 ~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~ 161 (305)
+|++|++||+.++.++...+..++ ++.|+.+..++...... +++| |++||+|++||+++|+++++||++||+|++|+
T Consensus 87 ~G~is~~~A~~~~~~l~~~~~~ll-~~ln~~~~~l~~~~~~~-~~iY-p~~KR~t~~pq~~lG~~~~~~~l~gw~av~g~ 163 (289)
T PRK12870 87 SRRLSVKVGIVIALVALLCAAGLA-FFLNPLSFWLCVAAVPV-IFLY-PLAKRVFPVPQLVLAAAWGFAVLISWSAVTGH 163 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHH-HHCCEEEECCCHHHHHHHCCHHHHHHHHHCCC
T ss_conf 777579999999999999999999-99999999999999988-9976-51102267774056754100377899994699
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 56632111478888999999999865356666410133512433887789974345689899876421022108999999
Q gi|254780360|r 162 VSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIV 241 (305)
Q Consensus 162 ~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~a 241 (305)
++.++++|+...++||++|||+||+||+|||+|+|+||+|+++|++.+......+.+....+...+...+ .+..|+...
T Consensus 164 l~~~~~lL~~~~~~Wt~~~DtiYA~qD~~dD~k~Gv~S~av~~G~~~~~~i~~~~~~~~~~l~~~g~~~~-l~~~y~~~~ 242 (289)
T PRK12870 164 LEVATWLLWGATVFWTLGFDTVYAMSDREDDLRIGINSSAIFFGRYAPEAIGLFFALTVLFLAILGVLLE-LHPPFWLGL 242 (289)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHH
T ss_conf 8768999999999999999899988517539876998775050500699999999999999999999985-319999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999950488997899999879899999999999998660
Q gi|254780360|r 242 FFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 (305)
Q Consensus 242 li~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i 291 (305)
...+..+.++ ..+.+++++++.|.+.|+.|+.++.++|+++++|+++
T Consensus 243 ~~~~~~~~~q---~~~l~~~~~~~~~~~~F~~N~~~g~llf~gi~~d~ll 289 (289)
T PRK12870 243 ALATVLWARQ---YRRLQAELPPAAYGQLFLQNVWIGFILLAGMILGSLL 289 (289)
T ss_pred HHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999---9996279986999999998399999999999998749
No 9
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=454.48 Aligned_cols=277 Identities=23% Similarity=0.266 Sum_probs=242.4
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHH
Q ss_conf 65379999996---268999999999999997089-89989999999999999999998863306612013712107056
Q gi|254780360|r 5 VFRLNFFIVLL---KPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPI 80 (305)
Q Consensus 5 ~~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl 80 (305)
..|+++|+||+ ||++++++.+|+++|+++|.+ .++...++++++|++++|++||++||++|||+|++|+|||+||+
T Consensus 2 ~~k~~~Y~~L~Rl~kP~g~~Ll~~p~~~g~~la~~g~~~~~~l~~~~~g~~~~r~agc~~Nd~~DrdiD~~~~RTk~RPl 81 (282)
T PRK12848 2 QDRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLWVLVIFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPL 81 (282)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 27799999998426861159999999999998568999889999999999999999989999988723258988899988
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCC
Q ss_conf 65304789899988887766899988634458999999988865444544310266560588887766422110132368
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTG 160 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~ 160 (305)
|+|++|++||+.+++++..++..++ .+.|+.+..++..+++. +++| |++||+|++||+++|+++++++++||+|++|
T Consensus 82 ~~G~is~~~A~~~~~~~~~~~~~~l-~~ln~~~~~l~~~~~~~-~~iY-p~~KR~t~~p~~~lG~~~~~~~l~g~~a~~g 158 (282)
T PRK12848 82 ASGAVSEKEALALFVVLVLVAFLLV-LTLNTLTIWLSVAALAL-AFIY-PFMKRYTHLPQVVLGAAFGWGIPMAFAAVQG 158 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7772679999999999999999999-99999999999999999-9888-7657641375029999987566668999749
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 85663211147888899999999986535666641013351243388778997434568989987642102210899999
Q gi|254780360|r 161 DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGII 240 (305)
Q Consensus 161 ~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ 240 (305)
+++.++++++...++||++|||+||+||+|||+|+|+||+|+++|++.+......+.....++...++..+ .+..|...
T Consensus 159 ~~~~~~~~L~~~~~~Wt~~~d~~yA~~D~~dD~~~Gv~S~av~~G~~~~~~i~~~~~~~~~l~~~~g~~~~-~~~~y~~~ 237 (282)
T PRK12848 159 SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLALAGWLLG-LGWGYYWG 237 (282)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHH
T ss_conf 99889999999999999998899997056539766999645886500189999999999999999999973-73999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999504889978999998798999999999999986
Q gi|254780360|r 241 VFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 241 ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
.......+.+ +.+. .+.+|++.|.+.|+.|+.++.++|+++++|.
T Consensus 238 ~~~~~~~l~~-q~~~---v~~~d~~~~~~~F~~N~~~g~ilf~gi~ldy 282 (282)
T PRK12848 238 LLVAAALFVY-QQKL---IRDREREACFKAFLNNNWVGLVLFAGIAASY 282 (282)
T ss_pred HHHHHHHHHH-HHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999-9998---0699889999999973999999999999419
No 10
>PRK12877 consensus
Probab=100.00 E-value=0 Score=455.20 Aligned_cols=278 Identities=19% Similarity=0.251 Sum_probs=242.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCC-CCHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHH
Q ss_conf 5379999996---2689999999999999970898-9989-999999999999999998863306612013712107056
Q gi|254780360|r 6 FRLNFFIVLL---KPRVMSLAIYTAFVGIVLAPGH-ISVL-KSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPI 80 (305)
Q Consensus 6 ~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~~~-~~~~-~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl 80 (305)
+|+++|+||+ ||++++++.+|+++|+++|+++ .+.. .+.+.++|++++|++||++||++|||+|++|||||+||+
T Consensus 1 sk~~~y~~L~Rl~kP~g~~Ll~~p~~~g~~lA~~~~~~~~~l~~l~~~G~~l~rsagc~iNd~~D~diD~~v~RT~~RPl 80 (283)
T PRK12877 1 SKFLLYFKLMRLHSPVIYLLVFFPALFGILLASPSLLELLYLLPLFILGSITMRSAGCIINDIFDRKIDKHVARTKNRPL 80 (283)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 97279999975366066899999999999981678985599999999999999999989998998603678775778766
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCC
Q ss_conf 65304789899988887766899988634458999999988865444544310266560588887766422110132368
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTG 160 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~ 160 (305)
|+|++|++||+.++..+...++.++ ++.|+.+..++..+.+. +++| |++||+|++||+++|+++++||++||+|++|
T Consensus 81 ~~G~is~~~A~~~~~~~~~~~~~~l-~~ln~~~~~l~~~~~~~-~~~Y-p~~KR~t~~pq~~lG~~~~~~~l~g~~av~~ 157 (283)
T PRK12877 81 ASGALSVSQALKILFILLIIALVIL-LLTNKTAIYLGIFAMIM-IVLY-PLMKRIFYWPQLFLGFTFNLGVLIGYAMVQN 157 (283)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHH-EEEE-EEEEECCCCCHHHHHHHHHCCHHHHHHHHCC
T ss_conf 7789778899999999999999999-85349999999998682-4421-4121114333899878764221354987189
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 85663211147888899999999986535666641013351243388778997434568989987642102210899999
Q gi|254780360|r 161 DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGII 240 (305)
Q Consensus 161 ~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ 240 (305)
+++.++++++...++||++|||+||+||+|||+|+|+||+|+.+|++.+......+.+...++...++..+. +..|...
T Consensus 158 ~~~~~~~ll~~~~~~W~~~~dtiYA~qD~~dD~k~Gv~S~av~~G~~~~~~i~~~~~~~~~ll~~~~~~~~~-~~~y~i~ 236 (283)
T PRK12877 158 KLDIASILMYIGCIFWTIGYDTIYAAQDKKDDKKLGVKSTAIYFGNKIKLWLYRLYIIFILMWISAGIIANL-HNIFYLA 236 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 878799999999999999999999842257699749987784127526999999999999999999999874-4999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999950488997899999879899999999999998660
Q gi|254780360|r 241 VFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 (305)
Q Consensus 241 ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i 291 (305)
.......+.+ .. +..+.++++.|.+.|+.|++++.++|+++++|+++
T Consensus 237 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~F~~N~~~g~~if~gi~l~~li 283 (283)
T PRK12877 237 ILAAAILFYY-QY---ATLDFDNPANCMYRFKANNYVGLLLFLGFCLGRIV 283 (283)
T ss_pred HHHHHHHHHH-HH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999-99---98589997999999998399999999999998739
No 11
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase; InterPro: IPR006370 These sequences are a family of integral membrane proteins that condense para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in Escherichia coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterised members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterised members IPR006371 from INTERPRO .; GO: 0004659 prenyltransferase activity, 0009058 biosynthetic process, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=459.01 Aligned_cols=274 Identities=24% Similarity=0.260 Sum_probs=241.1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCH
Q ss_conf 79999996---268999999999999997089------899899999999999999999988633066120137121070
Q gi|254780360|r 8 LNFFIVLL---KPRVMSLAIYTAFVGIVLAPG------HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASR 78 (305)
Q Consensus 8 ~~~y~~L~---kp~~~~~~~~~~~~g~~la~~------~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 78 (305)
+..|.||+ ||-+++++.+||.+|.++|.+ .++...+..+.+|++++|||||++||+.|||+|+++||||+|
T Consensus 1 l~~Y~~L~R~DkP~G~lLLl~P~~W~~~LAA~~~~~s~~p~~~~L~~F~~G~~lMRgAGCviND~~DR~~D~~VeRTk~R 80 (291)
T TIGR01474 1 LLPYAKLMRADKPIGTLLLLLPCLWSILLAAQAYDASGLPPLLLLALFTVGAILMRGAGCVINDIVDRDFDKQVERTKSR 80 (291)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 93899997255769999999999999999865206788860899999999999986404343304624004334000037
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECC
Q ss_conf 56653047898999888877668999886344589999999888654445443102665605888877664221101323
Q gi|254780360|r 79 PIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASV 158 (305)
Q Consensus 79 Pl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~ 158 (305)
|||||++|+|||+.+...+..+|+.++ +.+|..|..+++.++.+ +.+| |++||+|++||+++|++.+.++++||+|+
T Consensus 81 PLasG~vs~~~A~~~~~~~~l~~l~~L-l~LN~~ti~Lgv~sL~l-v~~Y-P~~KR~t~~PQ~~LGlaF~wGalmg~~A~ 157 (291)
T TIGR01474 81 PLASGAVSVRQAILFLLVQLLVALGVL-LQLNSLTILLGVASLAL-VAIY-PFMKRITYWPQLVLGLAFGWGALMGWAAV 157 (291)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHH-CCHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 874663118999999999999999999-87557999998999999-9980-11320151579999999843588778786
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC--C
Q ss_conf 68--856632111478888999999999865356666410133512433887-789974345689899876421022--1
Q gi|254780360|r 159 TG--DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRT-TKMHILIYTVLTSIVGVLPTMLGF--A 233 (305)
Q Consensus 159 ~~--~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~-t~~~i~~ysi~~~llsll~~~~~~--~ 233 (305)
+| +.+..+++|+....+||++|||+|||||||||+|+|+||++..+|++. ......+| ..++.+....+.... .
T Consensus 158 ~G~~~l~~~a~~LY~a~i~Wt~~YDTiYA~~Dk~DD~kiGvkStA~~FG~~~Pk~~l~~l~-~~~i~lL~~aG~~~~ll~ 236 (291)
T TIGR01474 158 QGVMDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDLKIGVKSTALRFGDNTPKPWLGGLY-ALMILLLALAGLIAGLLL 236 (291)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 1667876889999999999999986887532706467714289988740478178999999-999999999999988875
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 08999999999999999999999504889978999--998798999999999999986
Q gi|254780360|r 234 SVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTK--KLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 234 g~~yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~--klF~~S~~yl~ilfl~liid~ 289 (305)
|+.|+....+....+.+ ++..-+.+|++.|. |.|+.|+..|.++|.++++|.
T Consensus 237 ~~~yy~~l~~a~~~l~~----Qi~~l~~~~P~~C~yG~~F~~N~~vG~~~f~gi~l~~ 290 (291)
T TIGR01474 237 GPVYYLGLAAAALLLIR----QIATLDIRDPENCLYGKLFKANNYVGLLLFAGIVLGL 290 (291)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 48999999999999999----9888851678101687786502089999999999842
No 12
>PRK12878 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=448.51 Aligned_cols=277 Identities=23% Similarity=0.258 Sum_probs=236.4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHH
Q ss_conf 5379999996---268999999999999997089------8998999999999999999999886330661201371210
Q gi|254780360|r 6 FRLNFFIVLL---KPRVMSLAIYTAFVGIVLAPG------HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTA 76 (305)
Q Consensus 6 ~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~~------~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 76 (305)
.++++|+||+ ||.+++++.+|+++|.++|+. .++...+.+..+|++++|||||++||++|||+|++|+|||
T Consensus 28 ~~~~pY~~L~RldkPiG~~LL~~P~~w~l~laa~~~~~~~~~~~~~l~lf~~G~~~mRsAGCviNDi~DrdiD~~v~RTk 107 (314)
T PRK12878 28 PWLRPYARLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLPLLWHLFLFFIGAIAMRGAGCTWNDIVDRDLDAKVARTR 107 (314)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 75789999984366198999999999999998615676666279999999999999931201999889860042564456
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEE
Q ss_conf 70566530478989998888776689998863445899999998886544454431026656058888776642211013
Q gi|254780360|r 77 SRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWA 156 (305)
Q Consensus 77 ~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~ 156 (305)
+||+|+|+||++||+.+..++..+++.++ .+.|+.+..++..++++ +.+| |++||+|++||+++|+++++++++||+
T Consensus 108 ~RPLasG~iS~~~A~~f~~~l~~~~~~ll-~~ln~~~~~l~~~~l~l-v~iY-P~~KR~t~~PQ~~LGl~f~~g~l~gw~ 184 (314)
T PRK12878 108 SRPLPSGQVSRKQAKVFMVLQALVGLAVL-LQFNRFAIALGIASLAI-VAAY-PFMKRITWWPQFFLGLAFSWGALMGWA 184 (314)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78876677799999999999999999999-99859999999999999-9999-999862103799999997305888999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 23688566321114788889999999998653566664101335124338877899743456898998764210221089
Q gi|254780360|r 157 SVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVT 236 (305)
Q Consensus 157 a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~ 236 (305)
|++|++++++++|+...++||++|||+||+||+|||+|+|+||+|+.+|++........+......+.... .....+..
T Consensus 185 Av~g~l~~~~~lL~~a~~~Wt~~yDtiYA~qD~~DD~k~GVkStav~fG~~~~~~i~~~~~l~~~ll~~~~-~~~~~~~~ 263 (314)
T PRK12878 185 ATFGSLSWAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGEHTKTWLVLLYGLAVVLMGAAF-ALARAPLL 263 (314)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 71688766999999999999999999997314765987699731578543729999999999999999999-99852299
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999995048899789999987989999999999999866
Q gi|254780360|r 237 YGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHL 290 (305)
Q Consensus 237 yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~ 290 (305)
|+.........+.+ . ++..+.+|++.|.+.|+.|+++|.++|+++++|++
T Consensus 264 ~~~~~~~~~~~l~~-q---~~~~~~~~~~~~~~~Fk~N~~~G~iif~gi~~~~L 313 (314)
T PRK12878 264 ALLGLLAAAAHLAW-Q---IVRLDIDDPAQCLRLFKSNRDAGLLIFAGLVVGGL 313 (314)
T ss_pred HHHHHHHHHHHHHH-H---HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999-9---99817998899999999819999999999998543
No 13
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=437.65 Aligned_cols=280 Identities=19% Similarity=0.230 Sum_probs=241.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHH
Q ss_conf 65379999996---26899999999999999708-989989999999999999999998863306612013712107056
Q gi|254780360|r 5 VFRLNFFIVLL---KPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPI 80 (305)
Q Consensus 5 ~~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~-~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl 80 (305)
-.|+++|.||+ ||.+++++++|+++|.++++ +.++...+.++.+|++++|||||++||++|||+|++|||||+||+
T Consensus 7 ~~kl~~y~~L~RldkP~G~~LLl~P~~~~l~la~~~~p~~~~l~lf~~G~~~mRsagC~iNDi~DrdiD~~v~RTk~RPL 86 (297)
T PRK12873 7 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPL 86 (297)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 77589999998111369899999989999998567999789999999999999875539987899662136542567752
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEC
Q ss_conf 6530478989998888776689998863---4458999999988865444544310266560588887766422110132
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVIMGLA---INWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWAS 157 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~l~~~---~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a 157 (305)
|+|++|++||+.+..++..+++.++... .|+.+..++..+... +++| |++||+|++||+++|++++++|++||+|
T Consensus 87 asG~vS~~~A~~~~~~l~~~~~~ll~~l~~~~~~~~l~la~~~~~~-i~~Y-Pl~KR~t~~PQ~~LG~~f~~~~l~~waa 164 (297)
T PRK12873 87 ARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPP-ILIY-PSAKRWFAYPQAILALCWGFAVLIPWAA 164 (297)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 3578538689999999999999999996504899999999999999-9998-7765531045899999999889999999
Q ss_pred CCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 368856632111--478888999999999865356666410133512433887789974345689899876421022108
Q gi|254780360|r 158 VTGDVSIASLVM--FLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASV 235 (305)
Q Consensus 158 ~~~~~~~~~~~l--~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~ 235 (305)
++|+++.+++++ +...++||++||++||+||+|||+|.|+||+|+.+|++........|....+.+...++..+. |.
T Consensus 165 v~g~l~~~~~ll~~~l~~~~Wt~~yDtiYA~qD~~dD~k~GvkS~av~fG~~~~~~i~~~~~l~~~ll~~~g~~~~~-~~ 243 (297)
T PRK12873 165 AEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLALAAFIAQV-GF 243 (297)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CH
T ss_conf 80888715999999999999999999999972498799769865057765041999999999999999999998618-79
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999504889978999998798999999999999986
Q gi|254780360|r 236 TYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 236 ~yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
.|+....+....+.+..++.. .++++.+.|++.|++|+++|.++|.++++||
T Consensus 244 ~yy~~~li~~~~~~~~~~~l~--~~~~~~~~~~~~F~~N~~~G~llf~Givl~k 295 (297)
T PRK12873 244 IFWPFWLIASIGMQRDILKLF--PEKQSIKTIGNHFSNQVILGSLLLLGLILAR 295 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999961--6676768999999987999999999999618
No 14
>PRK12894 consensus
Probab=100.00 E-value=0 Score=431.74 Aligned_cols=277 Identities=19% Similarity=0.182 Sum_probs=234.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHH
Q ss_conf 65379999996---268999999999999997089-89989999999999999999998863306612013712107056
Q gi|254780360|r 5 VFRLNFFIVLL---KPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPI 80 (305)
Q Consensus 5 ~~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl 80 (305)
|.-+++|+||+ ||.++.++++|+++|.++|++ .++...+.+..+|+.++|++||++||++|||+|++|||||+||+
T Consensus 1 ~~~w~~y~~L~Rl~kPiG~~Lll~P~~~~l~lA~~g~p~~~ll~lf~~G~~lmRsagc~iNdi~Dr~iD~~v~RTk~RPl 80 (282)
T PRK12894 1 MIPWNAYVRLLRLNKPIGILLLWYPTAWALWMANQGFPSIDLLMIFLLGTVFMRSAGCVINDIADRHIDRHVARTQFRPL 80 (282)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99729999999330379899999999999998657898789999999999999985779982898715888867667755
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCC
Q ss_conf 65304789899988887766899988634458999999988865444544310266560588887766422110132368
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTG 160 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~ 160 (305)
|+|++|++||+.+..++...++.++. ..|..+..++..+... +.+| |++||+|++||+++|++++++|++||+|++|
T Consensus 81 asG~vs~~~A~~~~~~l~~~~~~~l~-~l~~~~~~l~~~~~~~-~~~Y-P~~KR~t~~pq~~LGl~f~~~~l~~~~a~~~ 157 (282)
T PRK12894 81 TSGEVSLSEAFILLFILLCASLLLLL-KLPINCFYFAVISVLI-TFLY-PFCKRFLNAPQLILGLAFSMGIPMAFIASGK 157 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56786598999999999999999999-9859999999999999-9999-9998602034699999999899999999718
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 85663211147888899999999986535666641013351243388778997434568989987642102210899999
Q gi|254780360|r 161 DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGII 240 (305)
Q Consensus 161 ~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ 240 (305)
+++.+++.++...++||++|||.||+||+|||+|.|+||+|+.+|++........+. .+..+..........+..|...
T Consensus 158 ~~~~~~~~L~~~~~~Wt~~yDtiYA~qD~~dD~k~GikS~ai~fG~~~~~~i~~~~~-~~~~l~~~~g~~~~~~~~~yl~ 236 (282)
T PRK12894 158 NLNSDFIVLFLINFSWIIAYDTMYAMTDKADDLKIGVKSTAIYFASYDRLIIALLLI-FLHSLWLVWAINKNAEWFFYLL 236 (282)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHH
T ss_conf 998899999999999999999999981585298739975178768664899999999-9999999999985550899999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999504889978999998798999999999999986
Q gi|254780360|r 241 VFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 241 ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
.+.. ..++.++. +..+++|+++|.+.|+.|+++|.++|++++++.
T Consensus 237 v~~~-a~~l~yq~---~~i~~~~p~~c~~aF~~N~~~G~iiF~gi~L~~ 281 (282)
T PRK12894 237 WCTA-AGILTYQL---KLIYARIPKNCFKAFLVSGYYGLVMWFAVGLAL 281 (282)
T ss_pred HHHH-HHHHHHHH---HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999-99999999---991699989999999980199999999999974
No 15
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=425.77 Aligned_cols=281 Identities=20% Similarity=0.191 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHH
Q ss_conf 65379999996268999999---9999999970-8989989999999999999999998863306612013712107056
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAI---YTAFVGIVLA-PGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPI 80 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~---~~~~~g~~la-~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl 80 (305)
-.|+|+|+||+|..+..+.+ +++.+..+.+ +|.+++..+++..+|.+.+|++||++||++|||+|++|||||+||+
T Consensus 24 p~klr~yl~Lir~~h~if~lpf~~~~~~~a~~a~~g~p~~~~l~~~~lg~v~~RsAgc~iNdi~DrdiD~~v~RTk~RPL 103 (313)
T PRK12888 24 PGRVRAFLRLVAIEHSVFALPFAYIAALTAMFAADRSVHWGDLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 103 (313)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 47799999999854809999999999999998617999999999999999999999999997744342567955578876
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCC
Q ss_conf 65304789899988887766899988634458999999988865444544310266560588887766422110132368
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTG 160 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~ 160 (305)
|+|++|++||+.+.+.+....+. +..++|+++..++..++.. .++| |++||+|++||+++|++++++|++||+|++|
T Consensus 104 ~sG~is~~~A~~~~~~~~~~~~~-~~~~ln~l~~~ls~~~~~~-~~~Y-p~~KRfT~~pq~~LG~a~~~~~l~~w~Av~g 180 (313)
T PRK12888 104 VTGAVSVRTAWTGALVALAVFLG-AAALLNPLCLALAPLAVAP-LVVY-PYAKRFTNFPHAVLGLAQAVGPVGAWIAVTG 180 (313)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56886799999999999999999-9999989999999999999-9999-9998876545799999999878899999728
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 85663211147888899999999986535666641013351243388778997434568989987642102210899999
Q gi|254780360|r 161 DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGII 240 (305)
Q Consensus 161 ~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ 240 (305)
+++.++++|+...++|+.+||++||+||+|||+|+|+||+|+++|+|.+...+..+...+..+....++....|..|+..
T Consensus 181 ~~~~~~~lL~~~~~~W~~~fDtiYA~qD~edD~k~Gi~S~a~~fG~~~~l~i~~~~~~~~~~ll~~~g~~~~l~~~y~~g 260 (313)
T PRK12888 181 TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWGSRVAHVVTFALFVWFGLATGAGALWWAG 260 (313)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 88789999999999999999898787165329874998527886850279999999999999999999997380999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999950488997899999-8798999999999999986608
Q gi|254780360|r 241 VFFLGYHFTLWAWRTFLCKEDKDIRVTKKL-FLESITYLFVLFTILMVDHLID 292 (305)
Q Consensus 241 ali~~~~~l~~a~~~~~~~~~~~~k~a~kl-F~~S~~yl~ilfl~liid~~i~ 292 (305)
..+.+..+.|+ .+. .+++|.+++.+. |+.|++.+.++|..+++|.++.
T Consensus 261 ~~~~~~ll~yq-~~l---i~~~d~~~~~~aFF~~N~~vglilf~~~l~d~llr 309 (313)
T PRK12888 261 LLLTAVAFAYE-HRI---VSPTDLSRVNRAFFTANGFIGIALFGFALGDLLVR 309 (313)
T ss_pred HHHHHHHHHHH-HHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999-999---27888899999999850399999999999999975
No 16
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=422.95 Aligned_cols=281 Identities=19% Similarity=0.222 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHC
Q ss_conf 365379999996268999999999999997089------89989999999999999999998863306612013712107
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG------HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTAS 77 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~------~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 77 (305)
-..|+|.|.|+.|.+++...+.-+..|.++|.. .+++..+++..++.+.+|++||++||++|||+|++||||++
T Consensus 4 ~~~ki~~~~~lik~~htiFalpfa~~~~~la~~~~~~~~~~~~~~l~~~~~a~v~aRsag~~iN~~~Dr~iD~~~~RT~~ 83 (291)
T PRK12874 4 FTHKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNGTGWFGFKLLILGILAAVSARNFAMGFNRLMDRDIDKDNPRTAN 83 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 89999999999987008988999999999986327887875599999999999999999989984634275357843578
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEC
Q ss_conf 05665304789899988887766899988634458999999988865444544310266560588887766422110132
Q gi|254780360|r 78 RPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWAS 157 (305)
Q Consensus 78 RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a 157 (305)
||+|+|++|++||+.+.+.++.++.. +..++|++|..++..+++. +.+| |++||+|++||+++|++.+++|++||+|
T Consensus 84 Rpl~sG~is~~~a~~~~~~~~~~~~~-~~~~lN~l~~~ls~~~l~~-~~~Y-p~~KRft~~~~~~LG~~~~~~pl~~w~A 160 (291)
T PRK12874 84 RPSVDGRISRKGMVIFIVINALIFIV-VSYFINTLAFKLSFPFLIV-LGGY-SYFKRFSSLAHLVLGLSLGLAPIAGSVA 160 (291)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77876777999999999999999999-9999869999999999999-9999-8898365370999999988899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 36885663211147888899999999986535666641013351243388778997434568989987642102210899
Q gi|254780360|r 158 VTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTY 237 (305)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~y 237 (305)
++|++++++++++...++|+.+||+.||+||+|||+|+|+||+|+.+|+|.+...+..+++.+..+.+........|..|
T Consensus 161 v~g~~~~~~~~L~~~~~~W~~gfD~iYA~qD~e~D~~~Gl~S~p~~fG~~~~l~i~~~~h~~~~i~~~~~g~~~~l~~~y 240 (291)
T PRK12874 161 VSGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWEAHLGFFA 240 (291)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74999899999999999999999999997758649986997656886805279999999999999999999997516999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999950488997899999879899999999999998660
Q gi|254780360|r 238 GIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 (305)
Q Consensus 238 li~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i 291 (305)
+....+.+..+.| ..+.. ++++.+.++++|+.|++.+.++++++++|.+.
T Consensus 241 ~i~~~i~~~ll~y-qh~lv---~~d~~~~~~afF~~N~~iglilf~~illd~l~ 290 (291)
T PRK12874 241 YLGVIVSALILLY-EHYLV---RKDFKKIDRAFFTLNGYLGIVFFIFIVLDVLF 290 (291)
T ss_pred HHHHHHHHHHHHH-HHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999-99996---28896799999997279999999999999973
No 17
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=422.80 Aligned_cols=282 Identities=14% Similarity=0.154 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHH
Q ss_conf 53799999962689999999999999970898-99899999999999999999988633066120137121070566530
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH-ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQ 84 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~-~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~ 84 (305)
.|+|.|.|+.|.+++...+.-+..|+++|.++ +++..+++.++|.+.+|++||++||++|||+|++|||||+||+|+|+
T Consensus 1 ~~~~~~~~~i~~~htiFalPfa~~~~~~A~~~~p~~~~l~l~~lg~v~~Rsagc~iNdi~DrdiD~~v~RTk~RpL~sG~ 80 (286)
T PRK12895 1 MNFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGR 80 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 97899999999976998899999999997799998899999999999998999899987060434579888999798889
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCC
Q ss_conf 47898999888877668999886344589999999888654445443102665605888877664221101323688566
Q gi|254780360|r 85 ISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSI 164 (305)
Q Consensus 85 is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~~ 164 (305)
+|++||+.+..++..++... .++.|+.|..++..++.+ +.+| |++||+|++||+++|++.+++|++||+|++|+++.
T Consensus 81 is~~eA~~~~~~~~~~~~~~-~~~ln~~~~~ls~~al~l-~~~Y-P~~KRft~~pq~~LG~~f~~g~l~a~~Av~~~~~~ 157 (286)
T PRK12895 81 IKMREAIAFTIIFIAIFEIC-TFLLNRLVFILSPIVIFL-FIID-PFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAFPY 157 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHH-HHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 79999999999999999999-997179999999999999-9985-66654255509999999998999999998088872
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf --321114788889999999998653566664101335124338877899743456898998764210221089999999
Q gi|254780360|r 165 --ASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVF 242 (305)
Q Consensus 165 --~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~al 242 (305)
.+++++....+|+.+||+.||+||+|||+|+|+||+|+.+|+|.+......+++.+..+......... +..|+....
T Consensus 158 ~~~~~lL~~a~~~W~~gfDtiYA~qD~edD~k~Gi~S~a~~fG~~~~l~i~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~ 236 (286)
T PRK12895 158 NLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TLWYLAALI 236 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 0899999999999999998999706732099849535699868821899999999999999999999984-799999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 9999999999999950488997899999879899999999999998660845
Q gi|254780360|r 243 FLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMK 294 (305)
Q Consensus 243 i~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i~~~ 294 (305)
+....+. ++....+++++.+.++++|+.|++.+.++++++++|...|.+
T Consensus 237 ~~~~ll~---yq~~~~~~~d~~~~~~afF~~N~~iGli~~~~iil~~~fp~~ 285 (286)
T PRK12895 237 IIYTLVI---YQHLIIDPRNPINKRMSFFNANSFIGFVFLIGIILSLRFPIR 285 (286)
T ss_pred HHHHHHH---HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999---999994789869999999988539999999999999826456
No 18
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=410.51 Aligned_cols=280 Identities=15% Similarity=0.156 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHH
Q ss_conf 36537999999626899999999999999708-98998999999999999999999886330661201371210705665
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPL 82 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~-~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~ 82 (305)
+-+|+|.|+||+|..++++.+..+.+|.++|. |.++...+++..+|.+.+|++||++||++|||+|++|||||+||+|+
T Consensus 11 ~~~K~~~y~~l~r~~~~if~Lp~a~~~~~lA~~g~p~~~~l~~~~lg~~~~Rsagc~iNdi~Dr~iD~~v~RT~~RPL~s 90 (299)
T PRK13106 11 SRSKLYIYLRFLRIEQTFFSLPMAYMGAFLAIRGIPPIRTLILIFLALFFLRTAGMTNDNLADREIDAKNPRTRTRPLVT 90 (299)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 57799999999998249999999999999972899989999999999999999998999860517446896668888766
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCC
Q ss_conf 30478989998888776689998863445899999998886544454431026656058888776642211013236885
Q gi|254780360|r 83 GQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV 162 (305)
Q Consensus 83 g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~ 162 (305)
|++|++||+.+...+.+.++.. .+++|+.+..++..+..+ +.+| |++||+|++||+++|++.+++|++||.|++|..
T Consensus 91 G~is~~~A~~~~~~~~~~~~~~-~~~ln~~~~~ls~~~~~~-~~~Y-P~~KRft~~pq~~LG~~~~~~~~~~~~a~~g~~ 167 (299)
T PRK13106 91 GAITVREAWLLIAAGLIGYFAS-AYLLNRYALLLSPIVALI-AMSY-PYMKRYTAFANYHLASVQGLAVFSGAVASLGLE 167 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8879999999999999999999-999749999999999999-9999-998873013369999999978999999985320
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf --------663211147888899999999986535666641013351243388778997434568989987642102210
Q gi|254780360|r 163 --------SIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFAS 234 (305)
Q Consensus 163 --------~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g 234 (305)
...+|+++....+|+.+||+.||+||+|||+|.|+||+|+.+|++ +...+..+.+.+..+.+........|
T Consensus 168 ~~~~~~~~~~~~~ll~~a~~~W~~~yDtiYA~qD~~dD~~~Gi~S~a~~fG~~-~~~~~~~~~~~~~~ll~~~g~~~~lg 246 (299)
T PRK13106 168 ATSLTQVLRSVPWLFVIATILWAVGFDLYNHIPDADFDRKMGLHSFAVLLGNK-ALAFAGLNQLASVLLAIAGDIAYGLG 246 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01235466789999999999999998598873782232765987028888577-99999999999999999999998627
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 899999999999999999999950488997899999879899999999999998660845
Q gi|254780360|r 235 VTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMK 294 (305)
Q Consensus 235 ~~yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i~~~ 294 (305)
+.|+....+....+.+. .. ..+++| +.|.|+.|++.+.++++++++|+++..|
T Consensus 247 ~~~~~~~~i~~~~~~yq---~~-l~~~~d---~~~aF~~N~~iGlilf~gi~ld~llg~~ 299 (299)
T PRK13106 247 PIAYAATVLHGLIMAYA---YY-LASKGN---FGRAFYYNIYSSIVLGLGIIIDVLLGIP 299 (299)
T ss_pred HHHHHHHHHHHHHHHHH---HH-HCCCCH---HHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999---99-589530---9999986189999999999999981899
No 19
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=393.74 Aligned_cols=279 Identities=18% Similarity=0.265 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHH
Q ss_conf 3653799999962689999999999999970898-998999999999999999999886330661201371210705665
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH-ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPL 82 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~-~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~ 82 (305)
|.+|+|.|+||+||+++.+..+++++|+++|.++ ++...++...+++.+++++||++||++|+|+||+|+ ++||+|+
T Consensus 1 m~sklk~y~~L~rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~l~~~l~~~a~~~iNd~~D~diD~~n~--~~RPlps 78 (281)
T PRK12884 1 LRAKLKAYLDLLRPEHGLMAGIAVVLGAILALGFLPDLTKALLGFLSAFFASASAFALNDYFDVEIDRINR--PDRPIPS 78 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC--CCCCCCC
T ss_conf 92789999999658778999999999999976799978999999999999999998853624084250068--9998888
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCC
Q ss_conf 30478989998888776689998863445899999998886544454431026656058888776642211013236885
Q gi|254780360|r 83 GQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV 162 (305)
Q Consensus 83 g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~ 162 (305)
|++|++||+.+++.+...|..+ .+..|+.+..+...+.+. .++|+..+||+++++++++|+++++||+.||.+++++.
T Consensus 79 G~is~~~A~~~~~~l~~~~~~~-~~~l~~~~~~l~~~~~~~-~~~Y~~~lK~~~~~~~~~~~~~~g~~~l~g~~a~~~~~ 156 (281)
T PRK12884 79 GRVSLREALLLAIALFILGIVA-AYLISPLAFAVVVLVLVL-GILYDYKLKEYGLIGNLYVAFLTGMTFIFGGIAAGELI 156 (281)
T ss_pred CEECHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6278999999999999999999-999999999999999999-99999999957653599999999999999999973897
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 66321114788889999999998653566664101335124338877899743456898998764210221089999999
Q gi|254780360|r 163 SIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVF 242 (305)
Q Consensus 163 ~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~al 242 (305)
+++++.++...++||++||+.++++|+|||+++|+||+|+++|+|++++.+..+++.++.+++.|+..+..|..|+..++
T Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~Gi~tlpv~~G~~~a~~~~~~~~i~~~~l~~~~~~~~~~g~~y~~~~~ 236 (281)
T PRK12884 157 TEKSWLLAAMAFLMDLGREIAKDIEDVEGDRKRGARTLAILYGEKIAGRIAAALFIIAVALSPIPYLLGWLNYLYLAPIL 236 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 59999999999999999999998052541987699267732778989999999999999999999999850199999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999504889978999998798999999999999986
Q gi|254780360|r 243 FLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 243 i~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
..+..+++.+++.+ +++|.+.++|.|+.|..++.+.+++++++.
T Consensus 237 ~~~~~~l~~~~~l~---~~~~~~~~~~~~~~~~~~m~l~~iaf~iga 280 (281)
T PRK12884 237 LADLIFLYSAYRLL---RSQDRETINKIRRITLTGMLLALVAFAIGA 280 (281)
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999992---499999999999999999999999999837
No 20
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=391.25 Aligned_cols=272 Identities=21% Similarity=0.254 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHH
Q ss_conf 5379999996268999999999999997089-899899999999999999999988633066120137121070566530
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQ 84 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~ 84 (305)
..+|+|+||+||+++.++.++++.|+++|.+ .+++...+...+++.+++++||++||++|||+|++|+ |+||+|+|+
T Consensus 2 m~lk~y~~L~kp~~~~l~~~t~~~G~~la~~~~~~~~~~~~~~~~~~l~~~a~~~iNd~~D~eiD~in~--p~RPlpsG~ 79 (276)
T PRK12882 2 MSVRGYLELMRPGNAVVAGLAAFIGALIAGGILTSPADSGLAFAAVLLVTGAGNAINDYFDREIDKINR--PDRPIPSGA 79 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCC
T ss_conf 958999999569899999999999999975889968999999999999999999998475160057889--999887688
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCC
Q ss_conf 47898999888877668999886344589999999888654445443102665605888877664221101323688566
Q gi|254780360|r 85 ISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSI 164 (305)
Q Consensus 85 is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~~ 164 (305)
+|++||+.+++.+++.|..+ .+.+|+.+..+...+.+.+ ++|+..+||.+++++.++|..++.+|+.||.+++++...
T Consensus 80 Is~~~Al~~~~~l~~~~~~l-~~~~n~~~~~~~l~~~~~~-~iYs~~lKr~~~~~ni~ig~~~g~~~l~g~~~~~~~~~~ 157 (276)
T PRK12882 80 VSPKGALAYSVLLFAAGVAL-AFLLNPLCLAIALFNSLLL-ILYAQTLKGTPGLGNASVAYLTGSTFLFGGAAVGLEGLL 157 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 59999999999999999999-9999999999999999999-999999987766068999998889999999998376328
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 32111478888999999999865356666410133512433887789974345689899876421022108999999999
Q gi|254780360|r 165 ASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFL 244 (305)
Q Consensus 165 ~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali~ 244 (305)
..+.++...++||++||+.++++|+|||+++|+||+|+++|+|+|++++..+++.+++++++|++.+..|..|++.+.+.
T Consensus 158 ~~~~l~~~~f~~~~~~~~~~d~~d~egD~~~Gi~tlPv~~G~~~t~~~~~~~~~~~~~~sllp~~~~~~g~~Yl~~~~~~ 237 (276)
T PRK12882 158 ALLVLFALAALATLAREIVKDAEDIEGDRAEGARTLPIVIGVRKASYLAAAFVLGAVLASPVPYLLSIWGLWYLVLVAPA 237 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999989778899769962050137688999999999999999999999987219999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999995048899789999987989999999999
Q gi|254780360|r 245 GYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTI 284 (305)
Q Consensus 245 ~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~ 284 (305)
+..+++.+++.+ +++|.++|+|.|+.|+.++.+.|++
T Consensus 238 ~~~~l~~~~~~~---~~~~~~~a~~~~k~s~~~~~l~F~~ 274 (276)
T PRK12882 238 DLVILFAAIRGL---SCTDPTKSSKLLKAGMFAALAAFVV 274 (276)
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999983---7999999999999999999999996
No 21
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=386.04 Aligned_cols=280 Identities=14% Similarity=0.131 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHH
Q ss_conf 53799999962689999999999999970898----------99899999999999999999988633066120137121
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH----------ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMART 75 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~----------~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT 75 (305)
.|+|.|.|+.|.+++...+.-++.|.++|.+. ..+..+++..++.+.+|++||++||+.|||+|++||||
T Consensus 1 ~k~k~~~~likf~HtiFalPFa~~~~~~a~~~~~~~~~~~~~~~w~~l~~~~~a~v~aRsagm~~Nr~~Dr~iD~~npRT 80 (299)
T PRK12876 1 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISQNLFSKEGFKIIVLGGSAFFCARTVGIIVNQIIDRAIDKKNPRT 80 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 96999999998856999899999999999627655555444324999999999999997898599986241547899777
Q ss_pred HCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEE
Q ss_conf 07056653047898999888877668999886344589999999888654445443102665605888877664221101
Q gi|254780360|r 76 ASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGW 155 (305)
Q Consensus 76 ~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~ 155 (305)
++||+|+|++|++||+.+.+++...... +.+++|++|..++..+.+. ..+| |++||+|++||+++|++.+++|++||
T Consensus 81 ~~Rpl~~G~is~~~a~~~~~~~~~~~~~-~~~~lN~l~~~Ls~~~l~~-~~~Y-p~~KRft~~~h~~LG~~~~~a~~~~~ 157 (299)
T PRK12876 81 SKRVLPAKLLSINFSWLLLLLCSFLFLS-LCWFLNPLCFSLAVLSTLL-MIVY-PYTKRVTFLCHWILGLVYYLAILMNF 157 (299)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 8998878887998999999999999999-9999729999999999999-9997-87776121179999999999999999
Q ss_pred ECCCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 3236885663-----211147888899999999986535666641013351243388778997434568989987642-1
Q gi|254780360|r 156 ASVTGDVSIA-----SLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPT-M 229 (305)
Q Consensus 156 ~a~~~~~~~~-----~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~-~ 229 (305)
+|++++.... ++++.....+|+.++|+.||+||+|||||.|+||+|..+|++++.+.+..+++.+....+... .
T Consensus 158 ~Av~~~~~~~~l~~~~~l~~~~~~~wvagfD~iYA~qD~e~D~k~Gl~S~p~~fG~~~al~ia~~~h~~~~l~~~~~g~~ 237 (299)
T PRK12876 158 FAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDREEGLFSIPARFGEKKAIRIASVNLIVSALAYILSGYF 237 (299)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99818751179999999999999999975357887167754998498633898696008999999999999999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0221089999999-9999999999999950488997899999879899999999999998660
Q gi|254780360|r 230 LGFASVTYGIIVF-FLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 (305)
Q Consensus 230 ~~~~g~~yli~al-i~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i 291 (305)
.+..+..|..... +....+. ++.+...++++.+.++++|+.|++.+.++|+.++.|..+
T Consensus 238 ~~~~~~~y~~~l~~~~~~l~~---~~h~~~~~~~~s~~~~aFF~~N~~igli~Fi~ii~~~~l 297 (299)
T PRK12876 238 VSNKKEFYLCSLIPLVVILKT---IKHYSLIDKKKSELEQKFFLGNIYLALSFFVNMIGLFLL 297 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 985489999999999999999---999997289950588999985089999999999999970
No 22
>TIGR01475 ubiA_other 4-hydroxybenzoate polyprenyltransferase, putative; InterPro: IPR006371 A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in IPR006370 from INTERPRO. Protoheme IX farnesyltransferase (heme O synthase) (IPR006369 from INTERPRO) is more distantly related. Because no species appears to have both this protein and a member of IPR006370 from INTERPRO, it is likely that this family of sequences represent 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, and the Chlamydias..
Probab=100.00 E-value=0 Score=380.17 Aligned_cols=279 Identities=19% Similarity=0.261 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHH
Q ss_conf 3799999962689999999999999970898----------998999999999999999999886330661201371210
Q gi|254780360|r 7 RLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH----------ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTA 76 (305)
Q Consensus 7 k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~----------~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 76 (305)
|+|.|.|+.|.+++...+.-+..|+++|.+. +++..+++..++.+.+|++||+.||+.|+|||++|||||
T Consensus 1 k~~~il~l~k~ehT~FaLPFa~~g~lla~~~~N~t~Plfs~~~~~~l~Li~~A~~~ARt~aM~~Nr~~D~~ID~~NPRtk 80 (301)
T TIGR01475 1 KIKDILELIKFEHTLFALPFAYAGALLAAKLANDTAPLFSLPSLKTLILILVALVSARTAAMAFNRIIDEEIDAKNPRTK 80 (301)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCC
T ss_conf 95689889999999856999999999970288986320466549999999999999999975652230631234686978
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEE
Q ss_conf 70566530478989998888776689998863445899999998886544454431026656058888776642211013
Q gi|254780360|r 77 SRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWA 156 (305)
Q Consensus 77 ~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~ 156 (305)
|||+|+|+||+|||+.+.++. .+-+....+++|++|+.++....+. ..+| |++||+|++||+++|.+.+++|+.||.
T Consensus 81 ~R~lv~G~is~~ea~~~~~~~-~~lF~~~~~f~N~laf~Lsp~v~l~-~~~Y-P~~KRfT~l~H~~LG~~~glA~~~G~~ 157 (301)
T TIGR01475 81 NRPLVSGKISKKEARTLIILS-LALFLIASYFLNPLAFILSPVVLLV-LIIY-PYLKRFTALCHLVLGSVLGLAPLAGWV 157 (301)
T ss_pred CCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 897877643399999999999-9999999999989999986999999-9970-227776486779999999999877266
Q ss_pred CCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2368856--------63211147888899999999986535666641013351243388778997434568989987642
Q gi|254780360|r 157 SVTGDVS--------IASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPT 228 (305)
Q Consensus 157 a~~~~~~--------~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~ 228 (305)
|+.|+++ ..+++++....+|+.++|..|++||.|.|||.|+||.|+++|.|++...+.+++..++...++..
T Consensus 158 av~~~~~~sl~~~~~~~a~~l~~~~~fW~aGFD~iY~~qD~eFD~~~gL~Sipa~fG~~~aL~ia~~~h~~~~~~~ll~~ 237 (301)
T TIGR01475 158 AVIGEISISLDELLLLVAVLLGIGVVFWVAGFDVIYAIQDYEFDKKNGLKSIPARFGVKAALKIASLSHVITFVLLLLLG 237 (301)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50377310166599999999999999999999998752483544450865421330558999999999999999999999
Q ss_pred HCCCC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10221---089999999999999999999995048899789999987989999999999999866
Q gi|254780360|r 229 MLGFA---SVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHL 290 (305)
Q Consensus 229 ~~~~~---g~~yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~ 290 (305)
+.... |.+|.....+.+...+ +.++..+. ..+..+-.+++|..|.+.+.++++.+.+|..
T Consensus 238 ~~~~~~~lg~~~~l~~~~~~~~l~-y~H~i~~~-G~~~~~~~~~FF~~N~~~si~~l~~~~~d~~ 300 (301)
T TIGR01475 238 FYVGEKALGYIALLALLLIGLILV-YEHSIVDP-GKDLSKIQRAFFTVNGFLSIIFLIGVIIDVL 300 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997026899999999999999999-88877437-8567689899876989999999999999872
No 23
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=0 Score=374.08 Aligned_cols=277 Identities=20% Similarity=0.240 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHH
Q ss_conf 53799999962689999999999999970898--9989999999999999999998863306612013712107056653
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH--ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLG 83 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~--~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g 83 (305)
.++|+|+||+||+++.++.++++.|+.++++. +++..+.+..+++.+++++||++||++|||+|++| |++||+|+|
T Consensus 1 m~ik~y~eL~kp~~~~l~~~t~~~g~~la~~~~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~in--~~~RPlpsG 78 (280)
T PRK09573 1 MSLKAYFELIRPKNCLTASIGAFIGGLIASNFKIAHLKKLILAALVVFLVCAGGNIINDIYDIEIDRIN--KPNRPIPSG 78 (280)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCC
T ss_conf 988899999778999999999999999966777665999999999999999999999989989667314--899868889
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
Q ss_conf 04789899988887766899988634458999999988865444544310266560588887766422110132368856
Q gi|254780360|r 84 QISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVS 163 (305)
Q Consensus 84 ~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~ 163 (305)
+||++||+.++..+...|..+ .++.|+.+..+...+.+++ ..|+..+||++.+++.++|..+++||+.||.++++..
T Consensus 79 ~IS~~~A~~~~~~l~~~g~~l-~~~~n~~~~~~~~~~~~l~-~~Y~~~lK~~~~~~n~ii~~~~g~~~~~g~~a~~~~~- 155 (280)
T PRK09573 79 RISLNSAKVFSILLFIVGIIL-SLFINIYAFLIAVLNSILL-YQYAKDLKKTGLIGNLIVALLTGLSFIFGGIAVGNVG- 155 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH-
T ss_conf 707999999999999999999-9999999999999999999-9999999737576999999999999999999981258-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 63211147888899999999986535666641013351243388778997434568989987642102210899999999
Q gi|254780360|r 164 IASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFF 243 (305)
Q Consensus 164 ~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali 243 (305)
..+.++...++|+.+|++.++++|.|||+|+|+||+|+++|+|+|++++..+++.+++++..|++.+..|..|+..+.+
T Consensus 156 -~~~~l~l~~f~~~~~~~~~~~~~d~e~D~~~Gv~tlPv~~G~~~t~~~i~~~~~l~~~~~~lp~~~g~~g~~Yl~~~~~ 234 (280)
T PRK09573 156 -KTIILFLCAFFSTWSREIIKDIEDVEGDKKEGVITLPIKYGIKKSIYIAKILLVLLIVLSPLPYLLGIFGIYYLIVVVI 234 (280)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf -9999999999999999999999986569986994357632789999999999999999999999997650999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999950488997899999879899999999999998660
Q gi|254780360|r 244 LGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 (305)
Q Consensus 244 ~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i 291 (305)
++..+++.+++.++ +++.++++|.++.+..|+.+.++++++|++-
T Consensus 235 ~~~~~l~~~~~l~~---~~~~~~a~~~~~~~~~~m~l~lla~li~~l~ 279 (280)
T PRK09573 235 CDLLFILSIIILLR---NPSKEGASKASKVIKIAMILGLIAFLLGSLP 279 (280)
T ss_pred HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999985---8989999999999999999999999982058
No 24
>KOG1380 consensus
Probab=100.00 E-value=0 Score=389.92 Aligned_cols=281 Identities=25% Similarity=0.443 Sum_probs=266.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCC
Q ss_conf 37999999626899999999999999708989989999999999999999998863306612013712107056653047
Q gi|254780360|r 7 RLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQIS 86 (305)
Q Consensus 7 k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is 86 (305)
-++.|+||+|||++.+++.++.+||.++++..++..+....+|+.+++++++++||+.|.+.|.+|.||++||+|+|+||
T Consensus 93 ~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~is 172 (409)
T KOG1380 93 YARCYLELSKPRLTMLVVLTTMTGYALAPGPFSFPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRIS 172 (409)
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 58899874655068887461234311156687830368986416887763676654316871265676416664447657
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC
Q ss_conf 89899988887766899988634458999999988865444544310266560588887766422110132368856632
Q gi|254780360|r 87 PWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIAS 166 (305)
Q Consensus 87 ~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~~~~ 166 (305)
+..|+.|+.+.+..|..++++..||++++++..++++|.++||| |||....|+|+|+++|++||++||+|.+|.+++.+
T Consensus 173 p~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP-lKrihiinTWvGavVGAIPPLMGwAAasg~l~~ga 251 (409)
T KOG1380 173 PLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP-LKRIHIINTWVGAVVGAIPPLMGWAAASGLLDPGA 251 (409)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCHHEEECCCCC-HHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCH
T ss_conf 37888999886155511110153678888731202100000362-33410134377777523774110343036778408
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 11147888899999999986535666641013351243388778997434568989987642102210899999999999
Q gi|254780360|r 167 LVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGY 246 (305)
Q Consensus 167 ~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali~~~ 246 (305)
|+|..+.|.||+|||.+++|..|+||+|+|++|++++++.- .++..+.|++++..++......+..+++|-+.+..++.
T Consensus 252 ~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l-~rr~alr~s~a~~~L~~~~~~~~lT~~wf~i~s~~~na 330 (409)
T KOG1380 252 MILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGL-CRRVALRYSLAFLPLSYAAPSTDLTTWWFAIESLPLNA 330 (409)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCHHHHHCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHH
T ss_conf 89998998830630666544301135534678999656431-16789998888852300254357655124643420769
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999504889978999998798999999999999986608
Q gi|254780360|r 247 HFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLID 292 (305)
Q Consensus 247 ~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i~ 292 (305)
++.+.++|+++ ++|.+++||+|+.|.++++++++.+++.+...
T Consensus 331 ~l~~~afkFY~---~~d~~~aRklF~aSLlhLP~lmll~l~~k~~~ 373 (409)
T KOG1380 331 YLAYLAFKFYR---DRDYHNARKLFFASLLHLPLLMLLMLIHKKGR 373 (409)
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999888743---65434689999999998999999999875212
No 25
>PRK13593 consensus
Probab=100.00 E-value=0 Score=364.40 Aligned_cols=271 Identities=21% Similarity=0.272 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHH
Q ss_conf 65379999996268999999999999997089-89989999999999999999998863306612013712107056653
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLG 83 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g 83 (305)
-+|+|+|+||+||+++.+..++++.|++++.+ .+++.......+++++++++||++||++|||+|+.|+ |+||+|+|
T Consensus 5 r~~ir~yleL~RP~n~~~a~~~~~~G~~ia~~~~~~~~~~~~~~~~~~l~~aagn~iND~~D~eID~iN~--P~RPIPsG 82 (283)
T PRK13593 5 RETIRGLVELMRPGNAVAAGVLTFIGAFVAGGFAVTPAHVTGAVAATILATAAGNAINDYFDRAIDKINR--PDRPIPRG 82 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCC
T ss_conf 9999999999718899999999999999958999988999999999999999999997487651431038--99988888
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
Q ss_conf 04789899988887766899988634458999999988865444544310266560588887766422110132368856
Q gi|254780360|r 84 QISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVS 163 (305)
Q Consensus 84 ~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~ 163 (305)
+||++||+.++..+...|..+ ....|+.+..++..+... .+.|+..+||.+..+++++|..++.+++.||+|++++.+
T Consensus 83 ~IS~~~Al~~~i~l~~~~~~l-~~~l~~~~~~i~~~~~~~-~~~Y~~~lK~~~~~gNi~v~~~~g~~~l~G~~av~~~~~ 160 (283)
T PRK13593 83 AVSPRGALVYSVFLFVAAVVL-TSVLPLLAIVIAAMNLLA-LVAYTELFKGLPGVGNALVAYLTGSTFLFGAAAVGRILA 160 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 639999999999999999999-999889999999999999-999999995487500199999999999999999758887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 63211147888899999999986535666641013351243388778997434568989987642102210899999999
Q gi|254780360|r 164 IASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFF 243 (305)
Q Consensus 164 ~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali 243 (305)
+..+.++...|+||++|++..+++|.|||+++|+||+|+++|+|+|++++..+.+..+..+.+|++.+..|..|++...+
T Consensus 161 ~~~~~l~~~~fl~t~~reiikdi~DieGD~~~G~~TLPv~~G~~~a~~ia~~~~i~~~~~s~lpy~~g~~g~~YLi~v~~ 240 (283)
T PRK13593 161 FGVVVLFALAALATAAREIIKDVEDLDGDRAEGLRTLPIVIGVTRALRVAAGFVVVAVIASPVPYLIGIFGWWYLVLVVP 240 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38999999999999999999999864219876997588162689999999999999999999999986707999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999995048899789999987989999999999
Q gi|254780360|r 244 LGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTI 284 (305)
Q Consensus 244 ~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~ 284 (305)
.+..+++.++|.. +|+.+++|.+|.+.....+-|+.
T Consensus 241 ~~~~~l~~~~~~~-----~~~~~~~~~~K~~m~~~~iaF~~ 276 (283)
T PRK13593 241 ADMIMLIAVWRSP-----DDPTQGQQLLKRGMFVAAAAFVV 276 (283)
T ss_pred HHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998664-----68678999999999999999999
No 26
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=0 Score=341.89 Aligned_cols=277 Identities=16% Similarity=0.145 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC-CHH---
Q ss_conf 36537999999626899999999999----999708-989989999999999999999998863306612013-712---
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFV----GIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYYDADIDKM-MAR--- 74 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~----g~~la~-~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~-~~R--- 74 (305)
|.+|+|+|++|||.+ .+++|++++ +.+.|. |.+++...++..+|+.++|+|||++||+.|||+||+ ++|
T Consensus 1 m~e~l~ayi~LtR~~--~ll~WP~lw~~~Lal~~a~~g~~~~~~l~if~Lg~vlmrsAGCviNDyaDR~~D~~~ve~~v~ 78 (297)
T PRK12871 1 MKETLKAYIDLTRAH--FLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLT 78 (297)
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHCCCHHHCCCCCC
T ss_conf 946899999999883--998889999879999986469997679999999999997057511003431022010244210
Q ss_pred -----HHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHH
Q ss_conf -----1070566530478989998888776689998863---4458999999988865444544310266560--58888
Q gi|254780360|r 75 -----TASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLA---INWVSATLLFMSIFCYVVIYTIWLKRFTPQN--IVIGG 144 (305)
Q Consensus 75 -----T~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~---~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~--~~~~~ 144 (305)
||+||+|||++|+|||+.+++++...++.+.... .|..+..++..+... +.+| |++||.|++| |+.++
T Consensus 79 r~~r~~k~RPLpsG~vs~keAl~lf~~L~~~~~~LvL~Lp~~~~~~~~~~~l~A~~l-a~~Y-PfmKR~t~~Pqa~L~g~ 156 (297)
T PRK12871 79 RYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGI-EAFY-QVKKRNQKYPVAQLLGR 156 (297)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHH-HHHHCCCCCCHHHHHHH
T ss_conf 025665689799888688999999999999999999983253079999999999999-9998-98853660329999999
Q ss_pred HHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77664221101323688566321114788889999999998653566664101335124338877899743456898998
Q gi|254780360|r 145 IAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVG 224 (305)
Q Consensus 145 i~ga~~~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~lls 224 (305)
..++.+|++|++ ++|+++..+|+++....+||++||+.||++|+|||+|.|+||+|+.+|+|.+...+..|+......+
T Consensus 157 ~~f~~~p~a~aa-~~G~~~~~~~Ll~~~~l~WTvAYDT~Yam~DredDlkiGvKStAILFG~k~~~~~i~~~~~l~~~~~ 235 (297)
T PRK12871 157 TDFTLFPAAGYL-CYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAA 235 (297)
T ss_pred HHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 987578999999-8199878999999999999999999998714215485283032212167633799999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 764210221089999999999999999999995048899789999987989999999999999866
Q gi|254780360|r 225 VLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHL 290 (305)
Q Consensus 225 ll~~~~~~~g~~yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~ 290 (305)
+.... ..+.+-+.+-+..-..+.-+.+.+++.++. ..|.|.|..+-..+.+.-.+++.|.+
T Consensus 236 l~~~~--~~~~~~l~~~~~g~~ll~~~~~~l~~~~~~---~~~~~a~~~~h~~~~~~~~~~~~~~~ 296 (297)
T PRK12871 236 IFFLR--ELGPIALYGFLAGFVLLAGANLYLWKEKSQ---DAGMKILPLYHASLVIYAVSIILDFI 296 (297)
T ss_pred HHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99997--526376999999999999999999752585---51788888875426777588677520
No 27
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=0 Score=329.22 Aligned_cols=269 Identities=18% Similarity=0.250 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHH
Q ss_conf 5379999996268999999999999997089-899899999999999999999988633066120137121070566530
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQ 84 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~ 84 (305)
.|+|+|+||+||+++.+..++++.|+++|.+ .++....++..+++++++++||++||++|+|+|+.|+ ||||+|+|+
T Consensus 1 m~lk~yleL~Rp~n~~~a~~~~~~g~~ia~~~~~~~~~~~l~~l~~~~~~aag~~iND~~D~eiD~iN~--p~RPipsG~ 78 (275)
T PRK12883 1 MEVKAFIEIMRPHNCILAGIVGILGSLVAYEGIPDIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINR--PNRPLPRGA 78 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCC
T ss_conf 968999999728778999999999999984689978999999999999999999998588884054558--999887776
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCC
Q ss_conf 47898999888877668999886344589999999888654445443102665605888877664221101323688566
Q gi|254780360|r 85 ISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSI 164 (305)
Q Consensus 85 is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~~ 164 (305)
+|++||+.++..+...|..+ .+++|+.+..++..+.+. .++|+..+||.+...+++.|...+.+|+.|+.++ ++.+.
T Consensus 79 IS~~~A~~~~~~l~~~g~~l-~~~ln~~~~~l~~~~~~l-~~~Ys~~lK~~~l~gNi~va~~~g~~~l~g~~a~-g~~~~ 155 (275)
T PRK12883 79 MSRKAALYYSVLQYAIGLAL-AYFLNIWAFLFALIAYVL-TFIYAWKLKPLPFIGNVVVALLTAATPIYGAVGV-GRIGL 155 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCH
T ss_conf 68999999999999999999-999739999999999999-9998998665885599999999999999999995-75409
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 32111478888999999999865356666410133512433887789974345689899876421022108999999999
Q gi|254780360|r 165 ASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFL 244 (305)
Q Consensus 165 ~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali~ 244 (305)
.+.++...|+|+.++|+.+++||+|||+++|+||+|+++|+|++.+.+..+.+..+.++.+|+..+. |..|+.. ...
T Consensus 156 -~~~l~~~afl~~l~reivkdieD~egD~~~G~~TlPi~~G~~~a~~ia~~~~~l~~~~s~lp~~~g~-~~~y~~~-i~v 232 (275)
T PRK12883 156 -AGYLAICAFLVNVSREIMKDIEDIEGDMAKGAKTLPIIIGKKRAAYIGAIFGFLTVIASFLPVKVGI-GLGYLPI-IPV 232 (275)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHH
T ss_conf -9999999999999999999999861098769957378946797999999999999999999999977-3999999-999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999995048899789999987989999999999
Q gi|254780360|r 245 GYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTI 284 (305)
Q Consensus 245 ~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~ 284 (305)
+..+++.+++..+ ++++.++++|.+|.+..-+.+-|..
T Consensus 233 ~~~~~~~~~~~~~--~~~~a~~~~~~lk~~m~l~liaf~~ 270 (275)
T PRK12883 233 DAMILKASIDVLR--DPETAHKGQKLLKIATFLAVISFLI 270 (275)
T ss_pred HHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999964--9222699999999999999999999
No 28
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=328.97 Aligned_cols=278 Identities=22% Similarity=0.297 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHH
Q ss_conf 653799999962689999999999999970898-9989999999999999999998863306612013712107056653
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH-ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLG 83 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~-~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g 83 (305)
...++.++++.||..+.+..+++.+|..++..+ .+.....+..++.+++|++||++||+.|+|+|++||||++||+|+|
T Consensus 10 ~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG 89 (289)
T COG0382 10 LKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSG 89 (289)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999999712499899999999999999864441799999999999999999999999961763067998667999878
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
Q ss_conf 04789899988887766899988634458999999988865444544310266560588887766422110132368856
Q gi|254780360|r 84 QISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVS 163 (305)
Q Consensus 84 ~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~ 163 (305)
++|++||+.++.++.+.++.+ .+..|+.+..++..+.+. ...| |++||.|+++|+..|.+.++++++||+|+.++..
T Consensus 90 ~vS~~~a~~~~~~~~~~~~~~-a~~l~~~~~~l~~~~~~l-~~~Y-~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~ 166 (289)
T COG0382 90 RVSVKEALLLAILLLLLGLAL-ALLLNPLAFLLSLAALVL-ALAY-PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLP 166 (289)
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 767999999999999999999-999709999999999999-9999-9852577315999999999999999999758533
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 63211147888899999999986535666641013351243388778997434568989987642102210899999999
Q gi|254780360|r 164 IASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFF 243 (305)
Q Consensus 164 ~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali 243 (305)
..++.++...++|+.++|+.|+++|+||||++|+||+|+.+|++++......+......+...++..+..+..|......
T Consensus 167 ~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (289)
T COG0382 167 LLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLV 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999987524319876972033885754489999999999999999999998719999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999504889978999998798999999999999986
Q gi|254780360|r 244 LGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 244 ~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
....+.+..... ++++.+.+++.|+.++..+.+.+.++.++.
T Consensus 247 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (289)
T COG0382 247 AALLLLYQILIV----DVRDPPACFALFDVNLLLGLLLFIGLILAV 288 (289)
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999997----342214579999983699999999999974
No 29
>KOG1381 consensus
Probab=100.00 E-value=0 Score=347.50 Aligned_cols=279 Identities=21% Similarity=0.196 Sum_probs=237.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHH
Q ss_conf 5379999996---268999999999999997089---8998999999999999999999886330661201371210705
Q gi|254780360|r 6 FRLNFFIVLL---KPRVMSLAIYTAFVGIVLAPG---HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRP 79 (305)
Q Consensus 6 ~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~~---~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RP 79 (305)
.|+|+|.||+ ||.+++++.++|-|+..++.+ .++...+.++-.|.+++|+|||+|||.+|||+|++++|||.||
T Consensus 62 ~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRP 141 (353)
T KOG1381 62 KRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRP 141 (353)
T ss_pred CCCHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHCCCC
T ss_conf 22325999971478761035432017788860698765026899985500877106885402655314666676532353
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCC
Q ss_conf 66530478989998888776689998863445899999998886544454431026656058888776642211013236
Q gi|254780360|r 80 IPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVT 159 (305)
Q Consensus 80 l~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~ 159 (305)
|++|++|+++|..+-.+....|+.++ .++|+.+..++..++.. ++.| |.+||+|+|||+++|++.+.+.+.||.|..
T Consensus 142 lAsG~ls~~qaI~fL~~ql~~gLgiL-lqLn~ysi~lg~~sl~~-v~~y-pl~kr~TY~pq~vLgltfnwGAllGw~A~~ 218 (353)
T KOG1381 142 LASGSLSPRQAIGFLGAQLSLGLGIL-LQLNWYSIALGASSLAL-VITY-PLMKRFTYWPQLVLGLTFNWGALLGWCALK 218 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHCCCCCCC-EEEE-EHHHHCCHHHHHHHHHHCCHHHHHCCHHHC
T ss_conf 33587565577899999998767999-72668889852245240-7774-122202320788976221335452646442
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 88566-32111478888999999999865356666410133512433887789974345689899876421022108999
Q gi|254780360|r 160 GDVSI-ASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYG 238 (305)
Q Consensus 160 ~~~~~-~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yl 238 (305)
|+..+ .+..|+....+||+.||++|||||++||.|+|+||++..+|+++ |.........++.......+....+..|.
T Consensus 219 g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nT-K~wl~gf~a~~ia~La~aG~~s~q~~pyy 297 (353)
T KOG1381 219 GSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNT-KPWLSGFGAAQIASLAAAGIASDQTWPYY 297 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 76470242689984132332123466503414536742146554407787-16776403989999987443058885178
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999504889978999998798999999999999986608
Q gi|254780360|r 239 IIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLID 292 (305)
Q Consensus 239 i~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i~ 292 (305)
+.....+ +....++...+-+|++.|+|-|+.|.+.+.+++.++++|.++.
T Consensus 298 ~~lg~~~----~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~~i~~d~llk 347 (353)
T KOG1381 298 AALGAVA----ARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFSGIVLDTLLK 347 (353)
T ss_pred HHHHHHH----HHHHHHEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 8899999----9987640344468818899998865762488989999999998
No 30
>PRK13594 consensus
Probab=100.00 E-value=0 Score=298.52 Aligned_cols=266 Identities=18% Similarity=0.238 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCC
Q ss_conf 37999999626899999999999999708989989999999999999999998863306612013712107056653047
Q gi|254780360|r 7 RLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQIS 86 (305)
Q Consensus 7 k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is 86 (305)
.+|+|+||+||++..+..++++.|+++|.+..+....+. ...+++.+++|+++||++|+|+|+.|+ |+||+|+|++|
T Consensus 2 sl~ay~~L~Rp~n~~~a~~~~~~g~~lA~~~~~~~~~l~-~~~v~~~~a~g~~iND~~D~eiD~iN~--P~RPipsg~is 78 (278)
T PRK13594 2 SVAAYLSIIRPVNAVVAGLAAIIAYLIATGTLPAESLLL-FCIVLLITGAGNVINDYFDKEIDAINR--PDRPIPSGQIS 78 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCC
T ss_conf 789999994498899999999999999758886588999-999999999999999787860453459--99988888629
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHEEECCCCCCCCC
Q ss_conf 8989998888776689998863445899999998886544454431026656-058888776642211013236885663
Q gi|254780360|r 87 PWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQ-NIVIGGIAGAIPPMIGWASVTGDVSIA 165 (305)
Q Consensus 87 ~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~-~~~~~~i~ga~~~l~g~~a~~~~~~~~ 165 (305)
+++|..++..+...|..+. ...++.+..+.....+. .++|++.+||.... |..++. ..+.+++.|..++.++-...
T Consensus 79 ~~~Al~~~~~l~~~g~~~~-~~~~~~~~~i~l~~~~l-l~~Ys~~LK~~~liGNi~Va~-l~g~~~~fg~~~~~~~~~~~ 155 (278)
T PRK13594 79 PGGALAYAILLFLIGNAIA-ILTTPLCLGIALVNSVI-LILYAARLKKTPFLGNISVAY-LAASIFLFGGAIAGTEGLLS 155 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHCCCCHHH
T ss_conf 9999999999999999999-99809999999999999-999999997567268899999-98899999999974564189
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21114788889999999998653566664101335124338877899743456898998764210221089999999999
Q gi|254780360|r 166 SLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLG 245 (305)
Q Consensus 166 ~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali~~ 245 (305)
.+.++...|+|+.++++...++|.|+|++.|++|+|+++|+|+|++.+..+....+..|.+|+.. .|..|+....+.+
T Consensus 156 ~~~l~~~aFl~~l~REIvKDieDieGD~~~g~~TLPi~~G~kka~~~a~~~~~~~~~~s~lPy~~--~g~~Yl~~i~~~~ 233 (278)
T PRK13594 156 MLPIAAITFLAMLARELLKDAEDIEGDRAHGARTLPMLIGVRKTIYLAFICATFAVLASLLPYLW--WGAFYLAGIAVVD 233 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_conf 99999999999999999945530123887799740779718989999999999999999889998--7499999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHH
Q ss_conf 9999999999950488997--8999998798999999
Q gi|254780360|r 246 YHFTLWAWRTFLCKEDKDI--RVTKKLFLESITYLFV 280 (305)
Q Consensus 246 ~~~l~~a~~~~~~~~~~~~--k~a~klF~~S~~yl~i 280 (305)
..+++.+++..+.+++++. +++++..|.+..-+.+
T Consensus 234 ~~~l~~~~~~l~~~~~~~~~a~~~~~~lk~~m~~~l~ 270 (278)
T PRK13594 234 AVILFGAIRGLKCTTSEELIASNSTTILKAGMFASLL 270 (278)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999850793277888888999999999999
No 31
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=9e-37 Score=237.22 Aligned_cols=247 Identities=18% Similarity=0.170 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHH----HHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCH
Q ss_conf 6537999999626899999999999999708989--9899----999999999999999988633066120137121070
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHI--SVLK----SVISIFAIAMGAGASGALNMYYDADIDKMMARTASR 78 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~--~~~~----~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 78 (305)
..+.|..+||+||..|+-..|...||.+ ++|.. +..+ +.-.++++-++|+.+|++||++|||+|++|| ++|
T Consensus 18 ~~~~~~~l~l~kPvTW~p~~w~~~CG~~-ssG~~~w~~~~~~~~~~g~~l~GPl~~g~sq~iNDy~DreiDaINe--P~R 94 (308)
T PRK07566 18 TSIPSARLQLMKPITWFPPMWAFLCGAV-SSGAFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINE--PYR 94 (308)
T ss_pred CCCHHHHHHHCCCCCCCCCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC--CCC
T ss_conf 7463788662589745660899864153-0688877566799999999975078744002898888753012458--898
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHHHHHHH-HHHHHHHE
Q ss_conf 5665304789899988887766899988634458999999988865444544---3102665605888877-66422110
Q gi|254780360|r 79 PIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIVIGGIA-GAIPPMIG 154 (305)
Q Consensus 79 Pl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~~~~i~-ga~~~l~g 154 (305)
|||||++|.++|+.++..++..|+.+. +.+++..+.+.+.+.+. .++|+- .+||..++.....|++ .++|...|
T Consensus 95 PIPSG~is~~~a~~~~~~l~~l~~~~a-~~L~p~~~~~~~~gl~l-a~~YSapPlRLK~~gw~Gn~~vg~sY~~lpw~~G 172 (308)
T PRK07566 95 PIPSGAISLRWVLIQIAVLLVLGLAVA-YLLGPWVFLAALVGLFL-AWIYSAPPIRLKQNGWLGNYAVGLSYEGLPWWAG 172 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 887678789999999999999999999-99867999999999999-9996377788533666401999999999999988
Q ss_pred EECCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1323688-566321114788889999999998653566664101335124338877899743456898998764210221
Q gi|254780360|r 155 WASVTGD-VSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFA 233 (305)
Q Consensus 155 ~~a~~~~-~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~ 233 (305)
.++.++. .+.+.+.+.....+++.+-.+..-.+|.|+|||.|++|+|+.+|+|++.+.... .+....+....++....
T Consensus 173 ~a~~~~~~p~~~i~~lAllysl~a~GImtlnDfKdiEGDr~~GlrSLPV~~G~~~Aa~iA~~-~m~~~Q~~v~~~l~~~g 251 (308)
T PRK07566 173 AAAFGAGQPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACV-VIDIFQLAVIAYLLAWG 251 (308)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCHHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_conf 99855778850799999999999999999963221355275298772724147889999999-99899999999999975
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 089999999999999999999995
Q gi|254780360|r 234 SVTYGIIVFFLGYHFTLWAWRTFL 257 (305)
Q Consensus 234 g~~yli~ali~~~~~l~~a~~~~~ 257 (305)
...|..+...+-+..+....+.++
T Consensus 252 ~~~~a~~v~~ll~~Q~~~~~~ll~ 275 (308)
T PRK07566 252 QPLYAAIVALLLIPQITLQDILLR 275 (308)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 479999999999999999999986
No 32
>pfam01040 UbiA UbiA prenyltransferase family.
Probab=100.00 E-value=1e-34 Score=225.08 Aligned_cols=231 Identities=22% Similarity=0.321 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999999997089-89989999999999999999998863306612013712107056653047898999888877668
Q gi|254780360|r 23 AIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSS 101 (305)
Q Consensus 23 ~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~ 101 (305)
...+++.|..++.+ ..+........++..+.++++|++||+.|+|+|++|+||++||+|+|++|++++..++..+...+
T Consensus 4 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~Rpl~~g~is~~~~~~~~~~~~~~~ 83 (258)
T pfam01040 4 ALLPVLAGLALAAGGALDLLLLLLLLLALLLLQAAGNVLNDYFDREIDADNPNKPSRPLPSGRISPREALLLALALLLLG 83 (258)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999857999999999999999999999999984851841866777888877899977999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99988634458999999988865444544-31026656058888776642211013236885663211147888899999
Q gi|254780360|r 102 IVIMGLAINWVSATLLFMSIFCYVVIYTI-WLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPH 180 (305)
Q Consensus 102 ~~~l~~~~n~~~~~l~~~~~~~y~~iYtp-~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~ 180 (305)
..+. ...|+.+..+.....+.. +.||. .+||++.+++++++++++++++.||.+++++.+.+++.+....++|+..+
T Consensus 84 ~~~~-~~~~~~~~~~~~~~~~~~-~~Ys~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (258)
T pfam01040 84 LLLA-LLLGPLLLLLGLLGLLLG-LLYSLPRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPLFLLGLAI 161 (258)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999-999999999999999999-99944641346876621022398899999999980888699999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998653566664101335124338877899743456898998764210221089999999999999999999995
Q gi|254780360|r 181 FWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFL 257 (305)
Q Consensus 181 ~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~ali~~~~~l~~a~~~~~ 257 (305)
.....++|+|+|++.|.+|+|+..|++.................. ...... +..+...........+.......+
T Consensus 162 ~~~~~~~D~e~D~~~g~~tl~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 236 (258)
T pfam01040 162 LLANDIRDVEGDRKAGRRTLPVRLGEKRALALLALLLAAALLLLA-LLLLLL-APLLLLLAVLLAALALLRALRLLR 236 (258)
T ss_pred HHHHHCCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999970357879987998516347777699999999999999999-999998-789999999999999999999972
No 33
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase; InterPro: IPR006372 These are a subfamily of a large family of polyprenyltransferases that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.; GO: 0030494 bacteriochlorophyll biosynthetic process.
Probab=100.00 E-value=4.2e-32 Score=209.54 Aligned_cols=242 Identities=21% Similarity=0.273 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---CC-----CCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHH
Q ss_conf 999999626899999999999999708---98-----99899999-9999999999999886330661201371210705
Q gi|254780360|r 9 NFFIVLLKPRVMSLAIYTAFVGIVLAP---GH-----ISVLKSVI-SIFAIAMGAGASGALNMYYDADIDKMMARTASRP 79 (305)
Q Consensus 9 ~~y~~L~kp~~~~~~~~~~~~g~~la~---~~-----~~~~~~~~-~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RP 79 (305)
|.-+||+||-.|+-..+.++||-+-++ ++ .++.++++ .++++-++||-++++||++|||+|+.|| |+||
T Consensus 1 ~~~l~L~~PvTW~~p~w~~~CGA~asG~~~g~dWtr~e~~~~~LlGmllaGPL~tG~sQ~~Ndy~DR~vDAiNe--P~Rp 78 (295)
T TIGR01476 1 RARLELMKPVTWIPPIWAVLCGAVASGALRGSDWTRVEKWLLLLLGMLLAGPLLTGLSQSVNDYFDRDVDAINE--PQRP 78 (295)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCC
T ss_conf 96200268733343699998666660333687655523489999999875145410377764331565466377--3558
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH---HHHHCCCCCCHHHHHHH-HHH
Q ss_conf 665304789899988887766899988634458------99999998886544454---43102665605888877-664
Q gi|254780360|r 80 IPLGQISPWEAWVLGVSLAVSSIVIMGLAINWV------SATLLFMSIFCYVVIYT---IWLKRFTPQNIVIGGIA-GAI 149 (305)
Q Consensus 80 l~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~------~~~l~~~~~~~y~~iYt---p~lKR~t~~~~~~~~i~-ga~ 149 (305)
||||+||.+++....+++..+|..+.+.+.++. -..+.+.+++. .++|| ..+||..|+..-..|++ -++
T Consensus 79 IPsG~iS~~~~~~~~~vL~~~~~~va~~LG~~~qhdfPi~~~~~~~G~~~-A~~YS~~PikLK~~GWlG~~~vg~sY~~L 157 (295)
T TIGR01476 79 IPSGAISLREVLILILVLTVAGLAVALVLGNWLQHDFPIIVLFTVVGVVL-ALIYSLPPIKLKRNGWLGPALVGLSYEGL 157 (295)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98860067899999999999999999872664333226999999999999-99970463012435560078999997456
Q ss_pred HHHHEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2211013236-885663211147888899999999986535666641013351243388778997434568989987642
Q gi|254780360|r 150 PPMIGWASVT-GDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPT 228 (305)
Q Consensus 150 ~~l~g~~a~~-~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~ 228 (305)
|-..|.+..+ |.++++.....++.-+=-.+--+.=-.+-.|.|||.|+||+||.+|.+.+++.... ++......+..+
T Consensus 158 ~W~AGha~fa~GaL~~~~vvvALlys~~A~Gi~~lNDfKSveGDr~lGl~SLpV~~G~~~aa~~~~~-~~~~~q~~v~~l 236 (295)
T TIGR01476 158 PWMAGHAVFAPGALTFEIVVVALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMLGVKVAAKLAVT-TIDVFQILVIGL 236 (295)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 7899999860379851558898899887616677732452015113463201103124667899998-999999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10221089999999999999999999
Q gi|254780360|r 229 MLGFASVTYGIIVFFLGYHFTLWAWR 254 (305)
Q Consensus 229 ~~~~~g~~yli~ali~~~~~l~~a~~ 254 (305)
........+..+..++-+.-++...+
T Consensus 237 l~~wG~~~~A~~v~~lLvAq~~~~~~ 262 (295)
T TIGR01476 237 LLIWGQPLVATIVLLLLVAQIIAQAK 262 (295)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99832378999999998433664248
No 34
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.97 E-value=5.8e-30 Score=196.85 Aligned_cols=205 Identities=17% Similarity=0.199 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CC---HHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHH
Q ss_conf 653799999962689999999999999970898-99---899-9999999999999999886330661201371210705
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH-IS---VLK-SVISIFAIAMGAGASGALNMYYDADIDKMMARTASRP 79 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~-~~---~~~-~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RP 79 (305)
..|+|..+||+||..|.-+.+...||..-+.+. .. ... +...++.+-++++.++++||++|||+|++|| ++||
T Consensus 9 t~k~k~~LqLlKPVTWiPpmWa~~CGavsSG~~~~~~~~~l~~l~~mlLaGPL~~G~SQtiNDwyDReVDAINE--P~RP 86 (331)
T PRK12392 9 VDKIRAHLELLDPVTWISVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNE--PTRP 86 (331)
T ss_pred CHHHHHHEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHCCCCCCC--CCCC
T ss_conf 04266410203885436736977532430378787545799999999982626525157877776521211269--9999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHHHHHHH-HH
Q ss_conf 665304789899988887766899988634-------458999999988865444544---3102665605888877-66
Q gi|254780360|r 80 IPLGQISPWEAWVLGVSLAVSSIVIMGLAI-------NWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIVIGGIA-GA 148 (305)
Q Consensus 80 l~~g~is~~~a~~~~~~l~~~~~~~l~~~~-------n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~~~~i~-ga 148 (305)
|||||||.+++.....+++..+..+..... ++......+.+.+. .++|+- .+||..++.....|++ .+
T Consensus 87 IPSGrIs~~~~l~~~~i~~lla~~l~~~lg~~~~~~~~~~i~~a~l~Gl~~-A~iYSAPPlrLK~nGW~Gn~avG~SY~~ 165 (331)
T PRK12392 87 IPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFV-AYIYSAPPLKLKKNILTSAPAVGFSYGF 165 (331)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHCCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999877478799999999999999999972254033206999999999999-9987188055443355453999999878
Q ss_pred HHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 42211013236885663211147888899999999986535666641013351243388778997
Q gi|254780360|r 149 IPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHI 213 (305)
Q Consensus 149 ~~~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i 213 (305)
+|-..|- |+-++..++...+..+..+=-.+--+.=-.+..|.||+.|+||+|+.+|.|+++...
T Consensus 166 LpW~tG~-Alf~~l~p~iv~lAlLYslga~GImtlNDFKSvEGDr~~Gl~SLPV~~G~~~A~wI~ 229 (331)
T PRK12392 166 ITFLSAN-ALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVS 229 (331)
T ss_pred HHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEECCCCHHHHH
T ss_conf 9999999-986568829999999999886266432033223461652944326454354217777
No 35
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.96 E-value=3.5e-26 Score=174.41 Aligned_cols=282 Identities=18% Similarity=0.168 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHCCCHHHHCHH
Q ss_conf 3653799999962689999999999999970--89899899999999999999999988633066--1201371210705
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLA--PGHISVLKSVISIFAIAMGAGASGALNMYYDA--DIDKMMARTASRP 79 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la--~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~--~iD~~~~RT~~RP 79 (305)
+|+++|.+++.+||+.-...+.+.+.|..+| .+..++...++.+++..+...+++.+|||.|- ..|+.+.++++|+
T Consensus 5 ~~~~lk~w~~a~Rp~tl~~s~~pvllG~alA~~~g~f~~~~~~l~ll~~~~~q~~~N~~NDY~D~~~G~D~~~~~g~~r~ 84 (300)
T PRK06080 5 QMSTFQAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALIAALLLQIAVNLANDYGDYVKGTDTEDRVGPLRA 84 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 56579999999727889999999999999999869836999999999999999999998868788647774314688424
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHHHHHHH-HHHHHH
Q ss_conf 6653047898999888877668999---88634458999999988865444544---3102665605888877-664221
Q gi|254780360|r 80 IPLGQISPWEAWVLGVSLAVSSIVI---MGLAINWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIVIGGIA-GAIPPM 152 (305)
Q Consensus 80 l~~g~is~~~a~~~~~~l~~~~~~~---l~~~~n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~~~~i~-ga~~~l 152 (305)
+++|++|+++....+..+..++... +....++....++..++.. .+.||- .+||.. +..+..++. |-++++
T Consensus 85 i~~g~is~~~~~~~~~~~~~~a~~~G~~l~~~~g~~~l~lg~~~~~~-~~~Yt~gP~~l~y~g-LGei~v~~~~G~l~v~ 162 (300)
T PRK06080 85 IGRGLISPKQVKRAAIAFFGLAALLGLLLALASGWWLLLVGLLCIAA-AILYTGGPKPYGYTG-LGELFVFVFFGLVAVL 162 (300)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf 51589689999999999999999999999999657999999999999-999727986344566-4217899995079999
Q ss_pred HEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10132368856632111478888999999999865356666410133512433887789974345689899876421022
Q gi|254780360|r 153 IGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGF 232 (305)
Q Consensus 153 ~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~ 232 (305)
..+...+++++..+++......+++...-.+=.++|+|.||++|-+++|+..|+|+++....................+.
T Consensus 163 g~~y~qt~~~~~~~~l~s~p~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~k~a~~l~~~l~~~~yl~~~~~~~~~~ 242 (300)
T PRK06080 163 GTYYLQAGTVDSAVFLPAVPCGLLAGAVLLANNIRDIETDRENGKNTLAVRLGDVNARRLHAILLALAYLCIILLALLGL 242 (300)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999936867999999989999898999984642017799869931673466177999999999999999999999875
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10899999999999999999999950488997-8-999998798999999999999986
Q gi|254780360|r 233 ASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDI-R-VTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 233 ~g~~yli~ali~~~~~l~~a~~~~~~~~~~~~-k-~a~klF~~S~~yl~ilfl~liid~ 289 (305)
... +.....+.+.+..+..+.....++++. . .-++.-+....++.++.+++++++
T Consensus 243 ~p~--~~ll~ll~lP~a~~~~~~~~~~~~~~~l~~~l~~ta~~~~~~~il~~igllLs~ 299 (300)
T PRK06080 243 ASP--WVLLFLLALPLAVKAARPVLRKQKPATLIPALKATGKTALLFGLLFAIGLLLSQ 299 (300)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 169--999999999999999999985588487999999999999999999999999822
No 36
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.96 E-value=4.7e-26 Score=173.69 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HH-HHHHHHHHHHHHHHHHHH----HHHHHCCCHHCCCHHHHC
Q ss_conf 65379999996268999999999999997089899--89-999999999999999998----863306612013712107
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHIS--VL-KSVISIFAIAMGAGASGA----LNMYYDADIDKMMARTAS 77 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~--~~-~~~~~~~~~~l~~~a~~~----~Nd~~D~~iD~~~~RT~~ 77 (305)
+.-+.++.+.+|||.+.+-..+....+++|.+..+ .. ..+-.++.+..++-.+++ +||++|+|+||.|| |+
T Consensus 11 ~~~l~a~~~FsRPhTiiGT~l~v~~~~l~a~~~~~~~~~~~~~~~~l~~~~a~l~~NiyiVGlNq~~D~eIDkINk--P~ 88 (309)
T PRK12887 11 MPWLYALWKFSRPHTIIGTSLSVLGLYLIAIAVSSNSFALTNLGLLLGAWVACLCGNVYIVGLNQLTDIEIDRINK--PH 88 (309)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHEEEHHHHHHHHHHHCCC--CC
T ss_conf 6689999987384799989999999999997516763338999999999999995132033101466554131268--89
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHH-HHH---HHHHH-
Q ss_conf 05665304789899988887766899988634458999999988865444544---31026656058-888---77664-
Q gi|254780360|r 78 RPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIV-IGG---IAGAI- 149 (305)
Q Consensus 78 RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~-~~~---i~ga~- 149 (305)
||+||||+|.++++.+....+..|+.+.... .+........+.++ ..+|+. .+||..++.-. +.+ +..++
T Consensus 89 lPIpSG~is~~~g~~iv~~~~~lsl~la~~l-g~~l~~~~~i~l~l-g~aYS~PpLRlKr~~~~aalcI~~vrg~iv~lg 166 (309)
T PRK12887 89 LPLAAGEFSRRQGQIIVIITGILALILAALL-GPWLLLTVGISLLI-GTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLG 166 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 9888777668889999999999999999997-07899999999999-999807846654332377788777677999889
Q ss_pred -HHHHEEECCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf -22110132368--85663211147888899999999986535666641013351243388778997
Q gi|254780360|r 150 -PPMIGWASVTG--DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHI 213 (305)
Q Consensus 150 -~~l~g~~a~~~--~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i 213 (305)
..-..+ +..+ ..+.+.+.+...+.+...+--+.--..|.|.||+.|++|+|++.|+|+..+..
T Consensus 167 ~~~~~~~-~~~~~~~~~~~i~~~t~f~~~fa~~Iai~KDipDIEGDr~~GI~Tl~V~LG~k~v~~l~ 232 (309)
T PRK12887 167 LFLHFQW-LLQGPVEIPPPVWVLTLFVLVFTFAIAIFKDIPDMEGDRQYNITTFTLRLGKQRVFKLS 232 (309)
T ss_pred HHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEECHHHHHHHHHHHH
T ss_conf 9999999-97577778837999999999999999998157423432751976543475389999999
No 37
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=7.6e-23 Score=154.66 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHH
Q ss_conf 537999999626899999999999999708989989---99999999999999999886330661201371210705665
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVL---KSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPL 82 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~ 82 (305)
..+|+|++++|||+|..+++ .+.+.+.+....+.. ..+...++..+++|+.+++||+.|+|-||++|++|+||+||
T Consensus 2 ~~~~~~~~~lRp~qWiKN~l-vf~p~~~~~~~~~~~~~~~~~~~F~~F~l~aS~vYi~NDi~D~~~Dr~Hp~Kk~RPiAS 80 (288)
T PRK12324 2 NLLAGYLKLLRPKQWIKNVF-VFAAPIFAGRLLNLEVLLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRFRPIAS 80 (288)
T ss_pred CHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
T ss_conf 36999999969899999999-99999980540478999999999999999999999998375475205683534685555
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCC
Q ss_conf 30478989998888776689998863445899999998886544454431026656058888776642211013236885
Q gi|254780360|r 83 GQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV 162 (305)
Q Consensus 83 g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~ 162 (305)
|++|.++|..++.++...++..+. ..|+....+...-++. ...||.++||.-.......+.-.-+-.+.|..+++ +
T Consensus 81 G~is~~~a~~~~~~l~~~~~~~~~-~~~~~~~~~l~~Y~~l-~~~YS~~LK~i~ilDv~~ia~gf~lRv~aG~~~~~--i 156 (288)
T PRK12324 81 GVVSVSLAYILAVVLLVASLILAY-LLSPKLALVLLVYLAL-NLAYSFKLKHQPVLDVFCIASGFVLRAIAGGVAIG--V 156 (288)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_conf 674688999999999999999999-7579999999999999-99999998659999999999899999998798817--9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 663211147888899999999986535666
Q gi|254780360|r 163 SIASLVMFLIIFLWTPPHFWSLALLCKDDY 192 (305)
Q Consensus 163 ~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd 192 (305)
+...|++....++ +..+|...|.++
T Consensus 157 ~~S~Wll~~~~~~-----~l~la~~KR~~E 181 (288)
T PRK12324 157 PLSPWLLLCTALL-----SLFLAAGKRYAE 181 (288)
T ss_pred CCCHHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf 9889999999999-----999999899999
No 38
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.92 E-value=8.1e-22 Score=148.54 Aligned_cols=280 Identities=16% Similarity=0.199 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHCCCHHHHCHHH
Q ss_conf 53799999962689999999999999970---8989989999999999999999998863306--612013712107056
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLA---PGHISVLKSVISIFAIAMGAGASGALNMYYD--ADIDKMMARTASRPI 80 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la---~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D--~~iD~~~~RT~~RPl 80 (305)
.++|.++|.+||+.....+.|.+.|..+| .+..++...++.+++..+...+++.+|||.| +..|+.+.+.++|++
T Consensus 1 Msl~~w~~~~Rp~tl~asv~PvllG~a~a~~~~~~f~~~~~ll~ll~~~~~qi~~N~~NDY~D~~~G~D~~~~~g~~~~i 80 (317)
T PRK13387 1 MSAKLFLKLVEIHTKIASFFPVILGTLFSLYYVAKIDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGI 80 (317)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 97899999876777899999999999999996698779999999999999999998766255650377875445888600
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCHHHHHHHHH-HHHH
Q ss_conf 653047898999888877668999---8863445899999998886544454----4310266560588887766-4221
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVI---MGLAINWVSATLLFMSIFCYVVIYT----IWLKRFTPQNIVIGGIAGA-IPPM 152 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~---l~~~~n~~~~~l~~~~~~~y~~iYt----p~lKR~t~~~~~~~~i~ga-~~~l 152 (305)
.+|.+|+++....+..+...+... +.+..++....++..++.. .+.|| | ++ +.++.-+..+++.+ ..++
T Consensus 81 ~~g~ls~~~v~~~~~~~~~~a~i~Gl~L~~~tg~~~l~iG~~~~~~-~~~YT~gP~p-l~-y~glGEi~v~~~~G~~~v~ 157 (317)
T PRK13387 81 GQHGLKPKNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAI-GILYTGGPLP-LS-RMPLGEIFSGLTMGFGIFL 157 (317)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCC-CC-CCCCHHHHHHHHHHHHHHH
T ss_conf 5799799999999999999999999999998437999999999999-7643279966-47-7672279999998899988
Q ss_pred HEEECCCCCCCCCCCCHHHHHHHHH-------------HHH-HH------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 1013236885663211147888899-------------999-99------998653566664101335124338877899
Q gi|254780360|r 153 IGWASVTGDVSIASLVMFLIIFLWT-------------PPH-FW------SLALLCKDDYQKASIPMLPNVVTDRTTKMH 212 (305)
Q Consensus 153 ~g~~a~~~~~~~~~~~l~~~~~~W~-------------~~~-~~------~~a~~d~~dd~k~Gikslpv~~G~k~t~~~ 212 (305)
..+...+++.+..++......+.+| .|- .. +=.+.|.|+|+|+|-+++|+..|+|++++.
T Consensus 158 ~~~yv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~slp~~ll~~~IL~~NN~rD~e~D~~~gk~TL~v~lG~~~a~~~ 237 (317)
T PRK13387 158 LAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVL 237 (317)
T ss_pred HHHHEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEEECHHHHHHH
T ss_conf 87413304454023311232000110036689999998889999999998565751366997698017989885779999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 743456898998764210221089999999999999999999995048899--7899-9998798999999999999986
Q gi|254780360|r 213 ILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKD--IRVT-KKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 213 i~~ysi~~~llsll~~~~~~~g~~yli~ali~~~~~l~~a~~~~~~~~~~~--~k~a-~klF~~S~~yl~ilfl~liid~ 289 (305)
-...........+.....+...+.. ....+.....++..+....+.++. ...+ ++.-+.+..++.++.+++++++
T Consensus 238 y~~l~~~ayl~ii~~v~~g~~p~~~--ll~ll~~P~~~k~~~~~~~~~~k~~~~~~~~k~t~~~~~~~gll~~~g~ll~~ 315 (317)
T PRK13387 238 FAVLFYASYLAIAVIVLMGYISPWA--LVSFLTLRKPISNIQSFQKEAKDPKYFRIAIKNTVLTNTTFGFLLSASLLIQY 315 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999985523999--99999999999999999856999068999999999999999999999999986
Q ss_pred H
Q ss_conf 6
Q gi|254780360|r 290 L 290 (305)
Q Consensus 290 ~ 290 (305)
+
T Consensus 316 l 316 (317)
T PRK13387 316 L 316 (317)
T ss_pred H
T ss_conf 2
No 39
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=1.3e-21 Score=147.27 Aligned_cols=279 Identities=16% Similarity=0.153 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHH-H--CH
Q ss_conf 653799999962689999999999999970---89899899999999999999999988633066120137121-0--70
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLA---PGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMART-A--SR 78 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la---~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT-~--~R 78 (305)
++|.|.|+.-+||+--.....|...|..+| .|.+++...+..+++..+...+++..|||.|-+.+...+++ . .|
T Consensus 1 ~~~~k~~~~a~RP~tl~asi~pv~lG~a~A~~~~g~f~~~~~ll~ll~~~l~q~~~Nl~NDY~D~~~G~D~~~~~~~~~~ 80 (296)
T PRK05951 1 ITRDKEFFIQTRPWSFVMTIISTSFGYSYGFYLIGSFDPLLSWAILLGCVLLHASANVLNDYFDYVLGIDTRETTGYRPH 80 (296)
T ss_pred CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 95088999996703769999999999999999769875999999999999999999985618888457756766788853
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHCCCCCCHHHHHHH-HHHHH
Q ss_conf 56653047898999888877668999---8863445899999998886544454--43-102665605888877-66422
Q gi|254780360|r 79 PIPLGQISPWEAWVLGVSLAVSSIVI---MGLAINWVSATLLFMSIFCYVVIYT--IW-LKRFTPQNIVIGGIA-GAIPP 151 (305)
Q Consensus 79 Pl~~g~is~~~a~~~~~~l~~~~~~~---l~~~~n~~~~~l~~~~~~~y~~iYt--p~-lKR~t~~~~~~~~i~-ga~~~ 151 (305)
++.+|.+|+++....+..+...+... +....++....++..+++. .+.|| |+ +|+. ++..+..+++ |-+++
T Consensus 81 ~i~~g~ls~~~v~~~~~~~~~~a~~~G~~L~~~~~~~~l~lg~~g~~~-~~~YTggP~~l~y~-gLGel~v~i~fG~l~v 158 (296)
T PRK05951 81 PIIAGIMSLGNVRVLGIALGCIALQLGGALFLDRRPLAVLLALLGVFL-LYCYMGPPFNLKYR-ALGELLVFIAWGHLMV 158 (296)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCC-CCCHHHHHHHHHHHHH
T ss_conf 688379789999999999999999999999998559999999999999-99981799766566-6107999999899999
Q ss_pred HHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 11013236885663211147888899999999986535666641013351243388778997434568989987642102
Q gi|254780360|r 152 MIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLG 231 (305)
Q Consensus 152 l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~ 231 (305)
+..+...+++++..+++.....-+++..--.+=-.+|+|+||++|-+++|+..|+|+++..-.................+
T Consensus 159 ~g~~y~qtg~~~~~~~l~s~p~gll~~~IL~~Nn~rD~e~D~~~Gk~Tl~v~lG~~~a~~~~~~l~~~~y~~~~~~~~~~ 238 (296)
T PRK05951 159 LGLIYVWTGNISSPNVLAGVPLGLLVAAVLLANNLRDIEDDERLGAPTLAVIFGRKSAVALYAFALLSPYLILVILVIAI 238 (296)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999991877699999999999999999998786221549976997648786757599999999999999999999986
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 21089999999999999999999995048--8997899999879899999999999998660
Q gi|254780360|r 232 FASVTYGIIVFFLGYHFTLWAWRTFLCKE--DKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 (305)
Q Consensus 232 ~~g~~yli~ali~~~~~l~~a~~~~~~~~--~~~~k~a~klF~~S~~yl~ilfl~liid~~i 291 (305)
......+. ...++...+...+..+.+. +.+.+.++..+. ++.+..++++++++.
T Consensus 239 ~~p~~~ll--~lltlPla~~l~~~~~~~~~~~~~~~T~~l~~~----fg~l~~~g~lls~l~ 294 (296)
T PRK05951 239 LLPLISLW--ALLTLPVAYALCLWQSRKFPHDADPATAQIFMV----FGYLYILGTLLSKLV 294 (296)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_conf 60599999--999999999999999752545553899999999----999999999999872
No 40
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=5.1e-22 Score=149.73 Aligned_cols=213 Identities=13% Similarity=0.102 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_conf 999999999999999886330661201371210705665304789899988887766899988634458999---99998
Q gi|254780360|r 44 VISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSAT---LLFMS 120 (305)
Q Consensus 44 ~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~---l~~~~ 120 (305)
....+.+++...+|+++||+.|.|+|+.|+ |+|+...+++|++.+..+...+... ..+.+...+..... .....
T Consensus 49 ~llvl~~~l~~aagYiIN~~~D~e~D~IN~--P~r~~~~~~is~~~~~~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~ 125 (297)
T PRK12872 49 PLLLLITFLLALSVYSINYLTDLDEDRINN--PERVEFLKKIGEKLAYNFFFLAVLG-VYLGAYLSSVIMRPAFASIFIL 125 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHCCC--CCCHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999998725640220311341479--8623310100399999999999999-9999999999998999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 886544454431026656058888776642-2110132368856632111478888999999999865356666410133
Q gi|254780360|r 121 IFCYVVIYTIWLKRFTPQNIVIGGIAGAIP-PMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPM 199 (305)
Q Consensus 121 ~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~-~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Giks 199 (305)
...+.+.|+..+||......+..|+..+.+ +..+-.....+.+...+..+...|+=....+...-++|.|.|++.|+++
T Consensus 126 ~~~~~~~Ys~~LK~ip~~gNl~va~l~a~~~~~~~i~~~~~~~~~~i~~~a~F~fl~~lireivkDi~di~GD~~~g~~T 205 (297)
T PRK12872 126 GIIYLYLYKRRLKQIPLFKNLLVALVWGLSITILPVLYGGLATDSALLLVAAFAFLKNFVNTIVFDIKDIEGDRNSGLKT 205 (297)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCE
T ss_conf 99999998999863510889999999999999999999934300899999999999999999971575131548669831
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 512433887789974345689899876421022108-99999999999999999999950488
Q gi|254780360|r 200 LPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASV-TYGIIVFFLGYHFTLWAWRTFLCKED 261 (305)
Q Consensus 200 lpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~-~yli~ali~~~~~l~~a~~~~~~~~~ 261 (305)
+|+.+|+|+|++.+....+............+..+. .|.... ....+.+...+.++.+++
T Consensus 206 lPi~~G~~~tk~ii~~l~~~~~~~~~~l~~~~~~~~~~y~~~~--~~~~l~~~~i~l~~a~~~ 266 (297)
T PRK12872 206 LPIILGKRRTLRFLTILNLLPLALLVLGVYTGVFPTGLYLLLF--PLSAYVFFYIKITKADRK 266 (297)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCH
T ss_conf 4835235889999999999999999999999887699999999--999999999999982766
No 41
>PRK08238 hypothetical protein; Validated
Probab=99.91 E-value=1e-21 Score=147.89 Aligned_cols=172 Identities=19% Similarity=0.245 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHH
Q ss_conf 6537999999626899999999999999708989989---9999999999999999988633066120137121070566
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVL---KSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIP 81 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~ 81 (305)
-.++|.|++.+|||+|..+++ .+...+.+....++. ..++.+++..+++|+.+++||+.|+|-||.+||+|+||++
T Consensus 190 ~~~~~~~lk~lRphQW~KNll-vF~Pl~~a~~~~~~~~~~~~~~aF~~Fsl~ASsvYi~NDl~D~e~DR~Hp~Kr~RP~A 268 (481)
T PRK08238 190 PPSLRTWLKALRVHQWLKNLL-VFVPLLAAHDFGDLQAVLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFA 268 (481)
T ss_pred CCCHHHHHHHHCHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 867999999869899988689-9999987242058999999999999999999698988608678754168624569777
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCC
Q ss_conf 53047898999888877668999886344589999999888654445443102665605888877664221101323688
Q gi|254780360|r 82 LGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGD 161 (305)
Q Consensus 82 ~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~ 161 (305)
||++|.++|...+.++...|+.+. +..|+....+...-+++ ...||..+||.-....++.+.-..+-.+.|.+|. +
T Consensus 269 SG~ls~~~~~~~~~~ll~~~~~~a-~~~~~~f~~~l~~Y~~l-t~~YS~~LK~i~iiDv~~la~~f~lRiiaG~~a~--~ 344 (481)
T PRK08238 269 SGALPIPFGLAAAPVLLLAALALA-LALSPAFLLVLLAYLVL-TLAYSLRLKRKALIDVLTLAGLYTLRIIAGAVAV--G 344 (481)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_conf 788898899999999999999999-99679999999999999-9999999754267589999989999998526230--7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5663211147888899999999986
Q gi|254780360|r 162 VSIASLVMFLIIFLWTPPHFWSLAL 186 (305)
Q Consensus 162 ~~~~~~~l~~~~~~W~~~~~~~~a~ 186 (305)
+...+|++...+|+ |..+|.
T Consensus 345 i~~S~WLl~fs~f~-----fl~La~ 364 (481)
T PRK08238 345 VALSFWLLAFSMFF-----FLSLAL 364 (481)
T ss_pred CCCCHHHHHHHHHH-----HHHHHH
T ss_conf 78749999999999-----999999
No 42
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.89 E-value=2.6e-21 Score=145.55 Aligned_cols=273 Identities=16% Similarity=0.155 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHH---
Q ss_conf 36537999999626899999999999999708989989999999999999999998863306612013712107056---
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPI--- 80 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl--- 80 (305)
++..+|..+..+||..|.-...+..+|++++++..+......++.-.+=.--.=+-+||++|+|.|.+|||+..|+=
T Consensus 5 ~~~~l~~l~~~SRP~~Winta~p~~~g~~l~~~~~~~~~~~~~i~flvP~Nl~mYGINDvfD~esD~~NPRKgg~Ega~l 84 (291)
T PRK13105 5 MMELIRQILLSSRPLSWVNTAYPFAAAYLLTAGEIDWLFWLGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGAVL 84 (291)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88999999984687311032268999999972545589999999999878888734203332131023888788663014
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHEEEC
Q ss_conf 65304789899988887766899988634458999999988865444544---310266560588887766422110132
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIVIGGIAGAIPPMIGWAS 157 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~~~~i~ga~~~l~g~~a 157 (305)
+.++. +....-..++.+.-+..+....++.+........+. .+.|+- ..|.+..+.-+-.+.-...|.+.|.+.
T Consensus 85 ~~~~~--r~~l~~~~~~~~pfl~~l~~~~~~~~~~~l~~~~f~-~vaYSaPpLRFKe~P~LDS~ss~~~~v~pa~~~~~l 161 (291)
T PRK13105 85 PKASH--RPLLWASAITTIPFLVVLVIAGTWMSWAVLAVSVFA-VIAYSAAGLRFKERPFLDALTSSTHFTSPALYGLTL 161 (291)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 70015--503599999866899999981778899999999999-850258860346665532112211564489999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHH
Q ss_conf 3688566321114788889999999998653566664101335124338877899743-456898998764210221089
Q gi|254780360|r 158 VTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILI-YTVLTSIVGVLPTMLGFASVT 236 (305)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~-ysi~~~llsll~~~~~~~g~~ 236 (305)
.+.+.+++.|......++|.++--.--|+||.|.||++|+.|.++..|.|.|.+.... |..+...+.. .+. +.
T Consensus 162 ~g~~~~~~~~~~~~a~~lW~masHaF~AvqDI~~DR~aGI~siAT~lGargt~~~a~~~y~~Aa~l~~~----~~~--P~ 235 (291)
T PRK13105 162 AGATFTPALWIALGAFFLWGMASQAFGAVQDVVADREAGLSSIATVLGARGTVRLAVLLYLLAAVLMLF----TPW--PG 235 (291)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH----CCC--CH
T ss_conf 078888147999999999999987740335665014319132343542158999999999999999985----688--18
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999950488997899---999879899999999999998
Q gi|254780360|r 237 YGIIVFFLGYHFTLWAWRTFLCKEDKDIRVT---KKLFLESITYLFVLFTILMVD 288 (305)
Q Consensus 237 yli~ali~~~~~l~~a~~~~~~~~~~~~k~a---~klF~~S~~yl~ilfl~liid 288 (305)
+..... .+..+.-+.... ..+|++++++ +|.|...|..-+.+...+++.
T Consensus 236 ~~aa~~--~l~yl~~~~~~~-~~~d~~~e~Anr~wr~fl~ln~~~G~vvt~~Li~ 287 (291)
T PRK13105 236 WIAAIL--ALPYILNAARFW-NITDTDAEQANRGWKRFLWLNYLVGFVVTMLLIA 287 (291)
T ss_pred HHHHHH--HHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999--999999872650-4778998888667999999999999999999999
No 43
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.84 E-value=1e-17 Score=124.29 Aligned_cols=280 Identities=18% Similarity=0.141 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HCCCHHHHCHH
Q ss_conf 653799999962689999999999999970---8989989999999999999999998863306612--01371210705
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLA---PGHISVLKSVISIFAIAMGAGASGALNMYYDADI--DKMMARTASRP 79 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la---~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~i--D~~~~RT~~RP 79 (305)
-+|.|..++-+||+.....+.|.+.|..+| .+..++..++..+++..+...+.+..||+.|-+. |+..+ ++
T Consensus 9 ~s~~k~W~~A~RP~tL~as~~PvlvG~alA~~~~g~f~~~~~ll~ll~~~llqi~~Nl~NDY~D~~~G~D~~~~----~~ 84 (304)
T PRK07419 9 PSRRKLWKAAIKPPMYSVAIMPILVGTAWALGEGGVFRLDQFIGFLLAAILILAWENLSNDVFDAETGIDVNKF----HS 84 (304)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CC
T ss_conf 74899999987763789999999999999998589866999999999999999999987515465258875667----88
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHCCCCCCHHHHHHH-HHHHHH
Q ss_conf 665304789899988887766899---98863445899999998886544454--43-102665605888877-664221
Q gi|254780360|r 80 IPLGQISPWEAWVLGVSLAVSSIV---IMGLAINWVSATLLFMSIFCYVVIYT--IW-LKRFTPQNIVIGGIA-GAIPPM 152 (305)
Q Consensus 80 l~~g~is~~~a~~~~~~l~~~~~~---~l~~~~n~~~~~l~~~~~~~y~~iYt--p~-lKR~t~~~~~~~~i~-ga~~~l 152 (305)
+....-++++....+..+...+.. .+....++....++..+++. .+.|| |+ +++. .+.-+..++. |-++++
T Consensus 85 ~~~~~~~~~~v~~~~~~~l~~~~~~g~~l~~~~g~~ll~lg~~~~~~-~~~Yt~~P~~l~y~-glGe~~v~~~fG~l~v~ 162 (304)
T PRK07419 85 VVNLTGNRSLVFWLANLFLLLGLLGILAIALQSDWTVLALVLLCCFL-GYLYQGPPFRLGYQ-GLGEPLCWLAFGPLATA 162 (304)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHH
T ss_conf 76777888999999999999999999999845449999999999999-88636898467766-50279999998799999
Q ss_pred HEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10132368856632111478888999999999865356666410133512433887789974345689899876421022
Q gi|254780360|r 153 IGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGF 232 (305)
Q Consensus 153 ~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~ 232 (305)
..+...+++.+..++......-+++..-=.+=.++|+|.|+++|-+++++..|+|++++.-.................+.
T Consensus 163 g~~y~q~~~~~~~~~~~s~~~gll~~~iL~~Nn~rD~e~D~~~gk~Tl~v~lG~~~a~~~~~~l~~~~y~~~~~~~~~g~ 242 (304)
T PRK07419 163 AALYSQTPSWSLIPWAASLILGLATTLILFCSHFHQVEDDLAAGKRSPVVRLGTARGAQLLPWFVGLIYALELLPVLLGF 242 (304)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999828555999999999999999999976674113179759850577877188999999999999999999999705
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHH-HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1089999999999999999999995048899--7899999-8798999999999999986608
Q gi|254780360|r 233 ASVTYGIIVFFLGYHFTLWAWRTFLCKEDKD--IRVTKKL-FLESITYLFVLFTILMVDHLID 292 (305)
Q Consensus 233 ~g~~yli~ali~~~~~l~~a~~~~~~~~~~~--~k~a~kl-F~~S~~yl~ilfl~liid~~i~ 292 (305)
..+.. ........+.....|..+...++. .+.++.. =+.+..++.++.++++++.++|
T Consensus 243 ~p~~~--ll~ll~lPla~~~~~~v~~~~~~p~~l~~~~~~t~~~~~l~giLl~iGllls~ll~ 303 (304)
T PRK07419 243 WPWTT--LLSLISLPFAIALIRLVRRNHDQPERISNSKFLAVRFQFLSGLLLSLGLILAYLLP 303 (304)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 16999--99999999999999999984898999987899999999999999999999996637
No 44
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.83 E-value=2.6e-17 Score=121.84 Aligned_cols=286 Identities=16% Similarity=0.164 Sum_probs=184.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHC--CCH
Q ss_conf 91036537999999626899999999999999708--9-899899999999999999999988633066--1201--371
Q gi|254780360|r 1 MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAP--G-HISVLKSVISIFAIAMGAGASGALNMYYDA--DIDK--MMA 73 (305)
Q Consensus 1 ~~~~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~--~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~--~iD~--~~~ 73 (305)
|-.+..|.+.++|++|||.......|...|-.+|. + ..++...++.+++..+.....+..|||.|- -.|. ...
T Consensus 1 ~~~~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~ 80 (303)
T COG1575 1 MSQKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDR 80 (303)
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98561799999986486401788999999999999974653899999999999999999998776223422778898741
Q ss_pred HHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHH-H
Q ss_conf 21070566530478989998888776689998---863445899999998886544454431026656--05888877-6
Q gi|254780360|r 74 RTASRPIPLGQISPWEAWVLGVSLAVSSIVIM---GLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQ--NIVIGGIA-G 147 (305)
Q Consensus 74 RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l---~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~--~~~~~~i~-g 147 (305)
++.++-+..++++++..+...+.+...+.++. ....++....++..+++. .+.||--=|+.++. .-+..+++ |
T Consensus 81 ~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~-g~~YTgGp~PlgY~gLGEi~~~vffG 159 (303)
T COG1575 81 LKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAA-GILYTGGPFPLGYMGLGEIFVGVFFG 159 (303)
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-EEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 24665431345888899999999999999999999997446999999999973-01013699674667788999999998
Q ss_pred HHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64221101323688566321114788889999999998653566664101335124338877899743456898998764
Q gi|254780360|r 148 AIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLP 227 (305)
Q Consensus 148 a~~~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~ 227 (305)
-+.+.+.+...++++++..++......+=+..--.+=.++|.|+|+|+|-+++|+..|+|.++..-........++....
T Consensus 160 ~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~ 239 (303)
T COG1575 160 PLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIF 239 (303)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999996164108989999999999999998621334501786696011346254758999999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 210221089999999999999999999995048899-7-8999998798999999999999986
Q gi|254780360|r 228 TMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKD-I-RVTKKLFLESITYLFVLFTILMVDH 289 (305)
Q Consensus 228 ~~~~~~g~~yli~ali~~~~~l~~a~~~~~~~~~~~-~-k~a~klF~~S~~yl~ilfl~liid~ 289 (305)
...+.....++. ..+.......+.+....++.+. . ...+..-+.+..+..++++++++..
T Consensus 240 ~i~~~~~~~~ll--~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~ 301 (303)
T COG1575 240 VILGLFPVWGLL--FLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILLSQ 301 (303)
T ss_pred HHHHHCCHHHHH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999622179999--99999999999999986168347779999999999999999999999996
No 45
>TIGR02056 ChlG chlorophyll synthase, ChlG; InterPro: IPR011799 This entry represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources . Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP)..
Probab=99.79 E-value=2.6e-19 Score=133.69 Aligned_cols=244 Identities=19% Similarity=0.206 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHH----HHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHH
Q ss_conf 537999999626899999999999999708989--9899----9999999999999999886330661201371210705
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHI--SVLK----SVISIFAIAMGAGASGALNMYYDADIDKMMARTASRP 79 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~--~~~~----~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RP 79 (305)
.++|.-++|+||-.+.-+.|..++|... +|+. +.++ ....++.+-+.+|-..++||++|||+|+.|+ +.||
T Consensus 14 ~~Wkirlql~kP~tW~Pl~WGvvCGaa~-sGn~~W~~e~v~k~~~Cm~~sGP~ltGytqt~nd~ydr~idaine--PyrP 90 (306)
T TIGR02056 14 SKWKIRLQLTKPVTWIPLVWGVVCGAAA-SGNYTWSLEDVLKAILCMLLSGPLLTGYTQTLNDFYDREIDAINE--PYRP 90 (306)
T ss_pred CEEEEEEEEECCCCCCCHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCC--CCCC
T ss_conf 1245676652573211133222201325-675211589999999998860410100456666553010123127--7877
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHCCCCCCHH-HHHHHHH
Q ss_conf 6653047898999888877668999886344-------5899999998886544454---431026656058-8887766
Q gi|254780360|r 80 IPLGQISPWEAWVLGVSLAVSSIVIMGLAIN-------WVSATLLFMSIFCYVVIYT---IWLKRFTPQNIV-IGGIAGA 148 (305)
Q Consensus 80 l~~g~is~~~a~~~~~~l~~~~~~~l~~~~n-------~~~~~l~~~~~~~y~~iYt---p~lKR~t~~~~~-~~~i~ga 148 (305)
+|||.||..|...--..+.+.|+.+.. .+. |....+++.+-+. .++|+ ..+|+.+|...+ .|+---+
T Consensus 91 iPsGais~P~v~tq~~~l~~~G~~~a~-~ld~WaGh~~P~v~~lal~Gs~~-~~iysaPPlklkqnGW~Gn~alGasyi~ 168 (306)
T TIGR02056 91 IPSGAISVPEVVTQVVLLLLAGLAVAF-ILDLWAGHETPTVTVLALFGSLL-AYIYSAPPLKLKQNGWLGNYALGASYIA 168 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCEEHHHHHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 887655661699999999996778877-66431166775000134677898-8876088621112653010434123432
Q ss_pred HHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42211013236885663211147888899999999986535666641013351243388778997434568989987642
Q gi|254780360|r 149 IPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPT 228 (305)
Q Consensus 149 ~~~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~ 228 (305)
+|--.|- |.-|++++....+-.+-.+=-.+--..--.+..|.||+.|+.|+|+.+|.++ +..++...+-....++..+
T Consensus 169 lPWWaG~-alfG~l~~~~~vltl~ys~aGlGiaivndfksveGdr~lGlqslPv~fG~~t-a~WiCv~~id~~q~~~a~y 246 (306)
T TIGR02056 169 LPWWAGQ-ALFGELTPDVVVLTLLYSLAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIET-AKWICVVAIDVTQLLVAAY 246 (306)
T ss_pred HHHHHCH-HHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHCCHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 0013110-2311112356677778888412221011001012202203011003440000-2211135567888889888
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1022108999999999999999999999
Q gi|254780360|r 229 MLGFASVTYGIIVFFLGYHFTLWAWRTF 256 (305)
Q Consensus 229 ~~~~~g~~yli~ali~~~~~l~~a~~~~ 256 (305)
+.......|......+-+..+....+.+
T Consensus 247 l~~~~~~~ya~~lv~liiPqi~fq~~yf 274 (306)
T TIGR02056 247 LLAIGKNLYALILVLLIIPQIVFQDKYF 274 (306)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8861340799999999720576644555
No 46
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.79 E-value=3e-17 Score=121.45 Aligned_cols=213 Identities=12% Similarity=0.106 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHH
Q ss_conf 5379999996268999999999999997089899----899999999999999999988633066120137121070566
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHIS----VLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIP 81 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~----~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~ 81 (305)
..++..+..+||+-|.-...+...|++++.+..+ +.....+..-.+=.--.=+-+||++|+|.|.+|||+-.|.
T Consensus 6 ~~lR~Ll~~SRP~~WvnTagp~~~g~~la~~~~~~~~~~~~~~~~i~Fl~PyNllmYGINDvfD~esD~~NPRKGG~E-- 83 (281)
T PRK12875 6 TLARYLFRLSRPRFWLYLGGPVVVGVAYGATTVGELFSPAAVLLFLYFLFPANIFLYGVNDWFDADTDETNPKKDGRE-- 83 (281)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCC--
T ss_conf 999999996670688861308999999955661344288999999999877778873442333212103488766733--
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHEEECC
Q ss_conf 5304789899988887766899988634458999999988865444544---3102665605888877664221101323
Q gi|254780360|r 82 LGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIVIGGIAGAIPPMIGWASV 158 (305)
Q Consensus 82 ~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~~~~i~ga~~~l~g~~a~ 158 (305)
|+...+....-.+.....-........++. .........+..+.|+- ..|.+..+.-+ -+.....|.+.|++.+
T Consensus 84 -~~~~~~~~~~~~v~~~~~~~~~f~l~~~~~-~~~~l~~~~f~~~~YSappLRFKerP~LDS~-Sn~~yv~P~v~~~al~ 160 (281)
T PRK12875 84 -VRYRGDAAVAAIVVLTGALSLLFLAPLPLA-GWPYLLAFLFLSYEYSAPPLRFKTTPVLDSL-SNGLYILPGIAAYALA 160 (281)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf -345787445799999879999999850388-9999999999998613885255665030000-2023650699999985
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 6885663211147888899999999986535666641013351243388778997-434568989987
Q gi|254780360|r 159 TGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHI-LIYTVLTSIVGV 225 (305)
Q Consensus 159 ~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i-~~ysi~~~llsl 225 (305)
++... ++..-...++|.++--.-=|.||.|.||++|+.|.+...|.|.|.+.. ..|..+...+..
T Consensus 161 ~g~~p--~~~~l~a~~lW~ma~HaF~AvqDI~~DR~aGI~T~AT~LGar~T~~~~~~~wl~aa~~~~~ 226 (281)
T PRK12875 161 SGALP--PLAAVAAGWLWAMGMHTFSAIPDIEPDRAAGIQTTATFLGRRRALAYCAGCWLLAAAVFAF 226 (281)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHC
T ss_conf 26775--1999999999999987734457774013328400001444336899999999999999960
No 47
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.79 E-value=2.8e-17 Score=121.63 Aligned_cols=248 Identities=15% Similarity=0.064 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCC
Q ss_conf 37999999626899999999999999708989989999999999999999998863306612013712107056653047
Q gi|254780360|r 7 RLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQIS 86 (305)
Q Consensus 7 k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is 86 (305)
-+|..+..+||..|.-...+...|++++++..++.....+..-.+=..-.=+-+||++|+|.|.+|||+-... -.+++
T Consensus 19 ~Lr~L~~~SRP~~WinTa~p~~~g~~l~g~~~~~~~v~l~i~fl~PyNl~mYGINDvfD~esD~~NPRKGg~E--Ga~l~ 96 (298)
T PRK13595 19 PLRRLLLISRPVLWINTIGSGVVGVWLTGHLFTLGVLPLLLWLTLPFNLLIYGLNDIADQETDAANPRKGSWE--GARIR 96 (298)
T ss_pred HHHHHHHHCCCHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCC--CCEEC
T ss_conf 8999998457423330056899999997254778999999999988788874442122212014588756745--50344
Q ss_pred HHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHEEECCCC
Q ss_conf 8989--9988887766899-988634458999999988865444544---310266560588887766422110132368
Q gi|254780360|r 87 PWEA--WVLGVSLAVSSIV-IMGLAINWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIVIGGIAGAIPPMIGWASVTG 160 (305)
Q Consensus 87 ~~~a--~~~~~~l~~~~~~-~l~~~~n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~ 160 (305)
+++. ...+..+...-+. .+....++.+........+. .+.|+- ..|.+..+.-+- +.....|+..+..+.++
T Consensus 97 ~~~~r~~l~a~~~~~~pf~~~l~~~~~~~~~~~L~~~~~~-~~aYSappLRFKerP~LDS~s-n~~y~~p~~~~~lalg~ 174 (298)
T PRK13595 97 PGEVRPIARAVLLLNAPFLLYFALVLPPAANAALLLYAAV-FVGYSLPPLRFKARPFLDSLS-NAAYALPLVLVPLALGA 174 (298)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCHHC-CHHHHHHHHHHHHHHCC
T ss_conf 0236612389999705899999984688899999999999-984048853456665520120-04576789999998058
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 85663211147888899999999986535666641013351243388778997434-56898998764210221089999
Q gi|254780360|r 161 DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIY-TVLTSIVGVLPTMLGFASVTYGI 239 (305)
Q Consensus 161 ~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~y-si~~~llsll~~~~~~~g~~yli 239 (305)
. .+|..-...++|.++--.-=|+||.|.||++|+.|.++..|.|.|.+..... .++..++.. .+ ...-
T Consensus 175 ~---~~~~al~a~~lW~ma~HaF~AvqDI~~DR~AGI~T~AT~lGaRgT~~~~~~~~llA~~l~~~----~~--~p~a-- 243 (298)
T PRK13595 175 P---PVWPALLGLMAWSVAKHAFDAVQDIVEDREAGIRTVAVRLGVRGTALWSGAWWILAGALFAP----VS--RPVA-- 243 (298)
T ss_pred C---CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHC----CC--HHHH--
T ss_conf 8---42899999999999987734456674003338512343543058999999999999999836----52--2789--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999999999504889978999998798
Q gi|254780360|r 240 IVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLES 274 (305)
Q Consensus 240 ~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S 274 (305)
......-..+...++ +|+++++|.+.-+.|
T Consensus 244 --~~~~~~~~~~~~~~~---~d~~~e~A~r~wr~f 273 (298)
T PRK13595 244 --AALWAIAGGLALALL---RRPRPETGHRLYRLS 273 (298)
T ss_pred --HHHHHHHHHHHHHHH---CCCCHHHHHCCCHHH
T ss_conf --999999999999997---289867774134134
No 48
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.08 E-value=4.9e-08 Score=66.85 Aligned_cols=215 Identities=13% Similarity=0.192 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHH
Q ss_conf 3653799999962---689999999--999999970898---99899999999999999999988633066120137121
Q gi|254780360|r 4 QVFRLNFFIVLLK---PRVMSLAIY--TAFVGIVLAPGH---ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMART 75 (305)
Q Consensus 4 ~~~k~~~y~~L~k---p~~~~~~~~--~~~~g~~la~~~---~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT 75 (305)
|+.|++-|.+=.= |+......+ ++..=-.++.+. ++....++.++.++.-=-.--+.+|--|-|.|++..
T Consensus 1 mlKRl~IY~kErfPl~~~~~l~~~~~fsi~~~~~l~~~~~~f~~~~~~~ig~f~~f~ff~~LRIaDEFKDyE~D~ryr-- 78 (299)
T PRK13592 1 MIKRLNVYLKEMYPLLPRLILSLTLFFEIYMITLLSNHISSFRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLF-- 78 (299)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC--
T ss_conf 924689999855644222389999999999999970787667731789999999999999999875630466787508--
Q ss_pred HCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHH
Q ss_conf 0705665304789899988887766899988634458999999988865444544310266-----56058888776642
Q gi|254780360|r 76 ASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFT-----PQNIVIGGIAGAIP 150 (305)
Q Consensus 76 ~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t-----~~~~~~~~i~ga~~ 150 (305)
++||+|+|++|++|-.+.+.............+.|..-.. .+ +++|.-+|-..- -.++.+..+..-.|
T Consensus 79 p~RplPrG~VtlkdL~i~g~~~~ai~i~l~~lf~~~il~~--~~-----v~iY~~LM~~eFF~~ewL~k~l~lylvSHm~ 151 (299)
T PRK13592 79 PHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWF--LF-----LYIYGTLMSFWFFKRDKIQNSLPLALVTHNP 151 (299)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HH-----HHHHHHHHHHHHCCHHHHHCCCHHHHHHCCH
T ss_conf 7788986766499999999999999999999984445889--99-----9999999999974399872264268766168
Q ss_pred --HHHEEECCC-------CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf --211013236-------885-6632111478888999999999865356666410133512433887789974345689
Q gi|254780360|r 151 --PMIGWASVT-------GDV-SIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLT 220 (305)
Q Consensus 151 --~l~g~~a~~-------~~~-~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~ 220 (305)
|++.+..++ +.. +...+++...+++ .+..|-.+-+.|.-|.+.++.|-.-.+|.|++.+.+..-+..-
T Consensus 152 Im~li~lyiisf~~~~~~lp~~~~~~~l~~~t~yf--~gli~EI~RKiraPeeE~e~VTYSkLfG~kka~~~~~~l~~~d 229 (299)
T PRK13592 152 VMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYF--PSLIWEVCRKIRAPKDETEYVTYSKLFGYKKATRFIEVVTLLD 229 (299)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC--CHHHHHHHHHCCCCCCCCCCCEEEHHCCCCCCEEEEEHHHHHH
T ss_conf 99999999999988605898751579999999970--5444987622279844667701202204566147772899999
Q ss_pred HHHHHHHHH
Q ss_conf 899876421
Q gi|254780360|r 221 SIVGVLPTM 229 (305)
Q Consensus 221 ~llsll~~~ 229 (305)
.+..+...+
T Consensus 230 ~~t~~~l~~ 238 (299)
T PRK13592 230 ILTNFALLW 238 (299)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 49
>KOG4581 consensus
Probab=98.92 E-value=1.1e-09 Score=76.67 Aligned_cols=274 Identities=18% Similarity=0.198 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHH--HHHHHHHHHHHHHHHHHHHHHHC--CCHHCCCHHHHC
Q ss_conf 6537999999626899999999999999708---9899899--99999999999999998863306--612013712107
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAP---GHISVLK--SVISIFAIAMGAGASGALNMYYD--ADIDKMMARTAS 77 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~---~~~~~~~--~~~~~~~~~l~~~a~~~~Nd~~D--~~iD~~~~RT~~ 77 (305)
..|.+.|+--.||.--+-.+.+...|..+|- +..++.. .++..++...+.++|+..|.++| +.||++-. .+
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~kka--dd 135 (359)
T KOG4581 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKA--DD 135 (359)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCC--CC
T ss_conf 8999878763164423233364766647877642544416899888775522441156423546666533333344--30
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHH
Q ss_conf 05665304789899988887766899988--634458---999999988865444544--31026656058888776642
Q gi|254780360|r 78 RPIPLGQISPWEAWVLGVSLAVSSIVIMG--LAINWV---SATLLFMSIFCYVVIYTI--WLKRFTPQNIVIGGIAGAIP 150 (305)
Q Consensus 78 RPl~~g~is~~~a~~~~~~l~~~~~~~l~--~~~n~~---~~~l~~~~~~~y~~iYtp--~lKR~t~~~~~~~~i~ga~~ 150 (305)
|.++...+.+.+..-++..+...|+.... ..+.|. ..++.-++-..-.+.||- -.|-..--..+++-.-|-+.
T Consensus 136 rtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyialgdliili~fgpia 215 (359)
T KOG4581 136 RTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILILFGPIA 215 (359)
T ss_pred HHHHHHHCCHHHEEHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCEEEEEEECHHH
T ss_conf 55888725831130134799970404899999578766435355210575543267546652787406789887605199
Q ss_pred HHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 21101323688566321114788889999999998653566664101335124338877899743456898998764210
Q gi|254780360|r 151 PMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTML 230 (305)
Q Consensus 151 ~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~ 230 (305)
++..++..+|++.+.++....-..+=|-+---.-.-+|.|.||++|+.++++..|+..+ +++-......+.+++..+.
T Consensus 216 vlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s--~ily~~llf~py~lf~i~~ 293 (359)
T KOG4581 216 VLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTAS--HILYAMLLFAPYLLFFIFA 293 (359)
T ss_pred HHHHHHHHCCCEEEEEEHHEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCHH--HHHHHHHHHHHHHHHHHHH
T ss_conf 99999986286158761110110013577760588755434511472899976466388--9999999998999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2210899999999999999999999950488---99789999987989999999999
Q gi|254780360|r 231 GFASVTYGIIVFFLGYHFTLWAWRTFLCKED---KDIRVTKKLFLESITYLFVLFTI 284 (305)
Q Consensus 231 ~~~g~~yli~ali~~~~~l~~a~~~~~~~~~---~~~k~a~klF~~S~~yl~ilfl~ 284 (305)
..-...+. . -.+++.+.....|++++.+. -..+.++-.|...+.|....+.+
T Consensus 294 ~~~si~~~-l-plltip~afqiek~frneqa~~~lp~qtakln~~~gi~yv~~~~~a 348 (359)
T KOG4581 294 LHCSISFA-L-PLLTIPMAFQIEKQFRNEQAFHKLPQQTAKLNFFFGIFYVFACCCA 348 (359)
T ss_pred HHHHHHHH-H-HHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88899887-4-7741326776999862176664440666668889999999999972
No 50
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase; InterPro: IPR011937 This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I . The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility..
Probab=98.52 E-value=7.6e-05 Score=47.92 Aligned_cols=236 Identities=17% Similarity=0.161 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHCCCHHHHCHHHHHHH
Q ss_conf 62689999999999999970---898998999999999999999999886330661-------20137121070566530
Q gi|254780360|r 15 LKPRVMSLAIYTAFVGIVLA---PGHISVLKSVISIFAIAMGAGASGALNMYYDAD-------IDKMMARTASRPIPLGQ 84 (305)
Q Consensus 15 ~kp~~~~~~~~~~~~g~~la---~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~-------iD~~~~RT~~RPl~~g~ 84 (305)
.||-...-...|-..|-..+ ++..+...+..++.+..+.-.=-|=-||.+|.| ....++=|.+|-+..-
T Consensus 6 iK~PlYsVAv~Pi~~g~A~a~~~~g~~~~~~f~~FL~aaililaW~NLtNDvFDs~TGiD~~K~HS~V~LTG~r~lv~~- 84 (293)
T TIGR02235 6 IKPPLYSVAVMPILVGTAVALGKGGVVHLDRFVLFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLVFW- 84 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHH-
T ss_conf 2521457889988999899987077300488999999999999998406762124567551014443564164068999-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHCCCCC--CHHHHHHHHHHHHHHEEEC--
Q ss_conf 47898999888877668999886344-589999999888654445--4431026656--0588887766422110132--
Q gi|254780360|r 85 ISPWEAWVLGVSLAVSSIVIMGLAIN-WVSATLLFMSIFCYVVIY--TIWLKRFTPQ--NIVIGGIAGAIPPMIGWAS-- 157 (305)
Q Consensus 85 is~~~a~~~~~~l~~~~~~~l~~~~n-~~~~~l~~~~~~~y~~iY--tp~lKR~t~~--~~~~~~i~ga~~~l~g~~a-- 157 (305)
-+ .+.+.++.+++..+..... .....+...++++ -+.| .|+ |-++. .-.+-.+| ++|+.--+|
T Consensus 85 ----~~-n~~Ll~Gl~~i~~ls~~~~D~~Vl~Lv~~~cfL-GY~YQGPPF--RLGY~GLGEpiC~~~--FGPlA~AAA~~ 154 (293)
T TIGR02235 85 ----LA-NFFLLIGLVGIAALSWRSQDITVLALVGLCCFL-GYLYQGPPF--RLGYQGLGEPICWLA--FGPLAIAAALY 154 (293)
T ss_pred ----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCH--HHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_conf ----99-999999999999998886238999999999997-530378742--444103138999987--50899999998
Q ss_pred -CCC---CCCCCCCC----HHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -368---85663211----1478888999-----9999998653566664101335124338877899743456898998
Q gi|254780360|r 158 -VTG---DVSIASLV----MFLIIFLWTP-----PHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVG 224 (305)
Q Consensus 158 -~~~---~~~~~~~~----l~~~~~~W~~-----~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~lls 224 (305)
.++ +.++.+|. ++.--..||- .|| +-.|||+++|=||.=|..|-++++...-........+.
T Consensus 155 ~q~~~~~~~~~~~w~~~i~~G~G~~~~TtliLFCsHF-----HQv~dD~a~GK~sP~VRLGt~~~A~~~~w~~~~~Y~~~ 229 (293)
T TIGR02235 155 AQSQSVISFSLIPWKAAILVGAGSALATTLILFCSHF-----HQVEDDLAHGKRSPVVRLGTKRAAKIVPWVILLLYVVL 229 (293)
T ss_pred HHCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CCHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 7265520231135787888437168999999984234-----64167874389887210135558889999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-CHHHHH
Q ss_conf 7642102210899999999999999999999950488-9-978999
Q gi|254780360|r 225 VLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKED-K-DIRVTK 268 (305)
Q Consensus 225 ll~~~~~~~g~~yli~ali~~~~~l~~a~~~~~~~~~-~-~~k~a~ 268 (305)
..+...|.....- .....++....+-.+..+...+ + -.++|+
T Consensus 230 ~~~v~~G~~P~~~--LL~l~s~P~A~~Li~~~~~~h~~P~~i~n~K 273 (293)
T TIGR02235 230 LIAVIGGFLPWTT--LLALASLPWAVKLIRLLKQNHNKPEQIKNSK 273 (293)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCHHHCCH
T ss_conf 9999862646999--9999600389999999987535850454137
No 51
>PRK13591 ubiA prenyltransferase; Provisional
Probab=98.08 E-value=3.8e-07 Score=61.58 Aligned_cols=147 Identities=16% Similarity=0.043 Sum_probs=75.0
Q ss_pred HHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 9998863306612013712107056653047898999888877668999886344589999999888654445443----
Q gi|254780360|r 56 ASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIW---- 131 (305)
Q Consensus 56 a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~---- 131 (305)
+.+++|+-.|-|-|+.|+ ++|-=.++++ ++.-++.....|..++....-. .+.++.++. -++||--
T Consensus 73 svYtLdRald~eEDaiNr--~El~g~nk~i----gl~~sl~afl~g~~il~~~Gil---~~~f~Pli~-GylYSkgikig 142 (304)
T PRK13591 73 SVYTLDRALDSEEDAVNR--KELIGSNKKI----GLAVSLLAFLIGTYILAREGML---LLAFLPLIT-GYLYSKGIKIG 142 (304)
T ss_pred EEEEECCCCCCHHHCCCC--HHHCCCCCHH----HHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHE-EEEECCCCEEE
T ss_conf 998721122760210451--7650753102----4999999999999998856327---544655631-10221461231
Q ss_pred -----HHCCCCCCHHHHHHHHHHHHHH--EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf -----1026656058888776642211--013236885663211147888899999999986535666641013351243
Q gi|254780360|r 132 -----LKRFTPQNIVIGGIAGAIPPMI--GWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVV 204 (305)
Q Consensus 132 -----lKR~t~~~~~~~~i~ga~~~l~--g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~ 204 (305)
+|.---.-.++.|++++.++.. |+-+ ++.-+..+ .|....+-.+...-.|-.+|.|.|..+|+|++|+..
T Consensus 143 k~~~KLKgg~gvKniIVg~tWg~~iA~l~~~~~--~s~~~v~i-Vf~FFg~klFINS~V~DfkDVkGD~~AGIkTLP~~L 219 (304)
T PRK13591 143 KFALKLKGGLGVKNIVVGITWGAFIAGLAGSYC--GSMLPVVL-VFLFFGVKLFINSAIYDFKDIKGDTLAGIKTLPVSL 219 (304)
T ss_pred EEEEEECCCCCCEEEEEEEECCCHHHHHHHHCC--CCCCHHHH-HHHHHHHHHHHHHHHCCCHHCCCCHHCCCCCCCHHH
T ss_conf 015885277762048998751322666534202--56414578-899998999875231002103664430700076231
Q ss_pred HHHHHHHHHHH
Q ss_conf 38877899743
Q gi|254780360|r 205 TDRTTKMHILI 215 (305)
Q Consensus 205 G~k~t~~~i~~ 215 (305)
|+++|+..-..
T Consensus 220 G~~~Tr~~L~~ 230 (304)
T PRK13591 220 GEQKTRNLLLG 230 (304)
T ss_pred CCHHHHHHHHH
T ss_conf 63256649999
No 52
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=94.67 E-value=0.08 Score=30.00 Aligned_cols=10 Identities=10% Similarity=0.009 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999865
Q gi|254780360|r 178 PPHFWSLALL 187 (305)
Q Consensus 178 ~~~~~~~a~~ 187 (305)
..||+.....
T Consensus 371 vsHDiY~~vi 380 (529)
T COG4147 371 VSHDLYAMVI 380 (529)
T ss_pred HHHHHHHHHH
T ss_conf 7768999971
No 53
>PRK13594 consensus
Probab=94.55 E-value=0.33 Score=26.33 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=8.8
Q ss_pred HHHCCCHHCCCHHHHCHH
Q ss_conf 330661201371210705
Q gi|254780360|r 62 MYYDADIDKMMARTASRP 79 (305)
Q Consensus 62 d~~D~~iD~~~~RT~~RP 79 (305)
..+.-=.|.+..| -|||
T Consensus 52 ~~iND~~D~eiD~-iN~P 68 (278)
T PRK13594 52 NVINDYFDKEIDA-INRP 68 (278)
T ss_pred HHHHHHHHHHCCC-CCCC
T ss_conf 9999787860453-4599
No 54
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=94.28 E-value=0.38 Score=25.97 Aligned_cols=32 Identities=19% Similarity=-0.022 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHCCCHHCCC-HHHHCHHHHH
Q ss_conf 9999999988633066120137-1210705665
Q gi|254780360|r 51 AMGAGASGALNMYYDADIDKMM-ARTASRPIPL 82 (305)
Q Consensus 51 ~l~~~a~~~~Nd~~D~~iD~~~-~RT~~RPl~~ 82 (305)
.++.-...+..+..+-=.|-+. ..+++|.=|+
T Consensus 50 ll~~~~~q~~~N~~NDY~D~~~G~D~~~~~g~~ 82 (300)
T PRK06080 50 LIAALLLQIAVNLANDYGDYVKGTDTEDRVGPL 82 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999999988687886477743146884
No 55
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=93.76 E-value=0.48 Score=25.36 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHCCCHHCCCHHHHCHH
Q ss_conf 99999886330661201371210705
Q gi|254780360|r 54 AGASGALNMYYDADIDKMMARTASRP 79 (305)
Q Consensus 54 ~~a~~~~Nd~~D~~iD~~~~RT~~RP 79 (305)
....+.--+.+..=.|+...| .|||
T Consensus 48 ~~l~~~a~~~iNd~~D~diD~-~n~~ 72 (281)
T PRK12884 48 AFFASASAFALNDYFDVEIDR-INRP 72 (281)
T ss_pred HHHHHHHHHHHCCCCHHHHCC-CCCC
T ss_conf 999999998853624084250-0689
No 56
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro: IPR004657 This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis. A key reaction in the biosynthesis of menaquinone involves the conversion of the soluble bicyclic naphthalenoid compound 1, 4-dihydroxy-2-naphthoic acid (DHNA) to the membrane-bound demethylmenaquinone .; GO: 0016740 transferase activity, 0009234 menaquinone biosynthetic process, 0016021 integral to membrane.
Probab=91.57 E-value=0.96 Score=23.58 Aligned_cols=185 Identities=19% Similarity=0.101 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHCCCHHHHCHHHHHHHCCHHHHHHHHH---HH
Q ss_conf 99999999997089899899999999999999999988633066--12013712107056653047898999888---87
Q gi|254780360|r 23 AIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDA--DIDKMMARTASRPIPLGQISPWEAWVLGV---SL 97 (305)
Q Consensus 23 ~~~~~~~g~~la~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~--~iD~~~~RT~~RPl~~g~is~~~a~~~~~---~l 97 (305)
.......+++..+...++......+.......-..+.-||+-|. .-|+..+--+-|-+-+|.+++++...-.. .+
T Consensus 12 ~~~g~~~~~w~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~g~d~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~ 91 (286)
T TIGR00751 12 IVAGTGLAWWLGPQGFDWLVALLALLTAGLLQILSNLANDYGDGVKGSDKDDRIGPLRGVGKGLITPKELKWALILSLAL 91 (286)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 76432455432620003899999999999999987531000233467775101001343332101278889999999999
Q ss_pred HHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCC-------CC
Q ss_conf 766-8999886344589-----9999998886544454431026656058888776642211013236885-------66
Q gi|254780360|r 98 AVS-SIVIMGLAINWVS-----ATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV-------SI 164 (305)
Q Consensus 98 ~~~-~~~~l~~~~n~~~-----~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~-------~~ 164 (305)
... |..+.....+..+ ..++...+.. .+.||.-.|.+++... |.+ +.-...||.++.|+- ++
T Consensus 92 ~~~~g~~~~~~~~~~~~d~~~~~~~g~~~~~~-~~~~~~g~~p~g~~g~--g~~--~~~~~~g~~~~~g~~~~~~~~~~~ 166 (286)
T TIGR00751 92 GALSGLALVGLAAPNLADLFWFLGLGGLCIVG-AWTYTGGSKPYGYAGL--GDL--SVLVFFGPLGVLGTWYLQAHTLDW 166 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCC--HHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98877899987544578899999987999998-8765215664442220--146--777777556652345555543335
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 321114788889999999998653566664101335124338877899
Q gi|254780360|r 165 ASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMH 212 (305)
Q Consensus 165 ~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~ 212 (305)
....-....-.-.-.--..-..+|.+.|+++|-.++.+..|+.+++..
T Consensus 167 ~~~~~~~~~g~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~g~~~~~~~ 214 (286)
T TIGR00751 167 AGLLPAVATGLLACAVLNINNLRDIPTDAKAGKNTLAVRLGDAKGRVY 214 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEHHHHHHHHH
T ss_conf 677666554467777765321110220010241000011101334688
No 57
>pfam00474 SSF Sodium:solute symporter family.
Probab=89.77 E-value=1.4 Score=22.60 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHCCCHHC
Q ss_conf 99999886330661201
Q gi|254780360|r 54 AGASGALNMYYDADIDK 70 (305)
Q Consensus 54 ~~a~~~~Nd~~D~~iD~ 70 (305)
|....+.-|++|+.+|+
T Consensus 65 ~~~~~T~~d~l~~Rygs 81 (406)
T pfam00474 65 NLGAYTMPDYLRKRFGG 81 (406)
T ss_pred HCCCCCHHHHHHHHHCC
T ss_conf 96993679999988289
No 58
>PRK12488 acetate permease; Provisional
Probab=89.47 E-value=1.5 Score=22.46 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=10.1
Q ss_pred HHHHHHH--HHHHHHHHHHHH
Q ss_conf 9999999--986535666641
Q gi|254780360|r 177 TPPHFWS--LALLCKDDYQKA 195 (305)
Q Consensus 177 ~~~~~~~--~a~~d~~dd~k~ 195 (305)
-.||-.. ++.+|.++=||.
T Consensus 276 GlPHIlvRF~tv~d~k~aR~S 296 (549)
T PRK12488 276 GLPHILMRFFTVSDAREARKS 296 (549)
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 380999999928889999998
No 59
>PRK09395 actP acetate permease; Provisional
Probab=86.04 E-value=2.4 Score=21.21 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=13.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99995048899789999987989999999
Q gi|254780360|r 253 WRTFLCKEDKDIRVTKKLFLESITYLFVL 281 (305)
Q Consensus 253 ~~~~~~~~~~~~k~a~klF~~S~~yl~il 281 (305)
++....+.+.+.|...+.-+.+.....++
T Consensus 389 Y~~~i~~g~ase~~~v~vsRia~vvvgvv 417 (551)
T PRK09395 389 YANVIKKGKATEREELRVSKITTLVLGVV 417 (551)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99984589988789999999999999999
No 60
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=85.78 E-value=2.5 Score=21.13 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHCCCHHCCCH
Q ss_conf 9999999886330661201371
Q gi|254780360|r 52 MGAGASGALNMYYDADIDKMMA 73 (305)
Q Consensus 52 l~~~a~~~~Nd~~D~~iD~~~~ 73 (305)
.-|....+.-|++++.+|.+..
T Consensus 89 ~rr~g~~T~pe~l~~Rf~s~~~ 110 (552)
T TIGR03648 89 LRKFGKYTVPDFIGDRYYSNTA 110 (552)
T ss_pred HHHCCCCCHHHHHHHHHCCCHH
T ss_conf 9987996469999988488455
No 61
>TIGR02840 spore_YtaF putative sporulation protein YtaF; InterPro: IPR014205 This entry represents YtaF, which represents a protein family identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome. The phylogenetic profile of the members matches the subset of the Firmicutes capable of forming endospores. These species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, and Geobacillus kaustophilus..
Probab=80.46 E-value=4.1 Score=19.85 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=25.6
Q ss_pred HHHCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf 530478989998888776----6899988634458999999
Q gi|254780360|r 82 LGQISPWEAWVLGVSLAV----SSIVIMGLAINWVSATLLF 118 (305)
Q Consensus 82 ~g~is~~~a~~~~~~l~~----~~~~~l~~~~n~~~~~l~~ 118 (305)
||.|+.+||..++++|++ .|......-.||....+..
T Consensus 127 SG~I~~kEAllLG~ALsLDafGaGiGAsl~G~~p~~~~~~~ 167 (215)
T TIGR02840 127 SGNITGKEALLLGIALSLDAFGAGIGASLLGLNPLATSILV 167 (215)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 86200899999999999999999899988611789999999
No 62
>PRK10484 putative symporter YidK; Provisional
Probab=69.42 E-value=8 Score=18.12 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHCCCHHCCCH
Q ss_conf 99999886330661201371
Q gi|254780360|r 54 AGASGALNMYYDADIDKMMA 73 (305)
Q Consensus 54 ~~a~~~~Nd~~D~~iD~~~~ 73 (305)
|....+.-|+.|+.+|++..
T Consensus 98 r~~~~T~pe~le~Ry~~~~r 117 (528)
T PRK10484 98 KSGIATIPDFLEERYDKTTR 117 (528)
T ss_pred HCCCCCHHHHHHHHCCCHHH
T ss_conf 83887659999865466068
No 63
>COG4125 Predicted membrane protein [Function unknown]
Probab=68.97 E-value=8.2 Score=18.06 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998863306612013712107056653047898999888877668999886344
Q gi|254780360|r 52 MGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAIN 110 (305)
Q Consensus 52 l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n 110 (305)
+.++-++++|-++..-+|+.++|-+.|--+.-| .-.|..|-..+.+.+.-+.+++.|
T Consensus 48 ~~atvAm~WN~vyN~lFd~~~rr~~~~rT~~vR--v~HAv~FE~gliv~lvP~iAw~L~ 104 (149)
T COG4125 48 LSATVAMIWNFVYNLLFDRAERRMGTRRTLAVR--VAHAVGFELGLIVILVPLIAWWLG 104 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998899999998750109999--999999975089874389999997
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=66.47 E-value=9.2 Score=17.76 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=11.2
Q ss_pred HHHHHHHHHCCCHHCCC
Q ss_conf 99988633066120137
Q gi|254780360|r 56 ASGALNMYYDADIDKMM 72 (305)
Q Consensus 56 a~~~~Nd~~D~~iD~~~ 72 (305)
...++-|++++.+|.+.
T Consensus 106 ~~~T~~e~l~~Ry~s~~ 122 (479)
T PRK09442 106 NAVTLNDYLFARYQSRL 122 (479)
T ss_pred CCCCHHHHHHHHHCCHH
T ss_conf 99658999998848868
No 65
>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=58.53 E-value=12 Score=17.02 Aligned_cols=20 Identities=25% Similarity=0.705 Sum_probs=8.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 445443102665605888877664
Q gi|254780360|r 126 VIYTIWLKRFTPQNIVIGGIAGAI 149 (305)
Q Consensus 126 ~iYtp~lKR~t~~~~~~~~i~ga~ 149 (305)
++|.|++|- |.++|++.|++
T Consensus 88 yVf~PLL~~----Ni~~G~l~Gg~ 107 (397)
T TIGR00882 88 YVFAPLLQS----NILVGALVGGL 107 (397)
T ss_pred HHHHHHHHH----HHHHHHHHHHH
T ss_conf 986779998----99999998699
No 66
>TIGR00892 2A0113 monocarboxylate transporter; InterPro: IPR004743 Proton-linked monocarboxylate transporters catalyse the rapid transport across the plasma membrane of many monocarboxylates such as lactate, pyruvate, branched-chain oxo acids derived from leucine, valine and isoleucine, and the ketone bodies acetoacetate, beta-hydroxybutyrate and acetate.; GO: 0015355 secondary active monocarboxylate transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane.
Probab=54.93 E-value=15 Score=16.53 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=24.0
Q ss_pred HHHHCCCCC---CHHHHHHHHH----HHHHHEEECCCCCCCCCCCCHHHHHH
Q ss_conf 431026656---0588887766----42211013236885663211147888
Q gi|254780360|r 130 IWLKRFTPQ---NIVIGGIAGA----IPPMIGWASVTGDVSIASLVMFLIIF 174 (305)
Q Consensus 130 p~lKR~t~~---~~~~~~i~ga----~~~l~g~~a~~~~~~~~~~~l~~~~~ 174 (305)
|+.|-.+.= .-+.++|-|= .-|.+|-.|-+..+-+..-+||....
T Consensus 284 pYAkd~gv~~~~AAfLLSi~gF~DifaRP~~Gl~Ag~~~~rP~~~YlFS~A~ 335 (475)
T TIGR00892 284 PYAKDKGVDEYEAAFLLSIIGFVDIFARPSVGLIAGLKLIRPRVQYLFSLAL 335 (475)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 5212568976778999999999888886666876175220114678999999
No 67
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=42.98 E-value=23 Score=15.40 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=16.7
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 101335124338877899743456898998764210
Q gi|254780360|r 195 ASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTML 230 (305)
Q Consensus 195 ~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~ 230 (305)
+=+||+.+...+..-+.......+.+..++++..+.
T Consensus 257 AllHs~~v~~kr~~l~~w~i~L~i~tF~lsllGTFL 292 (628)
T TIGR03145 257 ALLHSLIVTEKRGIFSYWTLLLSLFAFSLSLLGTFI 292 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998559999987478878999999999999986561
No 68
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=39.91 E-value=26 Score=15.12 Aligned_cols=70 Identities=21% Similarity=0.419 Sum_probs=37.3
Q ss_pred HHHHCCCCCCHHHHHHHHH-------HHHHHEEECCC--CC--CCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHC
Q ss_conf 4310266560588887766-------42211013236--88--566321114788889999--99999865356666410
Q gi|254780360|r 130 IWLKRFTPQNIVIGGIAGA-------IPPMIGWASVT--GD--VSIASLVMFLIIFLWTPP--HFWSLALLCKDDYQKAS 196 (305)
Q Consensus 130 p~lKR~t~~~~~~~~i~ga-------~~~l~g~~a~~--~~--~~~~~~~l~~~~~~W~~~--~~~~~a~~d~~dd~k~G 196 (305)
|.|||.++=+..-+++-.+ +||++|-+|-- .. +....+ +...|.++ |+.+...+-..+-+|.|
T Consensus 257 PlMkR~Gy~~~~AgAvEaaAS~GGQimPPiMGAAAFiMae~~gipY~~i----i~aA~iPAllyy~~v~~~V~~eA~k~~ 332 (642)
T COG4666 257 PLMKRAGYPPEFAGAVEAAASTGGQLMPPVMGAAAFIMAEYLGIPYTEI----ILAAFIPALLYYFGVILMVHLEAKKDG 332 (642)
T ss_pred HHHHHCCCCHHCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9788649980014530024313885110567899999999939878999----999998999999999999999999747
Q ss_pred CCCCCHH
Q ss_conf 1335124
Q gi|254780360|r 197 IPMLPNV 203 (305)
Q Consensus 197 ikslpv~ 203 (305)
.|-+|..
T Consensus 333 ~~gl~~~ 339 (642)
T COG4666 333 LPGLPRE 339 (642)
T ss_pred CCCCCHH
T ss_conf 9998834
No 69
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=39.61 E-value=26 Score=15.09 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHC
Q ss_conf 99999999886330661201371210705665304
Q gi|254780360|r 51 AMGAGASGALNMYYDADIDKMMARTASRPIPLGQI 85 (305)
Q Consensus 51 ~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~i 85 (305)
.+.++--.++|++++.+ +.||.....+
T Consensus 114 ~~l~tie~afN~Iw~v~--------~~R~~~~r~l 140 (411)
T PRK04214 114 MLLHTIEQTFNSIWRVA--------SARPWVTQFL 140 (411)
T ss_pred HHHHHHHHHHHHHHCCC--------CCCCHHHHHH
T ss_conf 99999999999986677--------6671799999
No 70
>PRK00625 shikimate kinase; Provisional
Probab=37.98 E-value=6.7 Score=18.59 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=11.6
Q ss_pred HHCCCHHCCCHHHHCHHHHH
Q ss_conf 30661201371210705665
Q gi|254780360|r 63 YYDADIDKMMARTASRPIPL 82 (305)
Q Consensus 63 ~~D~~iD~~~~RT~~RPl~~ 82 (305)
+.|.+.|...+|.++||++.
T Consensus 101 ~L~~~~e~i~~Rl~~rpl~~ 120 (173)
T PRK00625 101 LLSLPIATIYQRLQKRGLPE 120 (173)
T ss_pred EEECCHHHHHHHHHCCCCCC
T ss_conf 98399999999982699877
No 71
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein; InterPro: IPR011853 In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This entry describes such transporters, found in the archaea and in bacteria..
Probab=36.02 E-value=30 Score=14.75 Aligned_cols=88 Identities=19% Similarity=0.207 Sum_probs=49.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999-999998863306612013712107056653047---89899988887766899988634458999999
Q gi|254780360|r 43 SVISIFAIAMG-AGASGALNMYYDADIDKMMARTASRPIPLGQIS---PWEAWVLGVSLAVSSIVIMGLAINWVSATLLF 118 (305)
Q Consensus 43 ~~~~~~~~~l~-~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is---~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~ 118 (305)
+.+.++|+++. +|.|.-+||.- +-+. |+.. .|-|.+=+..++..+. + ---|.++. +.
T Consensus 183 f~F~LFGafL~~~G~G~fF~D~a-------------~a~~-G~~~GGPAKvAV~sSal~G~~sG--S-svANvVtt--G~ 243 (681)
T TIGR02123 183 FLFILFGAFLEKSGVGKFFIDLA-------------FALA-GKRRGGPAKVAVVSSALMGMISG--S-SVANVVTT--GS 243 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHH-CCCCCCCCHHHHHHHHHHHHHHH--H-HHHHHHHH--HC
T ss_conf 99999999999850789999999-------------9983-76789950457876678877899--9-99888852--00
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHH-----HH--HHHHHEEEC
Q ss_conf 9888654445443102665605888877-----66--422110132
Q gi|254780360|r 119 MSIFCYVVIYTIWLKRFTPQNIVIGGIA-----GA--IPPMIGWAS 157 (305)
Q Consensus 119 ~~~~~y~~iYtp~lKR~t~~~~~~~~i~-----ga--~~~l~g~~a 157 (305)
++| |.|||.++-+++-|++= |+ +||.+|-+|
T Consensus 244 fTI--------PlMKr~Gy~~~fAgAvEAaAS~GGQImPPiMGAAA 281 (681)
T TIGR02123 244 FTI--------PLMKRAGYKPEFAGAVEAAASTGGQIMPPIMGAAA 281 (681)
T ss_pred CHH--------HHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 003--------56763777977416668878606701235899999
No 72
>TIGR00813 sss transporter, solute:sodium symporter (SSS) family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities , . One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin . The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N-terminus located on the periplasmic side of the membrane and the C-terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=34.54 E-value=31 Score=14.61 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHCCCHHCCCH
Q ss_conf 99999886330661201371
Q gi|254780360|r 54 AGASGALNMYYDADIDKMMA 73 (305)
Q Consensus 54 ~~a~~~~Nd~~D~~iD~~~~ 73 (305)
+....+.+|+.+..+++..+
T Consensus 70 ~~g~~T~~eyl~~RF~~~~r 89 (448)
T TIGR00813 70 KNGALTMPEYLEKRFGKGHR 89 (448)
T ss_pred HCCCCCHHHHHHCCCCCCCH
T ss_conf 64864567887300388850
No 73
>pfam02554 CstA Carbon starvation protein CstA. This family consists of Carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilisation.
Probab=29.36 E-value=38 Score=14.08 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=7.5
Q ss_pred HHHHHHCCHHHHHHHH
Q ss_conf 5665304789899988
Q gi|254780360|r 79 PIPLGQISPWEAWVLG 94 (305)
Q Consensus 79 Pl~~g~is~~~a~~~~ 94 (305)
.++...++++...++.
T Consensus 118 ~i~~~~lG~~~~~lf~ 133 (382)
T pfam02554 118 EIAREELGPVAGVLFL 133 (382)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999986488999999
No 74
>KOG3976 consensus
Probab=27.59 E-value=41 Score=13.90 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.0
Q ss_pred HCCCHHCCCHHHHCHHHHHHHCC
Q ss_conf 06612013712107056653047
Q gi|254780360|r 64 YDADIDKMMARTASRPIPLGQIS 86 (305)
Q Consensus 64 ~D~~iD~~~~RT~~RPl~~g~is 86 (305)
.|.|-|..|-.|+.||..-|++-
T Consensus 32 k~~~~~~~~~~~P~~p~~pgKvr 54 (247)
T KOG3976 32 KDPDRDLTNYPTPPRPEYPGKVR 54 (247)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67777754477898899975323
No 75
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=26.78 E-value=43 Score=13.81 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=17.3
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 566530478989998888776689998
Q gi|254780360|r 79 PIPLGQISPWEAWVLGVSLAVSSIVIM 105 (305)
Q Consensus 79 Pl~~g~is~~~a~~~~~~l~~~~~~~l 105 (305)
+.-.+|++-|.+.+++..+..+|..+.
T Consensus 69 ~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 69 GLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988424889999999999999998
No 76
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=26.26 E-value=44 Score=13.75 Aligned_cols=14 Identities=7% Similarity=0.254 Sum_probs=8.6
Q ss_pred HHHHHHHHCCCHHC
Q ss_conf 99886330661201
Q gi|254780360|r 57 SGALNMYYDADIDK 70 (305)
Q Consensus 57 ~~~~Nd~~D~~iD~ 70 (305)
..++=|++|+.+++
T Consensus 104 ~~T~~d~l~~Rf~s 117 (493)
T COG0591 104 ATTIPDFLEARFGS 117 (493)
T ss_pred CCCHHHHHHHHHCC
T ss_conf 70289999998199
No 77
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=25.09 E-value=46 Score=13.62 Aligned_cols=13 Identities=31% Similarity=0.449 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9996268999999
Q gi|254780360|r 12 IVLLKPRVMSLAI 24 (305)
Q Consensus 12 ~~L~kp~~~~~~~ 24 (305)
++..|.|..|+.+
T Consensus 277 ~~~~k~R~~WLlv 289 (451)
T COG2239 277 LKLVKKRIPWLLV 289 (451)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9987510799999
No 78
>COG4854 Predicted membrane protein [Function unknown]
Probab=23.02 E-value=50 Score=13.38 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 2689999999999999970898998
Q gi|254780360|r 16 KPRVMSLAIYTAFVGIVLAPGHISV 40 (305)
Q Consensus 16 kp~~~~~~~~~~~~g~~la~~~~~~ 40 (305)
||....-....+..|+.+.+|+...
T Consensus 9 ~~l~~ivm~~GA~~g~a~~sGn~~i 33 (126)
T COG4854 9 KILFAIVMAVGAAVGYAVESGNWFI 33 (126)
T ss_pred HHHHHHHHHHHHHHHEEECCCCEEH
T ss_conf 8999999999878821103798515
No 79
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=22.67 E-value=40 Score=13.96 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCHHCCCHHHHCHH-HHHHHCCHHHHHHH
Q ss_conf 999886330661201371210705-66530478989998
Q gi|254780360|r 56 ASGALNMYYDADIDKMMARTASRP-IPLGQISPWEAWVL 93 (305)
Q Consensus 56 a~~~~Nd~~D~~iD~~~~RT~~RP-l~~g~is~~~a~~~ 93 (305)
|-++==+|..|++|--|| +|| .+|..++|.+|..=
T Consensus 33 ACNiQCNYCNRKyDC~NE---SRPGV~S~~LtP~qA~~k 68 (461)
T TIGR01290 33 ACNIQCNYCNRKYDCANE---SRPGVVSELLTPEQALAK 68 (461)
T ss_pred CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHH
T ss_conf 334554556864166788---887620134684899999
Done!