Query gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 305
No_of_seqs 135 out of 2742
Neff 7.3
Searched_HMMs 33803
Date Wed Jun 1 12:20:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780360.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3dh4_A Sodium/glucose cotrans 70.7 6.5 0.00019 18.3 9.8 12 60-71 85-96 (530)
2 >1v4e_A Octoprenyl-diphosphate 59.1 11 0.00032 17.0 7.4 74 8-86 32-105 (175)
3 >1t95_A Hypothetical protein A 21.1 20 0.0006 15.3 -0.3 16 71-87 24-39 (69)
4 >2kdo_A Ribosome maturation pr 20.4 25 0.00073 14.8 -0.0 16 71-87 18-33 (65)
5 >1wmw_A Geranylgeranyl diphosp 18.9 53 0.0016 12.9 3.2 18 191-208 37-54 (115)
6 >2wbm_A MTHSBDS, ribosome matu 18.8 25 0.00073 14.8 -0.3 15 71-86 24-38 (74)
7 >3lmd_A Geranylgeranyl pyropho 18.1 56 0.0016 12.8 11.7 167 36-207 90-274 (360)
8 >2ftz_A Geranyltranstransferas 15.6 64 0.0019 12.4 6.7 15 195-209 103-117 (136)
9 >3ixz_A Potassium-transporting 13.4 73 0.0022 12.0 10.8 70 9-82 2-77 (124)
10 >1uby_A FPS, farnesyl diphosph 12.8 77 0.0023 11.9 2.2 16 191-206 41-56 (134)
No 1
>>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION transport, membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} (A:)
Probab=70.70 E-value=6.5 Score=18.29 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=4.6
Q ss_pred HHHHHCCCHHCC
Q ss_conf 863306612013
Q gi|254780360|r 60 LNMYYDADIDKM 71 (305)
Q Consensus 60 ~Nd~~D~~iD~~ 71 (305)
.-|++++..|++
T Consensus 85 ~~e~~~~Ry~~~ 96 (530)
T 3dh4_A 85 IPEFVEKRFNKK 96 (530)
T ss_dssp HHHHHHHHTCHH
T ss_pred CHHHHHHHHHHH
T ss_conf 278999998678
No 2
>>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} (A:125-299)
Probab=59.12 E-value=11 Score=16.95 Aligned_cols=74 Identities=8% Similarity=-0.054 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCC
Q ss_conf 7999999626899999999999999708989989999999999999999998863306612013712107056653047
Q gi|254780360|r 8 LNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQIS 86 (305)
Q Consensus 8 ~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is 86 (305)
...|.+..+-+...+.-.++..|..++........-+-..+| .++++.||+.|..-|..+......=+-.|+.|
T Consensus 32 ~~~y~~i~~~KTg~lf~~a~~~ga~lag~~~e~~~~~~~~~G-----~~fQi~dD~~D~~~~~~~~~k~~~Dl~~gk~T 105 (175)
T 1v4e_A 32 KEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIG-----TIYQMFDDIMDFAGMEKIGKDGFLDLKNGVAS 105 (175)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-----HHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCC
T ss_pred HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH-----HHHHHHHHHCCCCCCHHCCCCCHHHHHCCCHH
T ss_conf 999999987422023203333453112340999999999999-----99999776225678442089414334179647
No 3
>>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} (A:95-163)
Probab=21.15 E-value=20 Score=15.33 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=11.3
Q ss_pred CCHHHHCHHHHHHHCCH
Q ss_conf 37121070566530478
Q gi|254780360|r 71 MMARTASRPIPLGQISP 87 (305)
Q Consensus 71 ~~~RT~~RPl~~g~is~ 87 (305)
.||+| +||.|.++|..
T Consensus 24 VnP~T-~~P~p~~~IE~ 39 (69)
T 1t95_A 24 IDPRT-NAPHPPSRIER 39 (69)
T ss_dssp EBTTT-TBCCCHHHHHH
T ss_pred CCCCC-CCCCCHHHHHH
T ss_conf 09888-99898899999
No 4
>>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein, acetylation, cytoplasm, disease mutation; NMR {Homo sapiens} (A:105-169)
Probab=20.37 E-value=25 Score=14.85 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=11.3
Q ss_pred CCHHHHCHHHHHHHCCH
Q ss_conf 37121070566530478
Q gi|254780360|r 71 MMARTASRPIPLGQISP 87 (305)
Q Consensus 71 ~~~RT~~RPl~~g~is~ 87 (305)
.|||| +||.|.++|..
T Consensus 18 VnP~T-~~P~p~~~IE~ 33 (65)
T 2kdo_A 18 VNPET-KRPYTVILIER 33 (65)
T ss_dssp ECCTT-SCTTCHHHHHH
T ss_pred CCCCC-CCCCCHHHHHH
T ss_conf 59877-99899899999
No 5
>>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8} (A:193-307)
Probab=18.95 E-value=53 Score=12.87 Aligned_cols=18 Identities=6% Similarity=-0.317 Sum_probs=13.8
Q ss_pred HHHHHCCCCCCHHHHHHH
Q ss_conf 666410133512433887
Q gi|254780360|r 191 DYQKASIPMLPNVVTDRT 208 (305)
Q Consensus 191 dd~k~Gikslpv~~G~k~ 208 (305)
+|.+.|-+|+|+.+....
T Consensus 37 ~Dl~~gK~T~pii~al~~ 54 (115)
T 1wmw_A 37 GDLYEGKRTLILLRFLEE 54 (115)
T ss_dssp HHHHHTCCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 021367761999999998
No 6
>>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein, ribosome binding; 1.75A {Methanothermobacterthermautotrophicus} (A:110-183)
Probab=18.81 E-value=25 Score=14.83 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=10.9
Q ss_pred CCHHHHCHHHHHHHCC
Q ss_conf 3712107056653047
Q gi|254780360|r 71 MMARTASRPIPLGQIS 86 (305)
Q Consensus 71 ~~~RT~~RPl~~g~is 86 (305)
.||+| +||.|.++|.
T Consensus 24 VnP~T-~~P~p~~~IE 38 (74)
T 2wbm_A 24 INPQN-GLPHPPKRIE 38 (74)
T ss_dssp ECTTT-CCCCCHHHHH
T ss_pred CCCCC-CCCCCHHHHH
T ss_conf 48898-9979899999
No 7
>>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} (A:)
Probab=18.08 E-value=56 Score=12.75 Aligned_cols=167 Identities=11% Similarity=-0.094 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98998999999999999999999886330661201371210705665304789899988887766899988634458999
Q gi|254780360|r 36 GHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSAT 115 (305)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~ 115 (305)
+..+.........+.=+..+++.+..|+.|.+-.+... |-+-.+.....|...+-.+...++-.+.-..+...-.
T Consensus 90 ~~~~~~~~~~~A~aiEliH~asLihDDI~D~s~~RRg~-----pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~ 164 (360)
T 3lmd_A 90 EKPLSENVIKAAVVVEITHLATLYHDDVMDEASMRRGV-----PSANARWDNSVAILAGDILLAHASGLMSQLGTDTVAH 164 (360)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99952889999999999999999866867799987898-----5544016826999999999999999998669499999
Q ss_pred HHHHHHHHHHHHHHHH---HHCCC--CCCHHHHHHHH---HHHHHHEEECCCCCCCCC-CCCHH--HHHHHHHHHHHHHH
Q ss_conf 9999888654445443---10266--56058888776---642211013236885663-21114--78888999999999
Q gi|254780360|r 116 LLFMSIFCYVVIYTIW---LKRFT--PQNIVIGGIAG---AIPPMIGWASVTGDVSIA-SLVMF--LIIFLWTPPHFWSL 184 (305)
Q Consensus 116 l~~~~~~~y~~iYtp~---lKR~t--~~~~~~~~i~g---a~~~l~g~~a~~~~~~~~-~~~l~--~~~~~W~~~~~~~~ 184 (305)
+.-..--....-.--. -+..+ .+...+-.=++ +.++.+|..+.+.+-... .+--+ .+-...|+.-|..=
T Consensus 165 ~~~~~~~~~~Gq~~dl~~~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld 244 (360)
T 3lmd_A 165 FAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIID 244 (360)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999984667887499999999999999999999999998498999999999999999999988888875
Q ss_pred HHH-------HHHHHHHHCCCCCCHHHHHH
Q ss_conf 865-------35666641013351243388
Q gi|254780360|r 185 ALL-------CKDDYQKASIPMLPNVVTDR 207 (305)
Q Consensus 185 a~~-------d~~dd~k~Gikslpv~~G~k 207 (305)
-.. ....|.+.|-+|+|+...-+
T Consensus 245 ~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~ 274 (360)
T 3lmd_A 245 IFSETHESGKTPGTDLREGVFTLPVLYALR 274 (360)
T ss_dssp HHC--------CCHHHHHTCCCHHHHHHHH
T ss_pred CCCCHHHHCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 028877749972047767984099999998
No 8
>>2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8} (A:131-266)
Probab=15.65 E-value=64 Score=12.39 Aligned_cols=15 Identities=13% Similarity=0.028 Sum_probs=7.5
Q ss_pred HCCCCCCHHHHHHHH
Q ss_conf 101335124338877
Q gi|254780360|r 195 ASIPMLPNVVTDRTT 209 (305)
Q Consensus 195 ~Gikslpv~~G~k~t 209 (305)
.|-+|+|+..+.+.+
T Consensus 103 egk~T~p~~~al~~a 117 (136)
T 2ftz_A 103 TEXVTLVXXVGIQXA 117 (136)
T ss_dssp ----CHHHHHCHHHH
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 997556899999999
No 9
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:99-168,A:290-343)
Probab=13.44 E-value=73 Score=12.03 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHH
Q ss_conf 99999962689999999999999970-----8989-98999999999999999999886330661201371210705665
Q gi|254780360|r 9 NFFIVLLKPRVMSLAIYTAFVGIVLA-----PGHI-SVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPL 82 (305)
Q Consensus 9 ~~y~~L~kp~~~~~~~~~~~~g~~la-----~~~~-~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~ 82 (305)
+.+++-.|-.....+...+..++.+. .+.. ...+.. -......+---..++.=++|++-+|.+++| |+-.
T Consensus 2 ~~fl~qf~~~~~iiL~vaaiis~~~~~i~~~~~~~~~~~~~~-~~ivI~~iv~in~~igf~QE~kAeka~~~T---PLq~ 77 (124)
T 3ixz_A 2 VKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLY-LALALIAVVVVTGCFGYYQEFKSTNIIEKT---PIAI 77 (124)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHH
T ss_conf 999999866499999999999999999872357666512599-999999999999999999999999999578---7899
No 10
>>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} (A:234-367)
Probab=12.83 E-value=77 Score=11.92 Aligned_cols=16 Identities=6% Similarity=-0.350 Sum_probs=13.2
Q ss_pred HHHHHCCCCCCHHHHH
Q ss_conf 6664101335124338
Q gi|254780360|r 191 DYQKASIPMLPNVVTD 206 (305)
Q Consensus 191 dd~k~Gikslpv~~G~ 206 (305)
.|.+.|-+|+|+.+.-
T Consensus 41 ~Dl~~gk~Tlpii~al 56 (134)
T 1uby_A 41 TDIQDNKCSWLVVQCL 56 (134)
T ss_dssp CCSSSCCCCHHHHHHH
T ss_pred HHHCCCCCCHHHHHHH
T ss_conf 4440587759999999
Done!